### LOVD-version 3000-30b ### Full data download ### To import, do not remove or alter this header ### ## Filter: (gene_public = KDM2A) # charset = UTF-8 ## Genes ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{name}}" "{{chromosome}}" "{{chrom_band}}" "{{imprinting}}" "{{refseq_genomic}}" "{{refseq_UD}}" "{{reference}}" "{{url_homepage}}" "{{url_external}}" "{{allow_download}}" "{{id_hgnc}}" "{{id_entrez}}" "{{id_omim}}" "{{show_hgmd}}" "{{show_genecards}}" "{{show_genetests}}" "{{show_orphanet}}" "{{note_index}}" "{{note_listing}}" "{{refseq}}" "{{refseq_url}}" "{{disclaimer}}" "{{disclaimer_text}}" "{{header}}" "{{header_align}}" "{{footer}}" "{{footer_align}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{updated_by}}" "{{updated_date}}" "KDM2A" "lysine demethylase 2A" "11" "q13.2" "unknown" "NC_000011.9" "UD_145627734154" "" "https://www.LOVD.nl/KDM2A" "" "1" "13606" "22992" "605657" "1" "1" "1" "1" "Establishment of this gene variant database (LSDB) was performed by Johan den Dunnen, supported by Global Variome." "" "g" "https://databases.lovd.nl/shared/refseq/KDM2A_codingDNA.html" "1" "" "" "-1" "" "-1" "00000" "2017-08-08 00:00:00" "00006" "2026-01-03 11:13:20" "00006" "2026-01-03 11:36:43" ## Transcripts ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{geneid}}" "{{name}}" "{{id_mutalyzer}}" "{{id_ncbi}}" "{{id_ensembl}}" "{{id_protein_ncbi}}" "{{id_protein_ensembl}}" "{{id_protein_uniprot}}" "{{remarks}}" "{{position_c_mrna_start}}" "{{position_c_mrna_end}}" "{{position_c_cds_end}}" "{{position_g_mrna_start}}" "{{position_g_mrna_end}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00024644" "KDM2A" "lysine (K)-specific demethylase 2A, transcript variant 1" "001" "NM_012308.2" "" "NP_036440.1" "" "" "" "-864" "6516" "3489" "66886740" "67025553" "00000" "2017-08-08 13:19:41" "" "" ## Diseases ## Do not remove or alter this header ## ## Count = 2 "{{id}}" "{{symbol}}" "{{name}}" "{{inheritance}}" "{{id_omim}}" "{{tissues}}" "{{features}}" "{{remarks}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00198" "?" "unclassified / mixed" "" "" "" "" "" "00006" "2013-09-13 14:21:47" "00006" "2024-11-23 09:38:12" "05611" "NDD" "neurodevelopmental disorder (NDD)" "" "" "" "" "" "00006" "2019-06-19 12:27:20" "00006" "2024-12-13 11:12:21" ## Genes_To_Diseases ## Do not remove or alter this header ## ## Count = 1 "{{geneid}}" "{{diseaseid}}" "KDM2A" "05611" ## Individuals ## Do not remove or alter this header ## ## Count = 20 "{{id}}" "{{fatherid}}" "{{motherid}}" "{{panelid}}" "{{panel_size}}" "{{license}}" "{{owned_by}}" "{{Individual/Reference}}" "{{Individual/Remarks}}" "{{Individual/Gender}}" "{{Individual/Consanguinity}}" "{{Individual/Origin/Geographic}}" "{{Individual/Age_of_death}}" "{{Individual/VIP}}" "{{Individual/Data_av}}" "{{Individual/Treatment}}" "{{Individual/Origin/Population}}" "{{Individual/Individual_ID}}" "00311919" "" "" "" "1" "" "00006" "{PMID:Faundes 2018:29276005}" "" "" "" "(United Kingdom (Great Britain))" "" "0" "" "" "" "" "00471715" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "F" "" "" "" "0" "" "" "" "Pat1" "00471716" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "United States" "" "0" "" "" "" "Pat2" "00471717" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "Anglo-Celtic" "Pat3" "00471718" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "F" "" "Afghanistan" "" "0" "" "" "" "Pat4" "00471719" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "F" "" "" "" "0" "" "" "" "Pat5" "00471720" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat6" "00471721" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "F" "" "" "" "0" "" "" "" "Pat7" "00471722" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "F" "" "" "" "0" "" "" "" "Pat8" "00471723" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat9" "00471724" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat10" "00471725" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat11" "00471726" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat12" "00471727" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected fetus, unaffected non-carrier parents" "F" "" "" "" "0" "" "" "" "Pat13" "00471728" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat14" "00471729" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat15" "00471730" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected parents" "M" "" "" "" "0" "" "" "" "Pat16" "00471731" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat17" "00471732" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "2-generation family, 1 affected, unaffected non-carrier parents" "M" "" "" "" "0" "" "" "" "Pat18" "00471733" "" "" "" "1" "" "00006" "{PMID:Anderson 2026:41468891}" "adopted child" "F" "" "" "" "0" "" "" "" "PatS19" ## Individuals_To_Diseases ## Do not remove or alter this header ## ## Count = 20 "{{individualid}}" "{{diseaseid}}" "00311919" "00198" "00471715" "05611" "00471716" "05611" "00471717" "05611" "00471718" "05611" "00471719" "05611" "00471720" "05611" "00471721" "05611" "00471722" "05611" "00471723" "05611" "00471724" "05611" "00471725" "05611" "00471726" "05611" "00471727" "05611" "00471728" "05611" "00471729" "05611" "00471730" "05611" "00471731" "05611" "00471732" "05611" "00471733" "05611" ## Phenotypes ## Do not remove or alter this header ## ## Note: Only showing Phenotype columns active for Diseases 00198, 05611 ## Count = 19 "{{id}}" "{{diseaseid}}" "{{individualid}}" "{{owned_by}}" "{{Phenotype/Inheritance}}" "{{Phenotype/Age}}" "{{Phenotype/Additional}}" "{{Phenotype/Age/Onset}}" "{{Phenotype/Age/Diagnosis}}" "{{Phenotype/Onset}}" "{{Phenotype/Protein}}" "{{Phenotype/Tumor/MSI}}" "{{Phenotype/Enzyme/CPK}}" "{{Phenotype/Heart/Myocardium}}" "{{Phenotype/Lung}}" "{{Phenotype/Diagnosis/Definite}}" "{{Phenotype/Diagnosis/Initial}}" "{{Phenotype/Diagnosis/Criteria}}" "0000356524" "05611" "00471715" "00006" "Isolated (sporadic)" "5y3m" "see paper; ..., normal pregnancy; birth 40w; neonatal poor feeding; birth length 50cm (P25-50), weight 4080g (P91-98); 5y3m-length 92.1cm (T" "" "" "" "KDM2A(NM_012308.3):c.2827C>T (p.P943S)" "VKGL data sharing initiative Nederland" "CLASSIFICATION record" "" "" "" "" "" "g.67252752C>T" "" "VUS" "" "0000694825" "21" "50" "11" "67021068" "67021068" "subst" "4.06322E-6" "00006" "KDM2A_000004" "g.67021068C>A" "" "{PMID:Faundes 2018:29276005}" "" "" "causative variant identified in ATP6V1B2" "Germline" "" "" "0" "" "" "g.67253597C>A" "" "VUS" "ACMG" "0001053955" "0" "30" "11" "66995590" "66995590" "subst" "0.000223361" "01804" "KDM2A_000005" "g.66995590G>A" "" "" "" "KDM2A(NM_012308.3):c.1040G>A (p.(Arg347His))" "VKGL data sharing initiative Nederland" "CLASSIFICATION record" "" "" "" "" "" "" "" "likely benign" "" "0001062241" "0" "70" "11" "66975095" "66975095" "subst" "0" "00006" "KDM2A_000007" "g.66975095A>G" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PS3_MOD, PM2, PP2, PP3" "De novo" "" "" "0" "" "" "g.67207624A>G" "" "likely pathogenic (dominant)" "ACMG" "0001062242" "0" "70" "11" "66985218" "66985218" "subst" "0" "00006" "KDM2A_000009" "g.66985218C>T" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PS3_MOD , PM2, PP2, PP3" "De novo" "" "" "0" "" "" "g.67217747C>T" "" "likely pathogenic (dominant)" "ACMG" "0001062243" "0" "70" "11" "66986767" "66986767" "subst" "0" "00006" "KDM2A_000010" "g.66986767C>T" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2, PP3" "De novo" "" "" "0" "" "" "g.67219296C>T" "" "likely pathogenic (dominant)" "ACMG" "0001062244" "0" "70" "11" "66986873" "66986873" "subst" "0" "00006" "KDM2A_000011" "g.66986873G>A" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM, PP2, PP3" "De novo" "" "" "0" "" "" "g.67219402G>A" "" "likely pathogenic (dominant)" "ACMG" "0001062245" "0" "70" "11" "67012667" "67012667" "subst" "0" "00006" "KDM2A_000012" "g.67012667T>G" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2" "De novo" "" "" "0" "" "" "g.67245196T>G" "" "VUS" "ACMG" "0001062246" "0" "70" "11" "67012799" "67012799" "subst" "0" "00006" "KDM2A_000015" "g.67012799G>A" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2, PP3" "De novo" "" "" "0" "" "" "g.67245328G>A" "" "likely pathogenic (dominant)" "ACMG" "0001062247" "0" "70" "11" "67012868" "67012868" "subst" "0" "00006" "KDM2A_000016" "g.67012868T>C" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2, PP3" "De novo" "" "" "0" "" "" "g.67245397T>C" "" "likely pathogenic (dominant)" "ACMG" "0001062248" "0" "70" "11" "67012892" "67012892" "subst" "0" "00006" "KDM2A_000017" "g.67012892G>C" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2, PP3" "De novo" "" "" "0" "" "" "g.67245421G>C" "" "likely pathogenic (dominant)" "ACMG" "0001062249" "0" "70" "11" "67017828" "67017828" "subst" "0" "00006" "KDM2A_000019" "g.67017828A>G" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2" "De novo" "" "" "0" "" "" "g.67250357A>G" "" "VUS" "ACMG" "0001062250" "0" "70" "11" "67017829" "67017829" "subst" "0" "00006" "KDM2A_000020" "g.67017829G>T" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PM2, PP2" "De novo" "" "" "0" "" "" "g.67250358G>T" "" "VUS" "ACMG" "0001062251" "0" "70" "11" "67017932" "67017932" "subst" "0" "00006" "KDM2A_000022" "g.67017932C>A" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PS2_MOD, PS3_MOD, PM2, PP2" "De novo" "" "" "0" "" "" "g.67250461C>A" "" "likely pathogenic (dominant)" "ACMG" "0001062252" "0" "90" "11" "66947565" "66947565" "subst" "0" "00006" "KDM2A_000006" "g.66947565C>T" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PS2_MOD, PM2P" "De novo" "" "" "0" "" "" "g.67180094C>T" "" "pathogenic (dominant)" "ACMG" "0001062253" "0" "90" "11" "66982903" "66982903" "subst" "0" "00006" "KDM2A_000008" "g.66982903C>G" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PS2_MOD, PM2" "De novo" "" "" "0" "" "" "g.67215432C>G" "" "pathogenic (dominant)" "ACMG" "0001062254" "0" "90" "11" "67012772" "67012772" "dup" "0" "00006" "KDM2A_000013" "g.67012772dup" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PS2_MOD, PM2" "De novo" "" "" "0" "" "" "g.67245301dup" "" "pathogenic (dominant)" "ACMG" "0001062255" "0" "90" "11" "67012773" "67012773" "del" "0" "00006" "KDM2A_000014" "g.67012773del" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PS2_MOD, PM2" "De novo" "" "" "0" "" "" "g.67245302del" "" "pathogenic (dominant)" "ACMG" "0001062256" "0" "70" "11" "67017905" "67017905" "dup" "0" "00006" "KDM2A_000021" "g.67017905dup" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PM2" "Germline/De novo (untested)" "" "" "0" "" "" "g.67250434dup" "" "likely pathogenic (dominant)" "ACMG" "0001062257" "0" "90" "11" "67018168" "67018168" "del" "0" "00006" "KDM2A_000023" "g.67018168del" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PS2_MOD, PM2" "De novo" "" "" "0" "" "" "g.67250697del" "" "pathogenic (dominant)" "ACMG" "0001062258" "0" "90" "11" "67020205" "67020208" "dup" "0" "00006" "KDM2A_000024" "g.67020205_67020208dup" "" "{PMID:Anderson 2026:41468891}" "" "" "ACMG PVS1, PS2_MOD, PM2" "De novo" "" "" "0" "" "" "g.67252734_67252737dup" "" "pathogenic (dominant)" "ACMG" "0001062259" "0" "50" "11" "67017824" "67017824" "subst" "0" "00006" "KDM2A_000018" "g.67017824G>A" "" "{PMID:Anderson 2026:41468891}" "" "" "" "Germline/De novo (untested)" "" "" "0" "" "" "g.67250353G>A" "" "VUS" "" ## Variants_On_Transcripts ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Note: Only showing Variants_On_Transcript columns active for Genes KDM2A ## Count = 22 "{{id}}" "{{transcriptid}}" "{{effectid}}" "{{position_c_start}}" "{{position_c_start_intron}}" "{{position_c_end}}" "{{position_c_end_intron}}" "{{VariantOnTranscript/DNA}}" "{{VariantOnTranscript/RNA}}" "{{VariantOnTranscript/Protein}}" "{{VariantOnTranscript/Exon}}" "0000613626" "00024644" "50" "2827" "0" "2827" "0" "c.2827C>T" "r.(?)" "p.(Pro943Ser)" "" "0000694825" "00024644" "50" "3077" "0" "3077" "0" "c.3077C>A" "r.(?)" "p.(Pro1026Gln)" "" "0001053955" "00024644" "30" "1040" "0" "1040" "0" "c.1040G>A" "r.(?)" "p.(Arg347His)" "" "0001062241" "00024644" "70" "422" "0" "422" "0" "c.422A>G" "r.(?)" "p.(Tyr141Cys)" "6" "0001062242" "00024644" "70" "704" "0" "704" "0" "c.704C>T" "r.(?)" "p.(Pro235Leu)" "9" "0001062243" "00024644" "70" "850" "0" "850" "0" "c.850C>T" "r.(?)" "p.(His284Tyr)" "10" "0001062244" "00024644" "70" "956" "0" "956" "0" "c.956G>A" "r.(?)" "p.(Arg319Gln)" "10" "0001062245" "00024644" "70" "1571" "0" "1571" "0" "c.1571T>G" "r.(?)" "p.(Phe524Cys)" "14" "0001062246" "00024644" "70" "1703" "0" "1703" "0" "c.1703G>A" "r.(?)" "p.(Arg568Gln)" "14" "0001062247" "00024644" "70" "1772" "0" "1772" "0" "c.1772T>C" "r.(?)" "p.(Met591Thr)" "14" "0001062248" "00024644" "70" "1796" "0" "1796" "0" "c.1796G>C" "r.(?)" "p.(Arg599Pro)" "14" "0001062249" "00024644" "70" "2327" "0" "2327" "0" "c.2327A>G" "r.(?)" "p.(Lys776Arg)" "17" "0001062250" "00024644" "70" "2328" "0" "2328" "0" "c.2328G>T" "r.(?)" "p.(Lys776Asn)" "17" "0001062251" "00024644" "70" "2431" "0" "2431" "0" "c.2431C>A" "r.(?)" "p.(His811Asn)" "17" "0001062252" "00024644" "90" "58" "0" "58" "0" "c.58C>T" "r.(?)" "p.(Arg20Ter)" "3" "0001062253" "00024644" "90" "579" "0" "579" "0" "c.579C>G" "r.(?)" "p.(Tyr193Ter)" "7" "0001062254" "00024644" "90" "1676" "0" "1676" "0" "c.1676dup" "r.(?)" "p.(Ile560AspfsTer71)" "14" "0001062255" "00024644" "90" "1677" "0" "1677" "0" "c.1677del" "r.(?)" "p.(Ile560LeufsTer32)" "14" "0001062256" "00024644" "70" "2404" "0" "2404" "0" "c.2404dup" "r.(?)" "p.(Thr802AsnfsTer49)" "17" "0001062257" "00024644" "90" "2667" "0" "2667" "0" "c.2667del" "r.(?)" "p.(Asp889GlufsTer47)" "17" "0001062258" "00024644" "90" "2809" "0" "2812" "0" "c.2809_2812dup" "r.(?)" "p.(Cys938Ter)" "18" "0001062259" "00024644" "50" "2323" "0" "2323" "0" "c.2323G>A" "r.(?)" "p.(Glu775Lys)" "17" ## Screenings_To_Variants ## Do not remove or alter this header ## ## Count = 20 "{{screeningid}}" "{{variantid}}" "0000313091" "0000694825" "0000473385" "0001062241" "0000473386" "0001062242" "0000473387" "0001062243" "0000473388" "0001062244" "0000473389" "0001062245" "0000473390" "0001062246" "0000473391" "0001062247" "0000473392" "0001062248" "0000473393" "0001062249" "0000473394" "0001062250" "0000473395" "0001062251" "0000473396" "0001062252" "0000473397" "0001062253" "0000473398" "0001062254" "0000473399" "0001062255" "0000473400" "0001062256" "0000473401" "0001062257" "0000473402" "0001062258" "0000473403" "0001062259"