Individual #00315885

ID_report Pat11
Reference PubMed: Beck 2020
Remarks -
Gender M
Consanguinity -
Country -
Population -
Age at death -
VIP 0
Data_av -
Treatment see paper
Panel size 1
Diseases ?
Owner name Johan den Dunnen
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen


Phenotypes

unclassified / mixed (?)   Add phenotype for this disease

AscendingPhenotype ID     

Diagnosis/Initial     

Diagnosis/Definite     

Phenotype details     

Inheritance     

Age/Examination     

Age/Diagnosis     

Age/Onset     

Phenotype/Onset     

Protein     

Tumor/MSI     

Diagnosis/Criteria     

Owner     
0000239630 myelodysplastic syndrome VEXAS relapsing polychonsritis; pulmonary infiltrates; ear/nose chondritis; deep vein thrombosis; bone marrow vacuoles; macrocytic anemia Isolated (sporadic) - - 53y - - - - Johan den Dunnen



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000317065 DNA SEQ;SEQ-NG - - UBA1 1 Johan den Dunnen



Variants

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Chr     

Allele     

Effect     

Classification method     

Clinical classification     

AscendingDNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Owner     

Gene     

IDbase Accession Number     

VariO/DNA     

VariO/Protein     

VariO/RNA     

Exon     

DNA change (cDNA)     

Haplotype     

RNA change     

Protein     

P-domain     

Exon_old     

Function/GVS     

Predict/AGVGD     

Predict/Grantham     

Predict/MutationTaster     

Predict/PolyPhen     

Predict/PolyPhenScore     

Predict/SIFT     

Predicted     

Type/DNA     

Conservation     

CpG     

Enzyme activity     

mRNA level     

Predict/CADD     

Predict/Splice     

Legacy protein change     

Protein level     
X Unknown +/. - pathogenic (!) g.47058451T>C g.47199052T>C - - UBA1_000070 somatic mosaicism PubMed: Beck 2020 - - Somatic - - - 0 - Johan den Dunnen UBA1 - - - - 3 NM_003334.3:c.122T>C - r.(?) p.(Met41Thr) - - - - - - - - - - - - - - - - - - -
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