(used for variant description)
(last modified March 5, 2014)
This file was created to facilitate the description of sequence variants on transcript NM_000455.4 in the STK11 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000019.9, covering STK11 transcript NM_000455.4.
(upstream sequence)
. . . g.5035
gcgtgtcgggcgcggaagggggaggcggcccgggg c.-1081
. . . . . . g.5095
cgcccgcgagtgaggcgcggggcggcgaagggagcgcgggtggcggcacttgctgccgcg c.-1021
. . . . . . g.5155
gccttggatgggctgggcccccctcgccgctccgcctcctccacacgcgcggcggccgcg c.-961
. . . . . . g.5215
gcgagggggacgcgccgcccggggcccggcaccttcgggaaccccccggcccggagcctg c.-901
. . . . . . g.5275
cggcctgcgccgcctcggccgccgggagccccgtggagcccccgccgccgcgccgccccg c.-841
. . . . . . g.5335
cggaccggacgctgagggcactcggggcggggcgcgcgctcgggcagacgtttgcgggga c.-781
. . . . . . g.5395
ggggggcgcctgccgggccccggcgaccaccttgggggtcgcgggccggctcggggggcg c.-721
. . . . . . g.5455
cccagtgcgggccctcgcgggcgccgggcagcgaccagccctgagcggagctgttggccg c.-661
. . . . . . g.5515
cggcgggaggcctcccggacgcccccagccccccgaacgctcgcccgggccggcgggagt c.-601
. . . . . . g.5575
cggcgccccccgggaggtccgctcggtcgtccgcggcggagcgtttgctcctgggacagg c.-541
. . . . . . g.5635
cggtgggaccggggcgtcgccggagacgcccccagcgaagttgggctctccaggtgtggg c.-481
. . . . . . g.5695
ggtcccggggggtagcgacgtcgcggacccggcctgtgggatgggcggcccggagaagac c.-421
. . . . . . g.5755
tgcgctcggccgtgttcatacttgtccgtgggcctgaggtccccggaggatgacctagca c.-361
. . . . . . g.5815
ctgaaaagccccggccggcctccccagggtccccgaggacgaagttgaccctgaccgggc c.-301
. . . . . . g.5875
cgtctcccagttctgaggcccgggtcccactggaactcgcgtctgagccgccgtcccgga c.-241
. . . . . . g.5935
cccccggtgcccgccggtccgcagaccctgcaccgggcttggactcgcagccgggactga c.-181
. . . . . . g.5995
cgtgtagaacaatcgtttctgttggaagaagggtttttcccttccttttggggtttttgt c.-121
. . . . . . g.6055
tgccttttttttttcttttttctttgtaaaattttggagaagggaagtcggaacacaagg c.-61
. . . . . . g.6115
aaggaccgctcacccgcggactcagggctggcggcgggactccaggaccctgggtccagc c.-1
. . . . . . g.6175
ATGGAGGTGGTGGACCCGCAGCAGCTGGGCATGTTCACGGAGGGCGAGCTGATGTCGGTG c.60
M E V V D P Q Q L G M F T E G E L M S V p.20
. . . . . . g.6235
GGTATGGACACGTTCATCCACCGCATCGACTCCACCGAGGTCATCTACCAGCCGCGCCGC c.120
G M D T F I H R I D S T E V I Y Q P R R p.40
. . . . . . g.6295
AAGCGGGCCAAGCTCATCGGCAAGTACCTGATGGGGGACCTGCTGGGGGAAGGCTCTTAC c.180
K R A K L I G K Y L M G D L L G E G S Y p.60
. . . . . . g.6355
GGCAAGGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGGAGGGCCGTCAAGATCCTC c.240
G K V K E V L D S E T L C R R A V K I L p.80
. . . . . | 02 . g.17628
AAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAA | GGAAATTCAA c.300
K K K K L R R I P N G E A N V K K | E I Q p.100
. . . . . . g.17688
CTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAA c.360
L L R R L R H K N V I Q L V D V L Y N E p.120
. | 03 . . . . . g.18571
GAGAAGCAGAAAAT | GTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTG c.420
E K Q K M | Y M V M E Y C V C G M Q E M L p.140
. . . . | 04 . . g.19590
GACAGCGTGCCGGAGAAGCGTTTCCCAGTGTGCCAGGCCCACGG | GTACTTCTGTCAGCTG c.480
D S V P E K R F P V C Q A H G | Y F C Q L p.160
. . . . . . g.19650
ATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGG c.540
I D G L E Y L H S Q G I V H K D I K P G p.180
. . . . . | 05. g.19785
AACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAG | GCA c.600
N L L L T T G G T L K I S D L G V A E | A p.200
. . . . . . g.19845
CTGCACCCGTTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAG c.660
L H P F A A D D T C R T S Q G S P A F Q p.220
. . . . . . g.19905
CCGCCCGAGATTGCCAACGGCCTGGACACCTTCTCCGGCTTCAAGGTGGACATCTGGTCG c.720
P P E I A N G L D T F S G F K V D I W S p.240
. | 06 . . . . . g.20460
GCTGGGGTCACCCT | CTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATC c.780
A G V T L | Y N I T T G L Y P F E G D N I p.260
. . . . . . g.20520
TACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCC c.840
Y K L F E N I G K G S Y A I P G D C G P p.280
. . | 07 . . . . g.21188
CCGCTCTCTGACCTGCTGAAAG | GGATGCTTGAGTACGAACCGGCCAAGAGGTTCTCCATC c.900
P L S D L L K G | M L E Y E P A K R F S I p.300
. . | 08 . . . . g.22226
CGGCAGATCCGGCAGCACAG | CTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTG c.960
R Q I R Q H S | W F R K K H P P A E A P V p.320
. . . . . . g.22286
CCCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTAC c.1020
P I P P S P D T K D R W R S M T V V P Y p.340
. . . . . . g.22346
TTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATC c.1080
L E D L H G A D E D E D L F D I E D D I p.360
. . | 09 . . . g.25687
ATCTACACTCAGGACTTCACGGTGCCCG | GACAGGTCCCAGAAGAGGAGGCCAGTCACAAT c.1140
I Y T Q D F T V P G | Q V P E E E A S H N p.380
. . . . . . g.25747
GGACAGCGCCGGGGCCTCCCCAAGGCCGTGTGTATGAACGGCACAGAGGCGGCGCAGCTG c.1200
G Q R R G L P K A V C M N G T E A A Q L p.400
. . . . . . g.25807
AGCACCAAATCCAGGGCGGAGGGCCGGGCCCCCAACCCTGCCCGCAAGGCCTGCTCCGCC c.1260
S T K S R A E G R A P N P A R K A C S A p.420
. . . . g.25849
AGCAGCAAGATCCGCCGGCTGTCGGCCTGCAAGCAGCAGTGA | c.1303
S S K I R R L S A C K Q Q X p.433
. | 10 . . . . . g.26838
ggctggccgcctgcag | cccgtgtccaggagccccgccaggtgcccgcgccaggccctcag c.*60
. . . . . . g.26898
tcttcctgccggttccgcccgccctcccggagaggtggccgccatgcttctgtgccgacc c.*120
. . . . . . g.26958
acgccccaggacctccggagcgccctgcagggccgggcagggggacagcagggaccgggc c.*180
. . . . . . g.27018
gcagccctcccccctcggccgcccggcagtgcacgcggcttgttgacttcgcagccccgg c.*240
. . . . . . g.27078
gcggagccttcccgggcgggcgtgggaggagggaggcggcctccatgcactttatgtgga c.*300
. . . . . . g.27138
gactactggccccgcccgtggcctcgtgctccgcagggcgcccagcgccgtccggcggcc c.*360
. . . . . . g.27198
ccgccgcagaccagctggcgggtgtggagaccaggctcctgaccccgccatgcatgcagc c.*420
. . . . . . g.27258
gccacctggaagccgcgcggccgctttggttttttgtttggttggttccattttcttttt c.*480
. . . . . . g.27318
ttctttttttttttaagaaaaaataaaaggtggatttgagctgtggctgtgaggggtgtt c.*540
. . . . . . g.27378
tgggagctgctgggtggcaggggggctgtggggtcgggctcacgtcgcggccgcctttgc c.*600
. . . . . . g.27438
gctctcgggtcaccctgctttggcggcccggccggagggcaggaccctcacctctccccc c.*660
. . . . . . g.27498
aaggccactgcgctcttgggaccccagagaaaacccggagcaagcaggagtgtgcggtca c.*720
. . . . . . g.27558
atatttatatcatccagaaaagaaaaacacgagaaacgccatcgcgggatggtgcagacg c.*780
. . . . . . g.27618
cggcggggactcggagggtgccgtgcgggcgaggccgcccaaatttggcaataaataaag c.*840
. g.27637
cttgggaagcttggacctg c.*859
(downstream sequence)
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