Individual #00081123

ID_report -
Reference Hendriks, RW; pers. comm.
Remarks -
Gender M
Consanguinity ?
Country (Netherlands)
Population -
Age at death -
VIP 0
Data_av -
Treatment -
Panel size 1
Diseases XLA
Owner name Gerard C.P. Schaafsma


Phenotypes

agammaglobulinemia, X-linked (XLA, agammaglobulinemia, X-linked, type 1 (AGMX-1)) (XLA;AGMX-1)   Add phenotype for this disease

AscendingPhenotype ID     

Diagnosis/Initial     

Kinase activity     

Diagnosis/Definite     

IgA (g/l)     

IgE (g/l)     

IgG (g/l)     

IgG1 (g/l)     

IgG2 (g/l)     

IgG3 (g/l)     

IgG4 (g/l)     

IgM (g/l)     

Phenotype details     

Inheritance     

Age/Examination     

Age/Diagnosis     

Age/Onset     

Phenotype/Onset     

B cells (%)     

B cells surf Ig (%)     

CD3     

CD4     

CD8     

CD19     

CD20     

Protein     

Owner     
0000060698 - - - 0.07 0.5 2.2 1.56 0.17 - - 0.16 Diagnosis: mild XLA; Symptoms: growth retardation Familial 09y - - - - 0-1 - - - - - - Gerard C.P. Schaafsma



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000081235 DNA ? - - BTK 1 Gerard C.P. Schaafsma



Variants

1 entry on 1 page. Showing entry 1.
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Chr     

Allele     

Effect     

Classification method     

Clinical classification     

AscendingDNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Owner     

Gene     

Codon change     

IDbase Accession Number     

VariO/DNA     

VariO/Protein     

VariO/RNA     

Exon     

DNA change (cDNA)     

Haplotype     

RNA change     

Protein     

P-domain     

Exon_old     

DNA/Legacy     

Function/GVS     

Predict/AGVGD     

Predict/Grantham     

Predict/MutationTaster     

Predict/PolyPhen     

Predict/PolyPhenScore     

Predict/SIFT     

Predicted     

Type/DNA     

Conservation     

CpG     

Enzyme activity     

mRNA level     

Predict/CADD     

Predict/Splice     

Legacy protein change     

Protein level     
X Unknown +?/-? - likely pathogenic g.(?_100641050)_(100641212_?)[del(3000)] - - - BTK_000776 deletion of 3.5 kb encompassing exon 1, undefined borders Hendriks, RW; pers. comm., IDbase_AccNr: A0028 - - Unknown - - - 0 - Gerard C.P. Schaafsma BTK - - DNA deletion (VariO:0141) - - 1 NM_000061.2:c.(?_-193)_(-31_?)del(3500) - r.? p.? - - - - - - - - - - - - - - - - - - - -
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