Global Variome shared LOVD
ATOH1 (atonal homolog 1 (Drosophila))
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All individuals with variants in gene ATOH1
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
ID_report
: ID of the individual that can be publically shared, e.g. as listed in a publication
Reference
: reference to publication describing the individual/family, possibly giving more phenotypic details than listed in this database entry, incl. link to PubMed or other source, e.g. "den Dunnen ASHG2003 P2346"
Remarks
: remarks about the individual
Gender
: gender individual
All options:
? = unknown
- = not applicable
F = female
M = male
rF = raised as female
rM = raised as male
Consanguinity
: indicates whether the parents are related (consanguineous), not related (non-consanguineous) or whether consanguinity is not known (unknown)
All options:
no = non-consanguineous parents
yes = consanguineous parents
likely = consanguinity likely
? = unknown
- = not applicable
Country
: where (country) does the individual live/recently came from. Give additional details (population, specific sub-group) and when parents come from different countries in "Population". Belgium = individual lives in/recently came from Belgium, (France) = reported by laboratory in France, individual's country of origin not sure
All options:
? (unknown)
- (not applicable)
Afghanistan
(Afghanistan)
Albania
(Albania)
Algeria
(Algeria)
American Samoa
(American Samoa)
Andorra
(Andorra)
Angola
(Angola)
Anguilla
(Anguilla)
Antarctica
(Antarctica)
Antigua and Barbuda
(Antigua and Barbuda)
Argentina
(Argentina)
Armenia
(Armenia)
Aruba
(Aruba)
Australia
(Australia)
Austria
(Austria)
Azerbaijan
(Azerbaijan)
Bahamas
(Bahamas)
Bahrain
(Bahrain)
Bangladesh
(Bangladesh)
Barbados
(Barbados)
Belarus
(Belarus)
Belgium
(Belgium)
Belize
(Belize)
Benin
(Benin)
Bermuda
(Bermuda)
Bhutan
(Bhutan)
Bolivia
(Bolivia)
Bosnia and Herzegovina
(Bosnia and Herzegovina)
Botswana
(Botswana)
Bouvet Island
(Bouvet Island)
Brazil
(Brazil)
British Indian Ocean Territory
(British Indian Ocean Territory)
Brunei Darussalam
(Brunei Darussalam)
Bulgaria
(Bulgaria)
Burkina Faso
(Burkina Faso)
Burundi
(Burundi)
Cambodia
(Cambodia)
Cameroon
(Cameroon)
Canada
(Canada)
Cape Verde
(Cape Verde)
Cayman Islands
(Cayman Islands)
Central African Republic
(Central African Republic)
Central Europe
Chad
(Chad)
Chile
(Chile)
China
(China)
Christmas Island
(Christmas Island)
Cocos (Keeling Islands)
(Cocos (Keeling Islands))
Colombia
(Colombia)
Comoros
(Comoros)
Congo
(Congo)
Cook Islands
(Cook Islands)
Costa Rica
(Costa Rica)
Cote D'Ivoire (Ivory Coast)
(Cote D'Ivoire (Ivory Coast))
Croatia (Hrvatska)
(Croatia (Hrvatska))
Cuba
(Cuba)
Cyprus
(Cyprus)
Czech Republic
(Czech Republic)
Denmark
(Denmark)
Djibouti
(Djibouti)
Dominica
(Dominica)
Dominican Republic
(Dominican Republic)
East Timor
(East Timor)
Ecuador
(Ecuador)
Egypt
(Egypt)
El Salvador
(El Salvador)
England
(England)
Equatorial Guinea
(Equatorial Guinea)
Eritrea
(Eritrea)
Estonia
(Estonia)
Ethiopia
(Ethiopia)
Falkland Islands (Malvinas)
(Falkland Islands (Malvinas))
Faroe Islands
(Faroe Islands)
Fiji
(Fiji)
Finland
(Finland)
France
(France)
Gabon
(Gabon)
Gambia
(Gambia)
Georgia
(Georgia)
Germany
(Germany)
Ghana
(Ghana)
Gibraltar
(Gibraltar)
Greece
(Greece)
Greenland
(Greenland)
Grenada
(Grenada)
Guadeloupe
(Guadeloupe)
Guam
(Guam)
Guatemala
(Guatemala)
Guiana, French
(Guiana, French)
Guinea
(Guinea)
Guinea-Bissau
(Guinea-Bissau)
Guyana
(Guyana)
Haiti
(Haiti)
Heard and McDonald Islands
(Heard and McDonald Islands)
Honduras
(Honduras)
Hong Kong
(Hong Kong)
Hungary
(Hungary)
Iceland
(Iceland)
India
(India)
Indonesia
(Indonesia)
Iran
(Iran)
Iraq
(Iraq)
Ireland
(Ireland)
Israel
(Israel)
Italy
(Italy)
Jamaica
(Jamaica)
Japan
(Japan)
Jordan
(Jordan)
Kazakhstan
(Kazakhstan)
Kenya
(Kenya)
Kiribati
(Kiribati)
Korea
(Korea)
Korea, North (People's Republic)
(Korea, North (People's Republic))
Korea, South (Republic)
(Korea, South (Republic))
Kosovo
(Kosovo)
Kuwait
(Kuwait)
Kyrgyzstan (Kyrgyz Republic)
(Kyrgyzstan (Kyrgyz Republic))
Laos
(Laos)
Latvia
(Latvia)
Lebanon
(Lebanon)
Lesotho
(Lesotho)
Liberia
(Liberia)
Libya
(Libya)
Liechtenstein
(Liechtenstein)
Lithuania
(Lithuania)
Luxembourg
(Luxembourg)
Macau
(Macau)
Macedonia
(Macedonia)
Madagascar
(Madagascar)
Malawi
(Malawi)
Malaysia
(Malaysia)
Maldives
(Maldives)
Mali
(Mali)
Mallorca
(Mallorca)
Malta
(Malta)
Marshall Islands
(Marshall Islands)
Martinique
(Martinique)
Mauritania
(Mauritania)
Mauritius
(Mauritius)
Mayotte
(Mayotte)
Mexico
(Mexico)
Micronesia
(Micronesia)
Moldova
(Moldova)
Monaco
(Monaco)
Mongolia
(Mongolia)
Montserrat
(Montserrat)
Morocco
(Morocco)
Mozambique
(Mozambique)
Myanmar
(Myanmar)
Namibia
(Namibia)
Nauru
(Nauru)
Nepal
(Nepal)
Netherlands
(Netherlands)
Netherlands Antilles
(Netherlands Antilles)
Neutral Zone (Saudia Arabia/Iraq)
(Neutral Zone (Saudia Arabia/Iraq))
New Caledonia
(New Caledonia)
New Zealand
(New Zealand)
Nicaragua
(Nicaragua)
Niger
(Niger)
Nigeria
(Nigeria)
Niue
(Niue)
Norfolk Island
(Norfolk Island)
Northern Ireland
(Northern Ireland)
Northern Mariana Islands
(Northern Mariana Islands)
Norway
(Norway)
Oman
(Oman)
Pakistan
(Pakistan)
Palau
(Palau)
Palestine
(Palestine)
Panama
(Panama)
Papua New Guinea
(Papua New Guinea)
Paraguay
(Paraguay)
Peru
(Peru)
Philippines
(Philippines)
Pitcairn
(Pitcairn)
Poland
(Poland)
Polynesia, French
(Polynesia, French)
Portugal
(Portugal)
Puerto Rico
(Puerto Rico)
Qatar
(Qatar)
Reunion
(Reunion)
Romania
(Romania)
Russia
(Russia)
Russian Federation
(Russian Federation)
Rwanda
(Rwanda)
S. Georgia and S. Sandwich Isls.
(S. Georgia and S. Sandwich Isls.)
Saint Kitts and Nevis
(Saint Kitts and Nevis)
Saint Lucia
(Saint Lucia)
Saint Vincent and The Grenadines
(Saint Vincent and The Grenadines)
Samoa
(Samoa)
San Marino
(San Marino)
Sao Tome and Principe
(Sao Tome and Principe)
Saudi Arabia
(Saudi Arabia)
Scotland
(Scotland)
Senegal
(Senegal)
Serbia
(Serbia)
Seychelles
(Seychelles)
Sierra Leone
(Sierra Leone)
Singapore
(Singapore)
Slovakia (Slovak Republic)
(Slovakia (Slovak Republic))
Slovenia
(Slovenia)
Solomon Islands
(Solomon Islands)
Somalia
(Somalia)
South Africa
(South Africa)
Southern Territories, French
(Southern Territories, French)
Soviet Union (former)
(Soviet Union (former))
Spain
(Spain)
Sri Lanka
(Sri Lanka)
St. Helena, Ascension and Tristan da
Cunha
(St. Helena, Ascension and Tristan da
Cunha)
St. Pierre and Miquelon
(St. Pierre and Miquelon)
Sudan
(Sudan)
Sudan, South
(Sudan, South)
Suriname
(Suriname)
Svalbard and Jan Mayen Islands
(Svalbard and Jan Mayen Islands)
Swaziland
(Swaziland)
Sweden
(Sweden)
Switzerland
(Switzerland)
Syria
(Syria)
Taiwan
(Taiwan)
Tajikistan
(Tajikistan)
Tanzania
(Tanzania)
Thailand
(Thailand)
Togo
(Togo)
Tokelau
(Tokelau)
Tonga
(Tonga)
Trinidad and Tobago
(Trinidad and Tobago)
Tunisia
(Tunisia)
Turkey
(Turkey)
Turkmenistan
(Turkmenistan)
Turks and Caicos Islands
(Turks and Caicos Islands)
Tuvalu
(Tuvalu)
Uganda
(Uganda)
Ukraine
(Ukraine)
United Arab Emirates
(United Arab Emirates)
United Kingdom (Great Britain)
(United Kingdom (Great Britain))
United States
(United States)
Uruguay
(Uruguay)
US Minor Outlying Islands
(US Minor Outlying Islands)
Uzbekistan
(Uzbekistan)
Vanuatu
(Vanuatu)
Vatican City State (Holy See)
(Vatican City State (Holy See))
Venezuela
(Venezuela)
Viet Nam
(Viet Nam)
Virgin Islands (British)
(Virgin Islands (British))
Virgin Islands (US)
(Virgin Islands (US))
Wales
(Wales)
Wallis and Futuna Islands
(Wallis and Futuna Islands)
Western Sahara
(Western Sahara)
Yemen
(Yemen)
Yugoslavia
(Yugoslavia)
Zaire
(Zaire)
Zambia
(Zambia)
Zimbabwe
(Zimbabwe)
Population
: population the individual (or ancestors) belongs to; e.g. white, gypsy, Jewish-Ashkenazi, Africa-N, Sardinia, etc.
Age at death
: age at which the individual deceased (when applicable):
35y = 35 years
>43y = still alive at 43y
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
VIP
: individual/phenotype VIP-status was requested for matchmaking - need collaboration(s) to crack the case - please contact the submitter/curator. NOTE: to get VIP status ask the curator.
Data_av
: are additional data available upon request: e.g. pedigree (yes/no/?)
Treatment
: treatment of patient
Variants in genes
: The individual has variants for this gene.
Panel size
: Number of individuals this entry represents; e.g. 1 for an individual, 5 for a family with 5 affected members.
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
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!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
9 entries on 1 page. Showing entries 1 - 9.
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Legend
How to query
Individual ID
ID_report
Reference
Remarks
Gender
Consanguinity
Country
Population
Age at death
VIP
Data_av
Treatment
Disease
Phenotype details
Variants
Panel size
Owner
00361532
15DG1898
PubMed: Anazi 2017
simplex case
M
yes
Saudi Arabia
-
-
-
-
-
ID
not syndromic; global developmental delay, hypotonia, nystagmus, poor visual tracking, dysmorphism, pontocerebellar hypoplasia and brain atrophy (frontal lobe)
1
1
Johan den Dunnen
00472421
Pat1
PubMed: Bertola 2026
2-generation family, 1 affected, unaffected non-carrier parents
M
-
France
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; no hypotonia; 9m-sit; 15m-walk; ataxia; tremor; dysmetria; no dysarthria; delayed oral/written language development; no intellectual disability; normal behavior; normal schooling with educational adjustments; stable development; 3y-severe bilateral sensorineural deafness, many otitis before diagnosis; normal ears; oculomotor apraxia, hypermetropia; 3y-MRI brain short mesencephalon, small protuberance with linear T1 hypointense/T2 hyperintense signal abnormality, laterally enlarged medulla, with anterior cleft, small vermis (widening fissures), subtle dysplasia cerebellar hemispheres, normal vestibulocochlear nerve, normal cochlea, normal semi-circular canal
1
1
Johan den Dunnen
00472422
Pat2
PubMed: Bertola 2026
3-generation family, 1 affected, father/paternal grandmother hearing loss
M
-
France
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; 30m-walk; very slight ataxia; tremor; dysmetria; no dysarthria, language delay; no intellectual disability; normal behavior; normal but vocationnal schooling; stable development; 3y-mild-moderate bilateral sensorineural deafness; normal ears; no ophthalmological anomalies; 42y-MRI brain short mesencephalon, small triangular protuberance with linear signal on sagittal sections (hyposignal T1, hypersignal T2), laterally enlarged medulla, with anterior cleft, slight dysplasiavermis, subtle dysplasia cerebellar hemispheres, normal vestibulocochlear nerve, normal cochlea, normal semi-circular canal, absence of dorsal transverse pontine fibers and medial lemniscus
1
1
Johan den Dunnen
00472423
FamPat3
PubMed: Bertola 2026
3-generation family, 3 affected
M
-
France
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; no ataxia; no tremor; no dysmetria; no dysarthria; normal speech; no intellectual disability; normal behavior; schooling difficulties; stable development; 7y-mild bilateral sensorineural deafness; normal ears; 38y-MRI brain short mesencephalon, small protuberance with abnormal T1-w hypointense/T2-w hyperintense oblong area on sagittal sections, laterally enlarged medulla, with anterior cleft, vermian hypoplasia, normal cerebellar hemispheres, normal cochlea, normal semi-circular canal
1
3
Johan den Dunnen
00472424
FamPat4
PubMed: Bertola 2026
grandmother
F
-
France
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; no dysarthria; 15y-migraine (2-3 times a week); no intellectual disability; normal behavior; schooling difficulties; 3y-moderate bilateral sensorineural deafness, failed perinatal hearing screening; normal ears; 55y-MRI brain short mesencephalon, flattened protuberance with abnormal signal, laterally enlarged medulla, with anterior cleft, normal vermis, normal cerebellar hemispheres
1
1
Johan den Dunnen
00472425
FamPat5
PubMed: Bertola 2026
daugther
F
-
France
-
-
-
-
-
HL
see paper; ..., pregnancy small weight; hypotonia; <9m-sit; 19m-walk, mtor delay; slight balance troubles; no tremor; no dysmetria; no dysarthria; 2y-uncomplicated febrile seizure, 3y-uncomplicated febrile seizure; delayed language; intellectual disability (probably related to RNU4-2 pathogenic variant); normal behavior; learning difficulties; mild bilateral deafness; normal ears; no ophthalmological anomalies; 4y9m-MRI brain short mesencephalon, pontine hypoplasia with hyposignal T1, anteroposterior flattening medulla, vermian hypoplasia, slight hypoplasia cerebellar hemispheres, bilateral hypoplasia cochlear nerve with hypoplastic internal auditory canal, normal cochlea, normal semi-circular canal
1
1
Johan den Dunnen
00472426
Pat6
PubMed: Bertola 2026
2-generation family, 1 affected, unaffected non-carrier parents
M
-
-
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; no hypotonia; delayed sitting; 19m-walk; no ataxia; no tremor; dysmetria; dysarthria; impaired fine motor skills, frequent falling; speech delay (1y); no intellectual disability; impaired social interactions, impaired decision making; learning difficulties; 1m-moderate bilateral sensorineural deafness; normal ears; strabism; 5y4m-MRI brain short mesencephalon, thin pons, small protuberance with abnormal signal, accentuation bulbo-protuberantial groove, laterally enlarged medulla, with anterior cleft, vermian hypoplasia, normal cerebellar hemispheres, normal vestibulocochlear nerve, normal cochlea, normal semi-circular canal, absence of dorsal transverse pontine fibers and medial lemniscus
1
1
Johan den Dunnen
00472427
Pat7
PubMed: Bertola 2026
2-generation family, 1 affected, unaffected non-carrier parents
F
-
-
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; did not pass neonatal hearing screening; no hypotonia; normal sitting; 18m-walk; no ataxia; no tremor; no dysmetria; no dysarthria; 3.y3m-speech therapy, after speech clear; no intellectual disability; normal behavior; attends regular school, normal, no special needs; development age appropriate; 7m-moderate symmetric bilateral sensorineural "flat" hearing loss, failed neonatal hearing screening, problems with otitis media with effusion; normal ears; bilateral epicanthal folds; single palmar crease left hand; 2y-MRI brain short mesencephalon, flattened protuberance with abnormalT1-w hypointense/T2-w hyperintense oblong area on sagittal sections, laterally enlarged medulla, with anterior cleft, vermian hypoplasia, normal cerebellar hemispheres, bilateral hypoplasia cochlear nerve with hypoplastic internal auditory canal, normal cochlea, normal semi-circular canal
1
1
Johan den Dunnen
00472428
Pat8
PubMed: Bertola 2026
2-generation family, 1 affected, unaffected heterozygous carrier parents
F
-
France
-
-
-
-
-
HL
see paper; ..., normal pregnancy, normal delivery; hypotonia; nystagmus; not sitting; not walking; truncal ataxia; no tremor; no dysmetria; no speech; no speech; severe intellectual disability; severe behavioral anomalies, temper tantrums, aggressivity, inappropriate laughing, crying; development slow progress then stagnation, no regression; 5y-profound bilateral sensorineural deafness; normal ears; 2m-nystagmus, strabism; hypertelorism; 22y-MRI brain normal mesencephalon, major pons hypoplasia, absence protuberance’s bulging, hypoplasia medulla, antero posterior flattening medulla, severe vermian hypoplasia (near absence), hypodysplasia cerebellar hemispheres, normal vestibulocochlear nerve, normal cochlea, normal semi-circular canal
1
1
Johan den Dunnen
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