Global Variome shared LOVD
COL2A1 (collagen, type II, alpha 1)
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Curators:
Mouna Barat-Houari
and
Isabelle Touitou
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Phenotypes for disease #00689 (SEDC (dysplasia, spondyloepiphyseal, congenita (SEDC)), OMIM:183900)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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139 entries on 2 pages. Showing entries 1 - 100.
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Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000020396
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00024278
0000020418
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024300
0000020419
-
-
-
Familial
-
-
-
-
-
Johan den Dunnen
00024301
0000020421
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024303
0000020433
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024315
0000020434
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024316
0000020439
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024321
0000020442
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024324
0000020443
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024325
0000020444
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024326
0000020496
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024378
0000020497
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024379
0000020513
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024395
0000020519
SEDC-S
-
-
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00024401
0000020520
SEDC-M
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024402
0000020522
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024404
0000020523
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024405
0000020524
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024406
0000020525
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024407
0000020526
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024408
0000020527
SEDC-M
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024409
0000020528
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024410
0000020529
SEDC-M like
-
-
Familial
-
-
-
-
-
Johan den Dunnen
00024411
0000020530
SEDC-M like
-
-
Familial
-
-
-
-
-
Johan den Dunnen
00024412
0000020541
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024423
0000020567
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024449
0000020568
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024450
0000020569
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024451
0000020570
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024452
0000020625
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024507
0000020627
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024509
0000020652
-
-
-
Unknown
13y
-
13y
-
-
Isabelle Touitou
00024534
0000020657
-
-
-
Unknown
2y6m
-
1m
-
-
Isabelle Touitou
00024539
0000020658
-
-
-
Unknown
13y
-
7y
-
-
Isabelle Touitou
00024540
0000020659
-
-
-
Unknown
13y
-
7y
-
-
Isabelle Touitou
00024541
0000020661
-
-
-
Unknown
4y
-
-
-
-
Isabelle Touitou
00024543
0000020662
-
-
-
Unknown
35y
-
-
-
-
Isabelle Touitou
00024544
0000020672
-
-
-
Unknown
46y
-
-
-
-
Isabelle Touitou
00024554
0000020674
-
-
-
Unknown
39y
-
-
-
-
Isabelle Touitou
00024556
0000020677
-
-
-
Unknown
1y3m
-
-
-
-
Isabelle Touitou
00024559
0000020678
-
-
-
Unknown
41y
-
-
-
-
Isabelle Touitou
00024560
0000020679
-
-
-
Unknown
51y
-
3y
-
-
Isabelle Touitou
00024561
0000020682
-
-
-
Unknown
25y
-
-
-
-
Isabelle Touitou
00024564
0000020683
-
-
-
Unknown
2y
-
6m
-
-
Isabelle Touitou
00024565
0000020813
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024695
0000020826
-
-
-
Isolated (sporadic)
18m
-
-
-
-
Isabelle Touitou
00024708
0000020827
-
-
-
Isolated (sporadic)
5y
-
-
-
-
Isabelle Touitou
00024709
0000020828
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00024710
0000020878
-
-
-
Familial, autosomal dominant
7y
-
-
-
-
Isabelle Touitou
00024760
0000020879
-
-
-
Familial, autosomal dominant
33y
-
-
-
-
Isabelle Touitou
00024761
0000020880
-
-
-
Familial, autosomal dominant
5y
-
-
-
-
Isabelle Touitou
00024762
0000020881
-
-
-
Familial, autosomal dominant
31y
-
-
-
-
Isabelle Touitou
00024763
0000020882
-
-
-
Familial, autosomal dominant
58y
-
-
-
-
Isabelle Touitou
00024764
0000020883
-
-
-
Familial, autosomal dominant
3y
-
-
-
-
Isabelle Touitou
00024765
0000020884
-
-
-
Familial, autosomal dominant
32y
-
-
-
-
Isabelle Touitou
00024766
0000020885
-
-
-
Familial, autosomal dominant
6y
-
-
-
-
Isabelle Touitou
00024767
0000020886
-
-
-
Familial, autosomal dominant
32y
-
-
-
-
Isabelle Touitou
00024768
0000020892
-
-
-
Familial
0d
-
-
-
-
Isabelle Touitou
00024774
0000020903
-
-
-
Unknown
?
-
?
-
-
Isabelle Touitou
00024785
0000020914
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024796
0000020915
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024797
0000020917
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024799
0000020922
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024804
0000020925
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024807
0000020927
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024809
0000020947
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024829
0000020955
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024837
0000020957
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024839
0000020958
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024840
0000020962
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024844
0000020964
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024846
0000020970
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024852
0000020971
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024853
0000020976
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024858
0000020981
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024863
0000020983
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024865
0000020984
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024866
0000020988
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024870
0000020991
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024873
0000020999
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024881
0000021001
-
-
-
Unknown
-
-
-
-
-
Isabelle Touitou
00024883
0000021024
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024906
0000021025
SEDC-M
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024907
0000021027
SEDC-M
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024909
0000021028
SEDC-M
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024910
0000021029
SEDC-M
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024911
0000021031
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024913
0000021032
-
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024914
0000021033
SEDC-S
-
-
Unknown
-
-
-
-
-
Johan den Dunnen
00024915
0000028949
-
-
-
Familial, autosomal dominant
26y
-
-
-
-
Isabelle Touitou
00038422
0000028952
18WG
-
-
Familial, autosomal dominant
-
-
<0d
-
-
Isabelle Touitou
00038425
0000028962
-
-
-
Isolated (sporadic)
-
-
-
-
-
Isabelle Touitou
00038435
0000028968
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038441
0000028969
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038442
0000028970
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038443
0000028971
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038444
0000028972
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038445
0000028981
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038454
0000028982
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038455
0000028983
-
-
-
Familial
-
-
-
-
-
Isabelle Touitou
00038456
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