Individual #00025872

ID_report -
Reference -
Remarks reference haplotype
Gender -
Consanguinity -
Country - (not applicable)
Population -
Age at death -
VIP 0
Data_av -
Treatment -
Panel size 1
Diseases Healthy/Control
Owner name Johan den Dunnen
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen


Stop! No phenotypes found for this individual!



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000025874 DNA SEQ - - TPMT 6 Johan den Dunnen



Variants

6 entries on 1 page. Showing entries 1 - 6.
Legend   How to query  

Chr     

Allele     

Effect     

Classification method     

Clinical classification     

AscendingDNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Owner     

Gene     

Codon change     

IDbase Accession Number     

VariO/DNA     

VariO/Protein     

VariO/RNA     

Exon     

DNA change (cDNA)     

Haplotype     

RNA change     

Protein     

P-domain     

Exon_old     

DNA/Legacy     

Function/GVS     

Predict/AGVGD     

Predict/Grantham     

Predict/MutationTaster     

Predict/PolyPhen     

Predict/PolyPhenScore     

Predict/SIFT     

Predicted     

Type/DNA     

Conservation     

CpG     

Enzyme activity     

mRNA level     

Predict/CADD     

Predict/Splice     

Legacy protein change     

Protein level     
6 Unknown -?/. - likely benign g.18130918T>C g.18130687T>C - - TPMT_000031 reference haplotype TPMT*3E; reduced activity - - rs1142345 Germline - - - 0 - Johan den Dunnen TPMT - - - - - 9 NM_000367.2:c.719A>G TPMT*3E r.(?) p.(Tyr240Cys) - - - - - - - - - - - - - - - - - - - -
6 Unknown -?/. - likely benign g.18139214G>A g.18138983G>A - - TPMT_000011 reference haplotype TPMT*3E - - rs2842934 Germline - - - 0 - Johan den Dunnen TPMT - - - - - 6 NM_000367.2:c.474C>T TPMT*3E r.(?) p.(=) - - - - - - - - - - - - - - - - - - - -
6 Unknown -?/. - likely benign g.18139228C>T g.18138997C>T - - TPMT_000030 reference haplotype TPMT*3E - - rs1800460 Germline - - - 0 - Johan den Dunnen TPMT - - - - - 6 NM_000367.2:c.460G>A TPMT*3E r.(?) p.(Ala154Thr) - - - - - - - - - - - - - - - - - - - -
6 Unknown -?/. - likely benign g.18143769A>G g.18143538A>G - - TPMT_000035 reference haplotype TPMT*3E - - rs2518463 Germline - - - 0 - Johan den Dunnen TPMT - - - - - 4i NM_000367.2:c.366+58T>C TPMT*3E r.(=) p.(=) - - - - - - - - - - - - - - - - - - - -
6 Unknown -?/. - likely benign g.18148247T>A g.18148016T>A - - TPMT_000034 reference haplotype TPMT*3E - - rs12529220 Germline - - - 0 - Johan den Dunnen TPMT - - - - - 2i NM_000367.2:c.141-101A>T TPMT*3E r.(=) p.(=) - - - - - - - - - - - - - - - - - - - -
6 Unknown +/. - benign (!) g.18149105A>T g.18148874A>T - - TPMT_000033 reference haplotype TPMT*3E - - rs3931660 Germline - - - 0 - Johan den Dunnen TPMT - - - - - 2i NM_000367.2:c.140+114T>A TPMT*3E r.(=) p.(=) - - - - - - - - - - - - - - - - - - - -
Legend   How to query