Global Variome shared LOVD
PTPRD (protein tyrosine phosphatase, receptor type, D)
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Phenotypes for disease #00172 (SBCADD (2-methylbutyryl-CoA dehydrogenase deficiency (SBCADD)), OMIM:610006)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Protein
: result from protein staining
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
24 entries on 1 page. Showing entries 1 - 24.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Inheritance
Age/Examination
Diagnosis/Definite
Age/Onset
Phenotype/Onset
Phenotype details
Protein
Age/Diagnosis
Owner
Individual ID
0000000897
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001743
0000000898
-
Unknown
-
-
-
-
family analysis; no clinical symptoms
-
-
Division of Human Genetics, Innsbruck
00001744
0000000899
-
Unknown
-
-
-
-
clinical presentation
-
-
Division of Human Genetics, Innsbruck
00001745
0000000900
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001746
0000000901
-
Unknown
-
-
-
-
family analysis
-
-
Division of Human Genetics, Innsbruck
00001747
0000000902
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001748
0000000903
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001749
0000000904
-
Unknown
-
-
-
-
family analysis
-
-
Division of Human Genetics, Innsbruck
00001750
0000000905
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001751
0000000906
-
Unknown
-
-
-
-
unknown
-
-
Division of Human Genetics, Innsbruck
00001752
0000000907
-
Unknown
-
-
-
-
unknown
-
-
Division of Human Genetics, Innsbruck
00001753
0000000908
-
Unknown
-
-
-
-
unknown
-
-
Division of Human Genetics, Innsbruck
00001754
0000000909
-
Unknown
-
-
-
-
newborn screening; no clinical symptoms
-
-
Division of Human Genetics, Innsbruck
00001755
0000000910
-
Unknown
-
-
-
-
newborn screening; no clinical symptoms
-
-
Division of Human Genetics, Innsbruck
00001756
0000000911
-
Unknown
-
-
-
-
newborn screening; no clinical symptoms
-
-
Division of Human Genetics, Innsbruck
00001757
0000000912
-
Unknown
-
-
-
-
clinical presentation; developmental delay, simplified brain sulci pattern, microcephaly
-
-
Division of Human Genetics, Innsbruck
00001758
0000000913
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001759
0000000914
-
Familial
-
-
00y05m
-
clinical presentation; seizures (which stopped), speech development was significantly delayed, mental retardation
-
04y
Division of Human Genetics, Innsbruck
00001760
0000000915
-
Familial
-
-
00y06m
-
clinical presentation; seizures (which stopped from 10 months onwards), develompmental delay, hypotonia
-
00y06m
Division of Human Genetics, Innsbruck
00001761
0000000916
-
Familial
-
-
00y00m03d
-
clinical presentation; developmental delay, epilepsy
-
-
Division of Human Genetics, Innsbruck
00001762
0000000917
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001763
0000000918
-
Unknown
-
-
-
-
newborn screening
-
-
Division of Human Genetics, Innsbruck
00001764
0000000919
-
Familial
-
-
-
-
family analysis; no clinical symptoms
-
-
Division of Human Genetics, Innsbruck
00001765
0000143307
-
Familial, autosomal recessive
-
-
-
-
-
-
-
Belen Perez
00181054
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Legend
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