Global Variome shared LOVD
ARMC5 (armadillo repeat containing 5)
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Phenotypes for disease #00267 (BROVCA1 (cancer, breast-ovarian, familial, susceptibility to, type 1 (BROVCA-1)), OMIM:604370)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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41 entries on 1 page. Showing entries 1 - 41.
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Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000050201
-
-
-
Unknown
-
-
-
-
-
Naomi Bowers
00063270
0000050202
-
-
-
Unknown
-
-
-
-
-
Naomi Bowers
00063271
0000050203
-
-
-
Unknown
-
-
-
-
-
Naomi Bowers
00063272
0000054263
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Pinar Tulay
00074444
0000054264
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Pinar Tulay
00074438
0000054265
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Pinar Tulay
00074441
0000054266
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Pinar Tulay
00074445
0000058375
no data
-
-
Unknown
37y
-
-
-
-
Roxana Cerretini
00078607
0000058376
no data
-
-
Unknown
-
-
-
-
-
Roxana Cerretini
00078608
0000058377
no data
-
-
Unknown
-
-
-
-
-
Roxana Cerretini
00078609
0000058413
infiltrating ductal carcinoma
-
-
Unknown
41y
29y
-
-
-
Roxana Cerretini
00078645
0000058414
no data
-
-
Unknown
-
-
-
-
-
Roxana Cerretini
00078646
0000058416
no data
-
-
Unknown
-
-
-
-
-
Roxana Cerretini
00078648
0000058417
no data
-
-
Unknown
-
-
-
-
-
Roxana Cerretini
00078649
0000058432
healthy
-
-
Unknown
31y
-
-
-
-
Roxana Cerretini
00078664
0000058433
infiltrating ductal carcinoma
-
-
Unknown
51y
44y
-
-
-
Roxana Cerretini
00078665
0000058434
infiltrating ductal carcinoma
-
-
Unknown
66y
64y
-
-
-
Roxana Cerretini
00078666
0000078882
BC (bilateral), OC. In total 6 cases of BC in family
-
-
Familial
-
48
-
-
-
Andreas Laner
00100657
0000082782
Mamma-Carcinom rezeptor-positive
-
-
Familial, autosomal dominant
49y
48y
-
-
-
Friederike Hein
00104891
0000082962
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105062
0000082963
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105063
0000082964
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105064
0000082965
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105065
0000082966
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105066
0000082967
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105067
0000082968
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105068
0000082969
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105069
0000082970
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105070
0000082971
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Kathleen Claes
00105071
0000093191
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Gemeinschaftspraxis für Humangenetik Dresden
00117459
0000129835
Early-onset breast cancer, without any affected family member
Breast Cancer
Breast Cancer
Isolated (sporadic)
-
-
-
40
-
Cengiz Yakicier
00164820
0000143391
-
Carcinoma Breast
Carcinoma Breast
Unknown
>41y
>41y
-
-
-
Rajiv Gandhi CIRC
00181223
0000144234
HP:0100615
carcinoma- ovary
High grade serous carcinoma- ovary
Familial, autosomal dominant
54y
54y
54y
54y
-
Rajiv Gandhi CIRC
00183529
0000220025
HP:0003002
-
-
Familial, autosomal dominant
-
28y
-
-
-
Mohcine Bennani
00286160
0000220035
HP: 0003002
Breast cancer
-
Familial, autosomal dominant
-
34y
-
-
-
Mohcine Bennani
00286176
0000220037
HP: 0003002
-
-
Familial, autosomal dominant
-
31y
-
-
-
Mohcine Bennani
00286178
0000245277
Individual not affected at age 28y; German S3 indication criteria met, mother breast cancer at 44 yrs, sister of grandmother ms breast cancer 40 - 50 yrs, great grandmother ms cancer.
-
-
Unknown
28y
-
-
-
-
Andreas Laner
00326815
0000254797
-
-
-
Unknown
-
-
-
-
-
Gemeinschaftspraxis für Humangenetik Dresden
00359546
0000272850
German S3 indication criteria fulfilled, inflammatory breast carcinoma at 63 y. and endometrial carcinoma, OGD: HP positive (not eradicated), brother stomach cancer at 56 y., another brother stomach cancer at 67 y., uncle ms stomach carcinoma, aunt ms colon carcinoma at approx. 60 y., grandmother ms spinal cord cancer, father liver cancer at 60 y., cousin vs breast carcinoma at 45 y.
-
-
Familial, autosomal dominant
69y
-
-
-
-
Andreas Laner
00377699
0000276002
Family history of cancer, Breast carcinoma
Breast carcinoma
-
Familial
-
71y
-
-
-
Andreas Laner
00382167
0000278410
Breast carcinoma
Breast carcinoma
-
Familial, autosomal dominant
51y
-
-
-
-
Andreas Laner
00384620
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