Individual #00000057

ID_report -
Reference PubMed: Bell 2011
Remarks -
Gender -
Consanguinity -
Country -
Population -
Age at death -
VIP -
Data_av -
Treatment -
Panel size 1
Diseases -
Owner name Global Variome, with Curator vacancy
Database submission license No license selected
Created by Gerard C.P. Schaafsma


Stop! No phenotypes found for this individual!



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000000057 DNA SEQ-NG - - ALDOB, ATM, ATP7B, DPYD, ERCC6, ETFB, GAA, IGHMBP2, LAMA2, NHLRC1, NPHS1, SERPINA1 16 Global Variome, with Curator vacancy



Variants

16 entries on 1 page. Showing entries 1 - 16.
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Chr     

Allele     

Effect     

Classification method     

Clinical classification     

AscendingDNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Owner     

Gene     

Codon change     

IDbase Accession Number     

VariO/DNA     

VariO/Protein     

VariO/RNA     

Exon     

DNA change (cDNA)     

Haplotype     

RNA change     

Protein     

P-domain     

Exon_old     

DNA/Legacy     

Function/GVS     

Predict/AGVGD     

Predict/Grantham     

Predict/MutationTaster     

Predict/PolyPhen     

Predict/PolyPhenScore     

Predict/SIFT     

Predicted     

Type/DNA     

Conservation     

CpG     

Enzyme activity     

mRNA level     

Predict/CADD     

Predict/Splice     

Legacy protein change     

Protein level     
1 Unknown ?/. - VUS g.97547947T>A g.97082391T>A - - DPYD_000004 - - - rs67376798 Germline - - - 0 - Gerard C.P. Schaafsma DPYD - - - - - 22 NM_000110.3:c.2846A>T - r.(?) p.(Asp949Val) - - - - - - - - - - - - - - - - - - - -
6 Unknown ?/. - VUS g.18122506G>A g.18122275G>A - - NHLRC1_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma NHLRC1 - - - - - - NM_198586.2:c.332C>T - r.(?) p.(Pro111Leu) - - - - - - - - - - - - - - - - - - - -
6 Unknown ?/. - VUS g.129635800G>A g.129314655G>A - - LAMA2_000064 - - - - Germline - - - 0 - Gerard C.P. Schaafsma LAMA2 - - - - - 24 NM_000426.3:c.3412G>A - r.(?) p.(Val1138Met) - - - - - - - - - - - - - - - - - - - -
9 Unknown ?/. - VUS g.104187213C>T g.101424931C>T - - ALDOB_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma ALDOB - - - - - - NM_000035.3:c.911G>A - r.(?) p.(Arg304Gln) - - - - - - - - - - - - - - - - - - - -
10 Unknown ?/. - VUS g.50678470_50678471del g.49470424_49470425del chr10:g.50348475_50348476del - ERCC6_000002 - - - - Germline - - - - - Gerard C.P. Schaafsma ERCC6, HTT - - - - - 2i NM_000124.2:c.3537_3538del, NM_002111.6:c.348-2680C= - r.(?) p.(Tyr1179*), p.(=) - - - - - - - - - - - - - - - - - - - -
10 Unknown ?/. - VUS g.50690735G>A g.49482689G>A - - ERCC6_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma ERCC6, HTT, RPGR - - - - - 2i, 12 NM_000124.2:c.2167C>T, NM_002111.6:c.348-2680C>G, NM_001034853.1:c.3009 _3038del - r.(?), r.? p.(Gln723*), p.(=), p.(Gly1005_Glu1014del) - - - - - - - - - - - - - - - - - - - -
10 Unknown ?/. - VUS g.50690735G>T g.49482689G>T - - ERCC6_000004 Not known correct genotype - - - Germline - - - - - Gerard C.P. Schaafsma ERCC6, HTT - - - - - 2i NM_000124.2:c.2167C>A, NM_002111.6:c.348-2680C>G - r.(?) p.(Gln723Lys), p.(=) - - - - - - - - - - - - - - - - - - - -
11 Unknown ?/. - VUS g.68705674C>A g.68938206C>A - - IGHMBP2_000003 - - - - Germline - - - 0 - Gerard C.P. Schaafsma IGHMBP2 - - - - - 14 NM_002180.2:c.2636C>A - r.(?) p.(Thr879Lys) - - - - - - - - - - - - - - - - - - - -
11 Unknown ?/. - VUS g.108098576C>G g.108227849C>G - - ATM_000007 - - - - Germline - - - - - Gerard C.P. Schaafsma ATM - - - - - - NM_000051.3:c.146C>G - r.(?) p.(Ser49Cys) - - - - - - - - - - - - - - - - - - - -
13 Unknown ?/. - VUS g.52515354A>G g.51941218A>G - - ATP7B_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma ATP7B - - - - - - NM_000053.3:c.3419T>C - r.(?) p.(Val1140Ala) - - - - - - - - - - - - - - - - - - - -
14 Both (homozygous) ?/. - VUS g.94844843T>G g.94378506T>G - - SERPINA1_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma SERPINA1 - - - - - - NM_001127701.1:c.1200A>C - r.(?) p.(Glu400Asp) - - - - - - - - - - - - - - - - - - - -
15 Unknown -?/-? - likely benign g.91560188C>T g.91016958C>T - - VPS33B_000216 - - - - Unknown - - - 0 - Paul Gissen VPS33B - - - - - 3i NM_018668.3:c.239+5G>A - r.spl? p.? - - - - - - - - - - - - - - - - - - - -
17 Unknown ?/. - VUS g.78078656G>A g.80104857G>A - - GAA_000003 - - - - Germline - - - - - Gerard C.P. Schaafsma GAA - - - - - 2 NM_000152.3:c.271G>A - r.(?) p.(Asp91Asn) - - - - - - - - - - - - - - - - - - - -
19 Unknown ?/. - VUS g.36322601T>C g.35831699T>C - - NPHS1_000002 - - - - Germline - - - - - Gerard C.P. Schaafsma NPHS1 - - - - - - NM_004646.3:c.3230A>G - r.(?) p.(Asn1077Ser) - - - - - - - - - - - - - - - - - - - -
19 Unknown ?/. - VUS g.36342212C>T g.35851310C>T - - NPHS1_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma NPHS1 - - - - - - NM_004646.3:c.349G>A - r.(?) p.(Glu117Lys) - - - - - - - - - - - - - - - - - - - -
19 Unknown ?/. - VUS g.51850290G>A g.51347036G>A - - ETFB_000001 - - - - Germline - - - - - Gerard C.P. Schaafsma ETFB - - - - - - NM_001014763.1:c.734C>T, NM_001985.2:c.461C>T - r.(?) p.(Thr245Met), p.(Thr154Met) - - - - - - - - - - - - - - - - - - - -
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