Global Variome shared LOVD
TMEM173 (transmembrane protein 173)
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Global Variome, with Curator vacancy
View all genes
View TMEM173 gene homepage
View graphs about the TMEM173 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene TMEM173
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene TMEM173
View all variants in gene TMEM173
Full data view for gene TMEM173
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene TMEM173
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene TMEM173
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene TMEM173
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Phenotypes for disease #00449 (MLDB (leukodystrophy, metachromatic, due to saposin-B deficiency), OMIM:249900)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
31 entries on 1 page. Showing entries 1 - 31.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000016226
-
-
-
Isolated (sporadic)
-
-
-
-
-
Johan den Dunnen
00017867
0000027611
see paper
-
-
Isolated (sporadic)
-
-
-
-
-
Johan den Dunnen
00034215
0000029099
juvenile form
-
-
Familial, autosomal recessive
05y
-
04y06m
-
-
Mirella Filocamo
00038645
0000029107
juvenile form
-
-
Familial, autosomal recessive
-
-
06y
-
-
Mirella Filocamo
00038713
0000029108
juvenile form
-
-
Familial, autosomal recessive
07y
-
07y
-
-
Mirella Filocamo
00038714
0000029109
adult form
-
-
Familial, autosomal recessive
-
-
20y
-
-
Mirella Filocamo
00038715
0000029110
late infantile form
-
-
Familial, autosomal recessive
-
-
02y
-
-
Mirella Filocamo
00038716
0000029111
late infantile form
-
-
Familial, autosomal recessive
-
-
02y
-
-
Mirella Filocamo
00038717
0000029112
late infantile form
-
-
Familial, autosomal recessive
-
-
02y
-
-
Mirella Filocamo
00038718
0000029113
Late infantile form
-
-
Familial, autosomal recessive
02y06m
-
01y08m
-
-
Mirella Filocamo
00038725
0000029114
juvenile form
-
-
Familial, autosomal recessive
02y01m
-
02y
-
-
Mirella Filocamo
00038726
0000029115
late infantile form
-
-
Familial, autosomal recessive
00y09m
-
00y07m
-
-
Mirella Filocamo
00038727
0000029117
late infantile form
-
-
Familial, autosomal recessive
-
-
00y12m
-
-
Mirella Filocamo
00038728
0000029123
see paper, extensive description
-
-
Isolated (sporadic)
-
-
-
-
-
Johan den Dunnen
00038735
0000029139
late infantile form
-
-
Familial, autosomal recessive
-
-
02y06m
-
-
Mirella Filocamo
00038785
0000029140
late infantile form
-
-
Familial, autosomal recessive
-
-
02y03m
-
-
Mirella Filocamo
00038786
0000029141
late infantile form
-
-
Familial, autosomal recessive
-
-
02y04m
-
-
Mirella Filocamo
00038787
0000029142
juvenile form
-
-
Familial, autosomal recessive
-
-
04y
-
-
Mirella Filocamo
00038788
0000029143
juvenile form
-
-
Familial, autosomal recessive
-
-
04y
-
-
Mirella Filocamo
00038789
0000029144
late infantile form
-
-
Familial, autosomal recessive
-
-
01y06m
-
-
Mirella Filocamo
00038790
0000029145
late infantile form
-
-
Familial, autosomal recessive
-
-
01y03m
-
-
Mirella Filocamo
00038791
0000029146
pre-symptomatic
-
-
Familial, autosomal recessive
-
-
-
-
-
Mirella Filocamo
00038792
0000029150
late infantile form
-
-
Familial, autosomal recessive
-
-
03y
-
-
Mirella Filocamo
00038802
0000029151
late infantile form
-
-
Familial, autosomal recessive
-
-
03y
-
-
Mirella Filocamo
00038803
0000029152
pre-symptomatic
-
-
Familial, autosomal recessive
-
-
-
-
-
Mirella Filocamo
00038804
0000029153
late infantile form
-
-
Familial, autosomal recessive
-
-
01y08m
-
-
Mirella Filocamo
00038805
0000029154
late infantile form
-
-
Familial, autosomal recessive
-
-
01y06m
-
-
Mirella Filocamo
00038806
0000029155
late infantile form
-
-
Familial, autosomal recessive
-
-
00y05m
-
-
Mirella Filocamo
00038807
0000029156
late infantile form
-
-
Familial, autosomal recessive
-
-
03y08m
-
-
Mirella Filocamo
00038808
0000138588
-
-
-
Familial, autosomal recessive
-
04y
01y10m
-
-
Martina Skopkova
00173735
0000272249
-
-
-
Familial, autosomal dominant
02y05m
02y05m
01y10m
-
-
Shuyuan Yan
00377058
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators