### LOVD-version 3000-30b ### Full data download ### To import, do not remove or alter this header ### ## Filter: (gene_public = H19) # charset = UTF-8 ## Genes ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{name}}" "{{chromosome}}" "{{chrom_band}}" "{{imprinting}}" "{{refseq_genomic}}" "{{refseq_UD}}" "{{reference}}" "{{url_homepage}}" "{{url_external}}" "{{allow_download}}" "{{id_hgnc}}" "{{id_entrez}}" "{{id_omim}}" "{{show_hgmd}}" "{{show_genecards}}" "{{show_genetests}}" "{{show_orphanet}}" "{{note_index}}" "{{note_listing}}" "{{refseq}}" "{{refseq_url}}" "{{disclaimer}}" "{{disclaimer_text}}" "{{header}}" "{{header_align}}" "{{footer}}" "{{footer_align}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{updated_by}}" "{{updated_date}}" "H19" "H19, imprinted maternally expressed transcript (non-protein coding)" "11" "p15.5" "paternal" "NG_016165.1" "UD_134061689260" "" "http://www.LOVD.nl/H19" "" "1" "4713" "283120" "103280" "1" "1" "1" "1" "" "" "g" "http://www.ncbi.nlm.nih.gov/nuccore/NG_016165.1" "1" "" "" "-1" "" "-1" "00008" "2012-06-25 00:00:00" "00006" "2014-12-29 12:47:22" "00006" "2018-11-03 09:47:35" ## Transcripts ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{geneid}}" "{{name}}" "{{id_mutalyzer}}" "{{id_ncbi}}" "{{id_ensembl}}" "{{id_protein_ncbi}}" "{{id_protein_ensembl}}" "{{id_protein_uniprot}}" "{{remarks}}" "{{position_c_mrna_start}}" "{{position_c_mrna_end}}" "{{position_c_cds_end}}" "{{position_g_mrna_start}}" "{{position_g_mrna_end}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00000237" "H19" "H19, imprinted maternally expressed transcript (non-protein coding)" "001" "NR_002196.1" "" "" "" "" "" "1" "2308" "2308" "2019065" "2016406" "00008" "2012-06-25 11:35:21" "" "" ## Diseases ## Do not remove or alter this header ## ## Count = 4 "{{id}}" "{{symbol}}" "{{name}}" "{{inheritance}}" "{{id_omim}}" "{{tissues}}" "{{features}}" "{{remarks}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00231" "BWS" "Beckwith-Wiedemann syndrome (BWS)" "AD" "130650" "" "" "" "00006" "2013-10-09 19:27:53" "00006" "2021-12-10 21:51:32" "00232" "SRS;RSS" "Silver-Russell syndrome (SRS, Russell-Silver syndrome (RSS))" "AD" "180860" "" "" "" "00006" "2013-10-09 19:30:21" "00006" "2021-12-10 21:51:32" "00774" "WT1" "Wilms tumor, type 1, somatic (WT-1, nephroblastoma)" "AD;SMu" "194070" "" "" "" "00006" "2014-09-25 23:29:40" "00006" "2021-12-10 21:51:32" "00952" "WT2" "Wilms tumor, type 2 (WT-2)" "AD;SMu" "194071" "" "" "" "00006" "2014-09-25 23:29:40" "00006" "2021-12-10 21:51:32" ## Genes_To_Diseases ## Do not remove or alter this header ## ## Count = 3 "{{geneid}}" "{{diseaseid}}" "H19" "00231" "H19" "00774" "H19" "00952" ## Individuals ## Do not remove or alter this header ## ## Count = 3 "{{id}}" "{{fatherid}}" "{{motherid}}" "{{panelid}}" "{{panel_size}}" "{{license}}" "{{owned_by}}" "{{Individual/Reference}}" "{{Individual/Remarks}}" "{{Individual/Gender}}" "{{Individual/Consanguinity}}" "{{Individual/Origin/Geographic}}" "{{Individual/Age_of_death}}" "{{Individual/VIP}}" "{{Individual/Data_av}}" "{{Individual/Treatment}}" "{{Individual/Origin/Population}}" "{{Individual/Individual_ID}}" "00027197" "" "" "" "1" "" "00006" "{PMID:Kagami 2014:25351781}" "" "M" "no" "Japan" "" "0" "" "" "" "" "00027198" "" "" "" "1" "" "00006" "{PMID:Kagami 2014:25351781}" "in vitro fertilization-embryo transfer" "F" "no" "Japan" "" "0" "" "7y-gonadotropin-releasing hormone analog (precocious puberty, breast development)" "" "" "00080090" "" "" "" "1" "" "01594" "{PMID:Grønskov 2010:21278389}, for EUCID-SRS consortium" "" "M" "" "" "" "0" "" "" "" "21278389-Pat1" ## Individuals_To_Diseases ## Do not remove or alter this header ## ## Count = 3 "{{individualid}}" "{{diseaseid}}" "00027197" "00232" "00027198" "00232" "00080090" "00232" ## Phenotypes ## Do not remove or alter this header ## ## Note: Only showing Phenotype columns active for Diseases 00231, 00232, 00774, 00952 ## Count = 3 "{{id}}" "{{diseaseid}}" "{{individualid}}" "{{owned_by}}" "{{Phenotype/Inheritance}}" "{{Phenotype/Age}}" "{{Phenotype/Additional}}" "{{Phenotype/Age/Onset}}" "{{Phenotype/Head/Microcephaly}}" "{{Phenotype/Birth/Gestational_age_wk}}" "{{Phenotype/Feeding/Problems}}" "{{Phenotype/Age/Diagnosis}}" "{{Phenotype/Onset}}" "{{Phenotype/Protein}}" "{{Phenotype/Intrauterine_growth_retardation/HPO/0001511}}" "{{Phenotype/Enzyme/CPK}}" "{{Phenotype/Heart/Myocardium}}" "{{Phenotype/Lung}}" "{{Phenotype/Growth/Retardation/Postnatal/HPO_0008897}}" "{{Phenotype/Asymmetry/Body}}" "{{Phenotype/Diagnosis/Definite}}" "{{Phenotype/Diagnosis/Initial}}" "0000023270" "00232" "00027197" "00006" "Isolated (sporadic)" "09y06m" "karyotype 46XY, birth length 46.5cm (-2.1 SD), birth weight 2.2 kg (-2.7 SD), birth occipitofrontal circumference 32.5cm (-0.7 SD); present height 120.4cm (-2.3 SD), present weight 26.5kg (-0.7 SD), BMI 18.3 (+1.0 SD), present occipitofrontal circumference 51.5cm (-0.9 SD); speech delayed (HP:0000750); small hands (HP:0200055); single palmar crease (HP:0000954); brachydactyly (HP:000156); clinodactyly (HP:0030084); joint hypermobility (HP:0001382); ear abnormality (HP:0000598); irregular teeth (HP:0040079); no precocious puberty (-HP:0000826); no intellectual disability (-HP:0001249); muscular hypotonia (HP:0001252); dysmorphic face (HP:0001999); prominent forehead (HP:0011220)" "" "macrocephaly congenital" "41w" "nr" "" "" "" "small" "" "" "" "growth retardation (postnatal)" "asymmetric growth" "clinical SRS (Netchine Harbison-Score 5/6" "SRS-like" "0000023271" "00232" "00027198" "00006" "Isolated (sporadic)" "09y02m" "karyotpe 46XX, birth length 36.5cm (-6.0 SD), birth weight 1.2 kg (-4.6 SD), birth occipitofrontal circumference 30.0 cm (-2.0 SD); menarche 8y8m (normal 12.3y +/-1.3y); present height 125.5cm (-1.0 SD), present weight 22.3kg (-1.2 SD), BMI 14.2 (-1.1 SD), present occipitofrontal circumference 50.3cm (-1.5 SD); recurrent otitis media (HP:0000403); small hands (HP:0200055); no single palmar crease (-HP:0000954); no brachydactyly (-HP:000156); clinodactyly (HP:0030084); puberty, precocious (HP:0000826); no intellectual disability (-HP:0001249); no muscular hypotonia (-HP:0001252); dysmorphic face (HP:0001999); prominent forehead (HP:0011220)" "" "macrocephaly congenital" "37w" "nr" "" "" "" "small" "" "" "" "growth retardation (postnatal)" "asymmetric growth" "clinical SRS (Netchine Harbison-Score 5/6" "SRS-like" "0000059666" "00232" "00080090" "01594" "Unknown" "" "prominent forehead (HP:0011220)" "" "macrocephaly congenital" "" "feeding problems" "" "" "" "small" "" "" "" "growth retardation (postnatal)" "no asymmetric growth" "SRS (Netchine Harbison-Score 5/6)" "SRS" ## Screenings ## Do not remove or alter this header ## ## Count = 3 "{{id}}" "{{individualid}}" "{{variants_found}}" "{{owned_by}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{Screening/Technique}}" "{{Screening/Template}}" "{{Screening/Tissue}}" "{{Screening/Remarks}}" "0000027203" "00027197" "1" "00006" "00006" "2014-12-28 22:03:48" "00006" "2014-12-29 15:05:42" "SEQp" "DNA" "leukocytes" "" "0000027206" "00027198" "1" "00006" "00006" "2014-12-28 22:03:48" "00006" "2014-12-29 17:04:47" "SEQp" "DNA" "leukocytes" "" "0000080173" "00080090" "1" "01594" "00008" "2016-09-01 17:30:25" "" "" "arrayCNV; microscope; MLPA" "DNA" "" "" ## Screenings_To_Genes ## Do not remove or alter this header ## ## Count = 14 "{{screeningid}}" "{{geneid}}" "0000027203" "GNAS" "0000027203" "H19" "0000027203" "KCNQ1" "0000027203" "MEG3" "0000027203" "MEST" "0000027203" "PLAGL1" "0000027203" "SNRPN" "0000027206" "GNAS" "0000027206" "H19" "0000027206" "KCNQ1" "0000027206" "MEG3" "0000027206" "MEST" "0000027206" "PLAGL1" "0000027206" "SNRPN" ## Variants_On_Genome ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Count = 6 "{{id}}" "{{allele}}" "{{effectid}}" "{{chromosome}}" "{{position_g_start}}" "{{position_g_end}}" "{{type}}" "{{average_frequency}}" "{{owned_by}}" "{{VariantOnGenome/DBID}}" "{{VariantOnGenome/DNA}}" "{{VariantOnGenome/Frequency}}" "{{VariantOnGenome/Reference}}" "{{VariantOnGenome/Restriction_site}}" "{{VariantOnGenome/Published_as}}" "{{VariantOnGenome/Remarks}}" "{{VariantOnGenome/Genetic_origin}}" "{{VariantOnGenome/Segregation}}" "{{VariantOnGenome/dbSNP}}" "{{VariantOnGenome/VIP}}" "{{VariantOnGenome/Methylation}}" "{{VariantOnGenome/ISCN}}" "{{VariantOnGenome/DNA/hg38}}" "{{VariantOnGenome/ClinVar}}" "{{VariantOnGenome/ClinicalClassification}}" "{{VariantOnGenome/ClinicalClassification/Method}}" "0000050366" "10" "70" "11" "2023866" "2023866" "" "0" "00006" "H19_000001" "g.2023866|bsr" "" "{PMID:Kagami 2014:25351781}" "" "H19-DMR CG1" "normal methylation H19-DMR" "Somatic" "" "" "0" "0.51 (controls 0.37-0.60)" "" "" "" "likely pathogenic" "" "0000050367" "10" "70" "11" "2023856" "2023856" "" "0" "00006" "H19_000002" "g.2023856|bsr" "" "{PMID:Kagami 2014:25351781}" "" "H19-DMR CG2" "normal methylation H19-DMR" "Somatic" "" "" "0" "0.51 (controls 0.39-0.64)" "" "" "" "likely pathogenic" "" "0000050368" "10" "70" "11" "2023854" "2023854" "" "0" "00006" "H19_000003" "g.2023854|bsr" "" "{PMID:Kagami 2014:25351781}" "" "H19-DMR CG3" "normal methylation H19-DMR" "Somatic" "" "" "0" "0.49 (controls 0.36-0.57)" "" "" "" "likely pathogenic" "" "0000050369" "10" "70" "11" "2023852" "2023852" "" "0" "00006" "H19_000004" "g.2023852|bsr" "" "{PMID:Kagami 2014:25351781}" "" "H19-DMR CG4" "normal methylation H19-DMR" "Somatic" "" "" "0" "0.49 (controls 0.36-0.55)" "" "" "" "likely pathogenic" "" "0000050416" "10" "70" "11" "2023852" "2023866" "" "0" "00006" "H19_000000" "g.2023852_2023866|bsr" "" "{PMID:Kagami 2014:25351781}" "" "H19-DMR CG1-CG4" "normal methylation H19-DMR" "Somatic" "" "" "0" "normal levels" "" "" "" "likely pathogenic" "" "0000129107" "0" "50" "11" "0" "0" "" "0" "01594" "H19_000005" "g.(pter_1961646)_(2020450_2800000)del" "" "{PMID:Grønskov 2010:21278389}, for EUCID-SRS consortium" "" "46,XY arr[hg18] 11p15.5(1,918,222-1,977,026)x1 dn" "mosaic deletion, affecting H19, part of H19-ICR, endodermal enhancer, skeletal muscle/endordermal enhancer, seventh CTCF binding site" "Somatic" "" "" "0" "" "46,XY.mos arr[hg19] 11p15.5(1,961,646-2,020,450)x1 dn" "" "" "VUS" "" ## Variants_On_Transcripts ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Note: Only showing Variants_On_Transcript columns active for Genes H19 ## Count = 6 "{{id}}" "{{transcriptid}}" "{{effectid}}" "{{position_c_start}}" "{{position_c_start_intron}}" "{{position_c_end}}" "{{position_c_end_intron}}" "{{VariantOnTranscript/DNA}}" "{{VariantOnTranscript/RNA}}" "{{VariantOnTranscript/Protein}}" "{{VariantOnTranscript/Exon}}" "0000050366" "00000237" "70" "0" "" "0" "" "n.-4801bsrC" "r.=" "-" "_1" "0000050367" "00000237" "70" "0" "" "0" "" "n.-4791bsrC" "r.=" "-" "_1" "0000050368" "00000237" "70" "0" "" "0" "" "n.-4789bsrC" "r.=" "-" "_1" "0000050369" "00000237" "70" "0" "" "0" "" "n.-4787bsrC" "r.=" "-" "_1" "0000050416" "00000237" "70" "0" "" "0" "" "n.-4801_-4787bsrC" "r.=" "-" "_1" "0000129107" "00000237" "50" "1" "0" "1" "0" "n.0" "r.0" "-" "" ## Screenings_To_Variants ## Do not remove or alter this header ## ## Count = 6 "{{screeningid}}" "{{variantid}}" "0000027203" "0000050366" "0000027203" "0000050367" "0000027203" "0000050368" "0000027203" "0000050369" "0000027206" "0000050416" "0000080173" "0000129107"