Global Variome shared LOVD
KIR3DL1 (killer cell immunoglobulin-like receptor, ...)
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Global Variome, with Curator vacancy
View all genes
View KIR3DL1 gene homepage
View graphs about the KIR3DL1 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene KIR3DL1
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene KIR3DL1
View all variants in gene KIR3DL1
Full data view for gene KIR3DL1
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene KIR3DL1
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene KIR3DL1
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene KIR3DL1
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Phenotypes for disease #00188 (TSC1 (tuberous sclerosis, type 1), OMIM:191100)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
TSC/Features
: select all features that apply
All options:
? = unknown
angiofibromas = angiofibromas (≥3, HP:0010615) or fibrous cephalic plaque
angiofibromas facial= facial angiofibromas (HP:0009720)
angiomyolipomas = angiomyolipomas (≥2, HP:0006772)
astrocytoma = subependymal giant cell astrocytoma (HP:0009718)
ADHD = attention deficit hyperactivity disorder (HP:0007018
autism = autism spectrum disorder (HP:0000729)
cysts renal = multiple renal cysts (HP:0000107)
cortical tubers = cortical tubers (HP:0009717)
dysplasias cortical = cortical dysplasias (HP:0002539, incl. tubers and cerebral white matter radial migration lines)
dysplasia renal= renal dysplasia (HP:0000110)
dental pits = dental enamel pits (>3, HP:0009722)
epilepsy = epilepsy (HP:0001250)
fibromas ungual = ungual fibromas (≥2, HP:0100804)
fibromas intraoral = intraoral fibromas (≥2)
hamartomas renal = renal hamartomas (HP:0008696)
hamartomas non-renal = non-renal hamartomas
hamartomas retinal = multiple retinal hamartomas (HP:0009594)
lymphangioleiomyomatosis = lymphangioleiomyomatosis (LAM, HP:0012798)
macules hypomelanotic = hypomelanotic macules (≥3, at least 5-mm diameter, HP:0009719)
nodules = subependymal nodules (HP:0009716)
renal cell carcinoma = renal cell carcinoma (HP:0005584)
retinal achromatic patch = retinal achromatic patch (HP:0009727)
rhabdomyoma cardiac = cardiac rhabdomyoma (HP:0009729)
sclerotic bone lesions = sclerotic bone lesions
Shagreen patch = Shagreen patch (HP:0009721)
skin lesions = 'confetti' skin lesions (HP:0007449)
spasm = infantile spasms (HP:0012469)
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Seizures
: does individual have seizures (please specify)
All options:
no = no seizures (-HP:0001250)
seizures = seizures (HP:0001250)
absence = absence seizures (HP:0002121)
absence atypical = atypical absence seizures (HP:0007270)
absence with eyelid myoclonia = absence seizures with eyelid myoclonia (HP:0011149)
absence with special features = absence seizures with special features (HP:0011148)
atonic (drop/astatic/hypotonic) = atonic seizures (drop, astatic, hypotonic) (HP:0010819)
bilateral convulsive = bilateral convulsive seizures (HP:0007334)
complex febrile = complex febrile seizures (HP:0011172)
dacrystic = dacrystic seizures (HP:0010820)
developmental stagnation = developmental stagnation at onset of seizures (HP:0006834)
dialeptic = dialeptic seizures (HP:0011146)
early onset absence = early onset absence seizures (HP:0011152)
EEG = abnormal EEG (HP:0002353)
febrile = febrile seizures (HP:0002373)
focal = focal seizures (HP:0007359)
focal afebrile = seizures, focal (partial), afebrile (HP:0040168)
focal autonomic = focal autonomic seizures (HP:0011154)
focal autonomic altered responsiveness = focal autonomic seizures with altered responsiveness (HP:0011155)
focal autonomic no altered responsiveness = focal autonomic seizures without altered responsiveness (HP:0011156)
focal clonic = focal clonic seizures (HP:0002266)
focal complex = complex focal seizures with impairment of consciousness or awareness (HP:0002384)
focal motor = focal motor seizures (HP:0011153)
focal myoclonic = focal myoclonic seizures (HP:0011166)
focal simple = focal seizures without impairment of consciousness or awareness (HP:0002349)
focal tonic = focal tonic seizures (HP:0011167)
gelastic = gelastic seizures (HP:0010821)
generalized = generalized seizures (HP:0002197)
generalized clonic = generalized clonic seizures (HP:0011169)
generalized myoclonic = generalized myoclonic seizures (HP:0002123)
generalized recurrent = generalized seizures, recurrent (HP:0002197)
generalized tonic = generalized tonic seizures (HP:0010818)
generalized tonic-clonic = seizures, generalized, tonic-clonic (HP:0002069)
generalized tonic-clonic photosensitive = seizures, tonic-clonic, photosensitive (HP:0007207)
generalized tonic-clonic awakening = generalized tonic-clonic seizures on awakening (HP:0007193)
hemiclonic (unilateral clonic) = hemiclonic seizures (unilateral clonic) (HP:0006813)
hemifacial = hemifacial seizures (HP:0007332)
hyperkinetic = hyperkinetic seizures (HP:0011174)
hypocalcemic = hypocalcemic seizures (HP:0002199)
hypoglycemic = hypoglycemic seizures (HP:0002173)
hypokinetic = hypokinetic seizures (HP:0011173)
maternal = maternal seizures (HP:0100622)
multifocal = multifocal seizures (HP:0031165)
myoclonic atonic = myoclonic atonic seizures (HP:0011170)
petit mal = petit mal seizures (HP:0011147)
photomyoclonic = photomyoclonic seizures (HP:0001327)
salaam = salaam seizures (HP:0011097)
simple febrile = simple febrile seizures (HP:0011171)
simple partial occipital = simple partial occipital seizures (HP:0011165)
symptomatic = symptomatic seizures (HP:0011145)
versive = versive seizures (HP:0011175)
? = unknown
n/a = not analysed
Intellectual_dis
: individual has intellectual disability (intellectual disability (mental retardation), HP:0001249,mental retardation); please specify
All options:
yes = intellectual disability (HP:0001249, IQ below 70)
borderline = intellectual disability, borderline (HP:0006889, IQ 70-79)
mild = intellectual disability, mild (HP:0001256, IQ 50-69)
moderate = intellectual disability, moderate (HP:0002342, IQ 35-49)
profound = intellectual disability, profound (HP:0002187, IQ below 20)
severe = intellectual disability, severe (HP:0010864, IQ 20-34)
progressive = intellectual disability, progressive (HP:0006887)
no = no intellectual disability (IQ above 79, -)
? = unknown
n/a = not analysed
Protein
: result from protein staining
Cognitive/Impairment
: does the individual have cognitive impairment (HPO_0100543)
All options:
normal (IQ >80)
- = absent (normal)
+ = present
undefined = IQ <80
borderline = IQ 70-80
normal-mild
mild = IQ 50-70
mild-moderate
moderate
moderate-severe = IQ <50
severe
? = unknown
n/a = not analysed
Hypertension
: individual has hypertension (please specify)
All options:
episodic = episodic hypertension (HP:0000875)
extrahepatic = extrahepatic portal hypertension (HP:0004941)
hypertension = hypertension (HP:0000822)
maternal = maternal hypertension (HP:0008071)
pheochromocytoma = pheochromocytoma ass. hypertension (HP:0002640)
portal = portal hypertension (HP:0001409)
pulmonary = pulmonary hypertension (HP:0002092)
renovascular = renovascular hypertension (HP:0100817)
no = no hypertension
? = unknown
n/a = not applicable
Development
: individual has developmental (psychomotor) delay; please specify (global, cognitive, language/speech, mental, motor, social/emotional)
All options:
global = global developmental delay (+, HP:0001263)
global mild = mild global developmental delay (HP:0011342)
global moderate = moderate global developmental delay (HP:0011343)
global profound = profound global developmental delay (HP:0012736)
global severe = severe global developmental delay (HP:0011344)
motor = motor delay (HP:0001270)
no motor = no motor delay (HP:0001270)
motor fine = delay fine motor development (HP:0010862)
motor gross = delay gross motor development (HP:0002194)
neurodevelopmental = neurodevelopmental delay (HP:0012758)
regression = developmental regression (HP:0002376)
stagnation = developmental stagnation (HP:0007281)
stagnation seizures = developmental stagnation at onset seizures (HP:0006834)
social = delayed social development (HP:0012434)
speech/language = delayed speech/language development (HP:0000750)
no = no developmental delay (-)
? = unknown
n/a = not analysed
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
7 entries on 1 page. Showing entries 1 - 7.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Phenotype ID
Diagnosis/Initial
TSC/Features
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Seizures
Intellectual_dis
Protein
Cognitive/Impairment
Hypertension
Development
Owner
Individual ID
0000201784
definite tuberous sclerosis
-
TSC-1
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
-
Lang He
00263428
0000201785
definite tuberous sclerosis
-
TSC-1
-
Familial
-
-
-
-
-
-
-
-
-
-
Lang He
00263429
0000201788
definite tuberous sclerosis
-
TSC-1
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
-
Lang He
00263432
0000232726
Tuberous sclerosis
rhabdomyoma cardiac
TSC-1
-
Familial, autosomal dominant
03y
03y
-
HP:0009729
no
no
-
normal (IQ >80)
-
no
Yohei Masunaga
00306899
0000232731
Tuberous sclerosis
rhabdomyoma cardiac
TSC-1
-
Familial, autosomal dominant
00y
00y
00y
-
no
?
-
?
-
no
Yohei Masunaga
00306904
0000278411
Epilepsy with complex partial seizures
dysplasias cortical;epilepsy;nodules;Shagreen patch
-
-
Familial, autosomal dominant
-
-
-
-
-
-
-
-
-
-
Andreas Laner
00384621
0000299903
-
epilepsy
-
Seizure, Focal-onset seizure, Abnormal nervous system physiology, Cerebral hemorrhage, Intracranial hemorrhage
Isolated (sporadic)
03y
-
-
-
seizures;focal
-
-
?
-
?
Andreas Laner
00407773
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators