(used for mutation description)
(last modified July 9, 2012)
This file was created to facilitate the description of sequence variants on transcript NM_000584.3 in the IL8 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_029889.1, covering IL8 transcript NM_000584.3.(upstream sequence) . . . g.5033 gagggtgcataagttctctagtagggtgatgat c.-121 . . . . . . g.5093 ataaaaagccaccggagcactccataaggcacaaactttcagagacagcagagcacacaa c.-61 . . . . . . g.5153 gcttctaggacaagagccaggaagaaaccaccggaaggaaccatctcactgtgtgtaaac c.-1 . . . . . . g.5213 ATGACTTCCAAGCTGGCCGTGGCTCTCTTGGCAGCCTTCCTGATTTCTGCAGCTCTGTGT c.60 M T S K L A V A L L A A F L I S A A L C p.20 | 02 . . . . . . g.6092 GAAG | GTGCAGTTTTGCCAAGGAGTGCTAAAGAACTTAGATGTCAGTGCATAAAGACATAC c.120 E G | A V L P R S A K E L R C Q C I K T Y p.40 . . . . . . g.6152 TCCAAACCTTTCCACCCCAAATTTATCAAAGAACTGAGAGTGATTGAGAGTGGACCACAC c.180 S K P F H P K F I K E L R V I E S G P H p.60 . . | 03 . . . . g.6483 TGCGCCAACACAGAAATTAT | TGTAAAGCTTTCTGATGGAAGAGAGCTCTGTCTGGACCCC c.240 C A N T E I I | V K L S D G R E L C L D P p.80 . . . . | 04 . . g.6959 AAGGAAAACTGGGTGCAGAGGGTTGTGGAGAAGTTTTTGAAGAG | GGCTGAGAATTCATAA c.300 K E N W V Q R V V E K F L K R | A E N S X p.99 . . . . . . g.7019 aaaaattcattctctgtggtatccaagaatcagtgaagatgccagtgaaacttcaagcaa c.*60 . . . . . . g.7079 atctacttcaacacttcatgtattgtgtgggtctgttgtagggttgccagatgcaataca c.*120 . . . . . . g.7139 agattcctggttaaatttgaatttcagtaaacaatgaatagtttttcattgtaccatgaa c.*180 . . . . . . g.7199 atatccagaacatacttatatgtaaagtattatttatttgaatctacaaaaaacaacaaa c.*240 . . . . . . g.7259 taatttttaaatataaggattttcctagatattgcacgggagaatatacaaatagcaaaa c.*300 . . . . . . g.7319 ttgaggccaagggccaagagaatatccgaactttaatttcaggaattgaatgggtttgct c.*360 . . . . . . g.7379 agaatgtgatatttgaagcatcacataaaaatgatgggacaataaattttgccataaagt c.*420 . . . . . . g.7439 caaatttagctggaaatcctggatttttttctgttaaatctggcaaccctagtctgctag c.*480 . . . . . . g.7499 ccaggatccacaagtccttgttccactgtgccttggtttctcctttatttctaagtggaa c.*540 . . . . . . g.7559 aaagtattagccaccatcttacctcacagtgatgttgtgaggacatgtggaagcacttta c.*600 . . . . . . g.7619 agttttttcatcataacataaattattttcaagtgtaacttattaacctatttattattt c.*660 . . . . . . g.7679 atgtatttatttaagcatcaaatatttgtgcaagaatttggaaaaatagaagatgaatca c.*720 . . . . . . g.7739 ttgattgaatagttataaagatgttatagtaaatttattttattttagatattaaatgat c.*780 . . . . . . g.7799 gttttattagataaatttcaatcagggtttttagattaaacaaacaaacaattgggtacc c.*840 . . . . . . g.7859 cagttaaattttcatttcagataaacaacaaataattttttagtataagtacattattgt c.*900 . . . . . . g.7919 ttatctgaaattttaattgaactaacaatcctagtttgatactcccagtcttgtcattgc c.*960 . . . . . . g.7979 cagctgtgttggtagtgctgtgttgaattacggaataatgagttagaactattaaaacag c.*1020 . . . . . . g.8039 ccaaaactccacagtcaatattagtaatttcttgctggttgaaacttgtttattatgtac c.*1080 . . . . . . g.8099 aaatagattcttataatattatttaaatgactgcatttttaaatacaaggctttatattt c.*1140 . . . . . . g.8159 ttaactttaagatgtttttatgtgctctccaaattttttttactgtttctgattgtatgg c.*1200 . . . . . g.8211 aaatataaaagtaaatatgaaacatttaaaatataatttgttgtcaaagtaa c.*1252 (downstream sequence)Legend:
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