Global Variome shared LOVD
TXNRD2 (thioredoxin reductase 2)
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Global Variome, with Curator vacancy
View all genes
View TXNRD2 gene homepage
View graphs about the TXNRD2 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene TXNRD2
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene TXNRD2
View all variants in gene TXNRD2
Full data view for gene TXNRD2
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene TXNRD2
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene TXNRD2
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene TXNRD2
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Phenotypes for disease #00752 (ICF1 (immunodeficiency-centromeric instability-facial anomalies syndrome, type 1 (ICF-1)), OMIM:242860)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Birth/Weight
: weight at birth (in kg, with SD)
Infections
: does the patient have (recurrent) infections; please specify (tissue, agent, etc.)
All options:
yes = (recurrent) infections (HP:0002719, +)
no = no (recurrent) infections (-)
recurrent due to aspiration (HP:0004891)
recurrent in infancy/early childhood (HP:0005437)
bronchopulmonaryrecurrent (HP:0006538)
CNS (HP:0011450)
cutaneous fungal recurrent (HP:0011370)
gastrointestinal tract recurrent (HP:0004798)
nail monilial chronic (HP:0008396)
pneunomia recurrent (HP:0006532)
respiratory recurrent (HP:0002205)
respiratory tract (HP:0011947)
respiratory tract acute (HP:0011948)
respiratory tract upper and lower recurrent (HP:0200117)
respiratory tract lower recurrent (HP:0002783)
respiratory tract upper recurrent (HP:0002788)
sinopulmonary recurrent (HP:0005425)
skin recurrent (HP:0001581)
skin bacterial recurrent (HP:0005406)
skin viral recurrent (HP:0011371)
urinary tract recurrent (HP:0000010)
vulvovaginal candidiasis recurrent (HP:0012204)
recurrent Aspergillus (HP:0002724)
recurrent bacterial (HP:0002718)
recurrent bacterial gram-negative (HP:0005420)
recurrent Burkholderia cepacia (HP:0002842)
recurrent candida (HP:0005401)
recurrent E. coli (HP:0002740)
recurrent enteroviral (HP:0002743)
recurrent fungal (HP:0002841)
recurrent Haemophilus influenzae (HP:0005376)
Heliobacter pylori (HP:0005202)
recurrent Klebsiella (HP:0002742)
recurrent meningococcal disease (HP:0005381)
recurrent mycobacterial (HP:0011274)
recurrent mycobacterium avium complex (HP:0011275)
recurrent Neisserial (HP:0005430)
recurrent opportunistic infections (HP:0005390)
recurrent protozoan infections (HP:0005386)
recurrent Serratia marcescens (HP:0002741)
recurrent Staphylococcal (HP:0007499)
recurrent Staphylococcus aureus (HP:0002726)
recurrent Streptococcus pneumoniae (HP:0005366)
recurrent systemic pyogenic (HP:0005429)
recurrent viral (HP:0004429)
recurrent viral severe (HP:0005364)
? = unknown
n/a = not analysed
Protein
: result from protein staining
Development
: individual has developmental (psychomotor) delay; please specify (global, cognitive, language/speech, mental, motor, social/emotional)
All options:
global = global developmental delay (+, HP:0001263)
global mild = mild global developmental delay (HP:0011342)
global moderate = moderate global developmental delay (HP:0011343)
global profound = profound global developmental delay (HP:0012736)
global severe = severe global developmental delay (HP:0011344)
motor = motor delay (HP:0001270)
no motor = no motor delay (HP:0001270)
motor fine = delay fine motor development (HP:0010862)
motor gross = delay gross motor development (HP:0002194)
neurodevelopmental = neurodevelopmental delay (HP:0012758)
regression = developmental regression (HP:0002376)
stagnation = developmental stagnation (HP:0007281)
stagnation seizures = developmental stagnation at onset seizures (HP:0006834)
social = delayed social development (HP:0012434)
speech/language = delayed speech/language development (HP:0000750)
no = no developmental delay (-)
? = unknown
n/a = not analysed
Intellectual_dis
: individual has intellectual disability (intellectual disability (mental retardation), HP:0001249,mental retardation); please specify
All options:
yes = intellectual disability (HP:0001249, IQ below 70)
borderline = intellectual disability, borderline (HP:0006889, IQ 70-79)
mild = intellectual disability, mild (HP:0001256, IQ 50-69)
moderate = intellectual disability, moderate (HP:0002342, IQ 35-49)
profound = intellectual disability, profound (HP:0002187, IQ below 20)
severe = intellectual disability, severe (HP:0010864, IQ 20-34)
progressive = intellectual disability, progressive (HP:0006887)
no = no intellectual disability (IQ above 79, -)
? = unknown
n/a = not analysed
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
25 entries on 1 page. Showing entries 1 - 25.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Birth/Weight
Infections
Protein
Development
Intellectual_dis
Owner
Individual ID
0000029069
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038674
0000029070
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038675
0000029071
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038676
0000029073
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038678
0000029074
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038679
0000029075
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038680
0000029076
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038681
0000029077
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038682
0000029078
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038683
0000029079
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038684
0000029080
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038685
0000029081
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038686
0000029082
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038687
0000029083
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038688
0000029084
-
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038689
0000029085
-
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038690
0000029086
-
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038691
0000029087
-
-
-
Isolated (sporadic)
-
-
-
-
-
-
-
-
-
Johan den Dunnen
00038692
0000078570
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100247
0000078571
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100248
0000078572
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100246
0000078573
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100249
0000078574
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100250
0000078575
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100251
0000078576
see paper; ...
-
-
Familial, autosomal recessive
-
-
-
-
-
-
-
-
-
Marlinde L. van den Boogaard
00100252
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators