Phenotypes for disease #00007 (LCCS1 (contracture syndrome, lethal, congenital, type 1), OMIM:253310)

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Phenotype details: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)

Diagnosis/Initial: initial diagnosis, before molecular testing

Inheritance: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:

Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable

Age/Examination: age at which the individual was examined.

35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown

Diagnosis/Definite: phenotype individual after molecular testing (OMIM abbreviation)

Age/Diagnosis: age diagnosis was confirmed

35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown

Age/Onset: Age first symptoms disease appeared in individual:

35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown

Phenotype/Onset: individual's phenotype at Age/Onset described using HPO

Protein: result from protein staining

How to query this table

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Operator	Column type	Example	Matches
	Text	Arg	all entries containing 'Arg'
space	Text	Arg Ser	all entries containing 'Arg' and 'Ser'
\|	Text	Arg\|Ser	all entries containing 'Arg' or 'Ser'
!	Text	!fs	all entries not containing 'fs'
^	Text	^p.(Arg	all entries beginning with 'p.(Arg'
$	Text	Ser)$	all entries ending with 'Ser)'
=""	Text	=""	all entries with this field empty
=""	Text	="p.0"	all entries exactly matching 'p.0'
!=""	Text	!=""	all entries with this field not empty
!=""	Text	!="p.0"	all entries not exactly matching 'p.0?'
combination	Text	*\|Ter !fs	all entries containing '*' or 'Ter' but not containing 'fs'
	Date	2020	all entries matching the year 2020
\|	Date	2020-03\|2020-04	all entries matching March or April, 2020
!	Date	!2020-03	all entries not matching March, 2020
<	Date	<2020	all entries before the year 2020
<=	Date	<=2020-06	all entries in or before June, 2020
>	Date	>2020-06	all entries after June, 2020
>=	Date	>=2020-06-15	all entries on or after June 15th, 2020
combination	Date	2019\|2020 <2020-03	all entries in 2019 or 2020, and before March, 2020
	Numeric	23	all entries exactly matching 23
\|	Numeric	23\|24	all entries exactly matching 23 or 24
!	Numeric	!23	all entries not exactly matching 23
<	Numeric	<23	all entries lower than 23
<=	Numeric	<=23	all entries lower than, or equal to, 23
>	Numeric	>23	all entries higher than 23
>=	Numeric	>=23	all entries higher than, or equal to, 23
combination	Numeric	>=20 <30 !23	all entries with values from 20 to 29, but not equal to 23

Some more advanced examples:

Example	Matches
Asian	all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian	all entries containing 'Asian' but not containing 'Caucasian'
Asian\|African !Caucasian	all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"	all entries containing 'South Asian', but not containing 'South East Asian'

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33 entries on 1 page. Showing entries 1 - 33.

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How to query

Phenotype ID	Phenotype details	Diagnosis/Initial	Inheritance	Age/Examination	Diagnosis/Definite	Age/Diagnosis	Age/Onset	Phenotype/Onset	Protein	Owner	Individual ID
0000002021	mental retardation, myoclonic epilepsy, spasticity	-	Familial, X-linked recessive	-	-	-	-	-	-	Johan den Dunnen	00003181
0000002093	-	-	Isolated (sporadic)	-	-	-	-	-	-	Johan den Dunnen	00003254
0000028916	fetal akinesia syndrome (pterygia and joint contractures)	-	Familial, autosomal recessive	-	-	-	-	-	-	Hana Lango-Allen	00016592
0000073507	-	-	Familial, autosomal recessive	-	-	-	-	-	-	Karen Stals	00095112
0000232683	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306855
0000232684	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306856
0000232685	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306857
0000232686	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306858
0000232687	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306859
0000232688	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306860
0000232689	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306861
0000232690	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306862
0000232691	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306863
0000232692	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306864
0000232693	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306865
0000232694	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306866
0000232695	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306867
0000232696	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306868
0000232697	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306869
0000232698	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306870
0000232699	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306871
0000232700	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306872
0000232701	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306873
0000232702	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306874
0000232703	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306875
0000232704	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306876
0000232705	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306877
0000232706	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306878
0000232707	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306879
0000232708	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306880
0000232709	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306881
0000232710	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306882
0000232711	-	lethal motoneuron syndrome	Familial, autosomal recessive	-	LCCS1	-	-	-	-	Johan den Dunnen	00306883

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Global Variome shared LOVD

MAGEC1 (melanoma antigen family C, 1)