Global Variome shared LOVD
BRCA1 (breast cancer 1, early onset)
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Curators:
Maaike Vreeswijk
and
Johan den Dunnen
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Phenotypes for disease #00065 (Rett syndrome (Rett syndrome, congenital variant), OMIM:613454)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Protein
: result from protein staining
How to query this table
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Column type
Example
Matches
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all entries containing 'Arg'
space
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Text
!fs
all entries not containing 'fs'
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Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
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all entries ending with 'Ser)'
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Text
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all entries exactly matching 'p.0'
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all entries not exactly matching 'p.0?'
combination
Text
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all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
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Date
2020-03|2020-04
all entries matching March or April, 2020
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Date
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all entries not matching March, 2020
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Date
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all entries before the year 2020
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Date
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all entries in or before June, 2020
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Date
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all entries after June, 2020
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Date
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all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
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Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
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Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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36 entries on 1 page. Showing entries 1 - 36.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Inheritance
Age/Examination
Diagnosis/Definite
Age/Diagnosis
Age/Onset
Phenotype/Onset
Phenotype details
Protein
Owner
Individual ID
0000029734
-
Unknown
-
-
-
-
-
Rett syndrome - congenital
-
RettBASE
00039451
0000029949
-
Unknown
-
-
-
-
-
Rett syndrome - congenital
-
RettBASE
00039666
0000030038
-
Unknown
-
-
-
-
-
Rett syndrome - congenital
-
RettBASE
00039755
0000030164
-
Unknown
-
-
-
-
-
Rett syndrome - congenital
-
RettBASE
00039881
0000030984
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00040701
0000031236
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00040953
0000031629
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00041346
0000031635
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00041352
0000031640
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00041357
0000031837
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00041554
0000032250
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00041967
0000032251
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00041968
0000032591
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00042308
0000033374
-
Unknown
-
-
-
-
-
Rett syndrome - congenital
-
RettBASE
00043091
0000033676
-
Unknown
-
-
-
-
-
Rett syndrome - congenital onset
-
RettBASE
00043393
0000033729
-
Unknown
-
-
-
-
-
Rett syndrome - congenital onset
-
RettBASE
00043446
0000033980
-
Unknown
-
-
-
-
-
Rett syndrome - Congenital onset
-
RettBASE
00043697
0000050838
-
Unknown
-
-
-
-
-
-
-
Henk van Kranen
00064618
0000060610
-
Isolated (sporadic)
-
-
-
-
-
Rett syndrome, congenital variant (OMIM:613454)
-
Daniel Trujillano
00081041
0000090365
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114879
0000090381
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114917
0000090386
-
Unknown
-
-
-
-
-
Rett syndrome, variant, infantile spasms; Rett syndrome?
-
Emmelien Aten
00114927
0000090387
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114928
0000090388
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114929
0000090392
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114933
0000090414
-
Unknown
-
-
-
-
-
Rett syndrome, variant, infantile spasms; Rett syndrome?
-
Emmelien Aten
00114956
0000090417
-
Unknown
-
-
-
-
-
Rett syndrome, variant, infantile spasms; Rett syndrome?
-
Emmelien Aten
00114960
0000090418
-
Unknown
-
-
-
-
-
Rett syndrome, atypical; Rett syndrome?
-
Emmelien Aten
00114961
0000090419
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114962
0000090429
-
Unknown
-
-
-
-
-
Rett syndrome, variant, infantile spasms; Rett syndrome?
-
Emmelien Aten
00114973
0000090433
-
Unknown
-
-
-
-
-
Rett syndrome?
-
Emmelien Aten
00114885
0000090450
-
Unknown
08y?
-
-
02y?
-
Rett syndrome
-
Marianna Kouskou
00114887
0000302570
Rett/Rett-like syndrome
Isolated (sporadic)
05y10m
DEE72
06y10m
00y08m
8m
Microcephaly Hypotonia Gait disturbance Intellectual disability Absent speech Aggressive behavior Partial agenesis of the corpus callosum Absent septum pellucidum
not available
Edoardo Errichiello
00410464
0000322863
-
Isolated (sporadic)
-
1y
-
-
-
Delayed speech and language development, Delayed gross motor development, Impaired social interactions, Axial hypotonia, Abnormal intestine morphology, Chronic diarrhea, Delayed fine motor development
-
Andreas Laner
00432295
0000324436
-
Isolated (sporadic)
-
-
-
-
-
intellectual disability, developmental delay
-
Marketa Wayhelova
00434057
0000331428
-
Isolated (sporadic)
02y
-
-
-
-
Autistic behavior, Delayed speech and language development, Neurodevelopmental delay
-
Andreas Laner
00442049
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