Global Variome shared LOVD
NAA20 (N(alpha)-acetyltransferase 20, NatB catalyti...)
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Phenotypes for disease #00341 (PJS (Peutz-Jeghers syndrome (PJS)), OMIM:175200)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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29 entries on 1 page. Showing entries 1 - 29.
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Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000014900
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016109
0000014901
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016110
0000014902
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016111
0000014903
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016122
0000014904
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016112
0000014905
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016113
0000014906
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016114
0000014907
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016115
0000014908
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016116
0000014909
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016117
0000014910
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016118
0000014911
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016119
0000014912
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016120
0000014913
-
-
-
Unknown
-
-
-
-
-
Zhiqing Wang
00016121
0000079163
-
-
-
Unknown
-
-
-
-
-
Gemeinschaftspraxis für Humangenetik Dresden
00100944
0000144259
Peutz-Jeghers
-
-
Unknown
-
-
-
-
-
Stephanie Baert-Desurmont
00183555
0000144260
Peutz-Jeghers
-
-
Unknown
-
-
-
-
-
Stephanie Baert-Desurmont
00183556
0000144261
Peutz-Jeghers
-
-
Unknown
-
-
-
-
-
Stephanie Baert-Desurmont
00183557
0000144262
Peutz-Jeghers
-
-
Unknown
-
-
-
-
-
Stephanie Baert-Desurmont
00183558
0000144315
-
-
-
Familial
-
-
-
-
-
Rajiv Sarin, PhD
00183647
0000144316
Family history of breast cancer in mother. Proband has mucocutaneous pigmentation and GI polyps
-
-
Familial
-
-
-
-
-
Rajiv Sarin, PhD
00183648
0000144317
small bowel cancer with polyposis and mucocutaneous pigmentation. Son of proband also has pigmentation and is carrier of the mutation
-
-
Unknown
-
-
-
-
-
Rajiv Sarin, PhD
00183649
0000144318
-
-
-
Unknown
-
-
-
-
-
Rajiv Sarin, PhD
00183650
0000144319
gonadoblastoma of ovary with multiple hamartomatous polyposis
-
-
Unknown
-
-
-
-
-
Rajiv Sarin, PhD
00183651
0000144320
hyperpigmentation, infiltrating ductal carcinoma of breast Grade III with ER/PR/Her2 +/+/-
Peutz-Jeghers syndrome
-
Unknown
-
-
-
-
-
Rajiv Sarin, PhD
00183652
0000144321
hyperpigmentation, infiltrating ductal carcinoma of breast Grade III with ER/PR/Her2 +/+/-
Peutz-Jeghers syndrome
-
Unknown
-
-
-
-
-
Rajiv Sarin, PhD
00183653
0000223047
Hamartomatous polyposis (HP:0004390), adenocarcinoma of the large intestine (HP:0040275)
Peutz-Jeghers syndrome
-
Unknown
-
60y
-
-
-
Thorkild Terkelsen
00289435
0000286393
Abnormality of skin pigmentation, Abnormal pigmentation of the oral mucosa
Peutz-Jeghers syndrome
Peutz-Jeghers syndrome
Familial, autosomal dominant
-
-
-
-
-
Andreas Laner
00393152
0000308165
Hamartomatous polyposis, Intestinal obstruction, Abnormal stomach morphology, Colorectal polyposis, Hepatic cysts
-
-
Unknown
-
-
-
-
-
Andreas Laner
00416445
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