Global Variome shared LOVD
DSC2 (desmocollin 2)
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Curator:
Paul van der Zwaag
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Phenotypes for disease #01169 (ATS3A (Alport syndrome, type 3A, autosomal dominant), OMIM:104200)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
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Matches
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Arg
all entries containing 'Arg'
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Arg Ser
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Text
Arg|Ser
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!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
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Text
="p.0"
all entries exactly matching 'p.0'
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!=""
Text
!="p.0"
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combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
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all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
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all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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53 entries on 1 page. Showing entries 1 - 53.
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Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000030476
Not Rett synd. - Alcoholism
-
-
Unknown
-
-
-
-
-
RettBASE
00040193
0000030477
Not Rett synd. - Alcoholism
-
-
Unknown
-
-
-
-
-
RettBASE
00040194
0000030526
Not Rett synd. - Alcoholism
-
-
Unknown
-
-
-
-
-
RettBASE
00040243
0000033881
Not Rett synd. - Alcoholism
-
-
Unknown
-
-
-
-
-
RettBASE
00043598
0000033882
Not Rett synd. - Alcoholism
-
-
Unknown
-
-
-
-
-
RettBASE
00043599
0000069749
Micro-haematuria, proteinuria.; no hearing loss; no ocular phenotype;
-
-
Unknown
-
-
-
-
-
Judy Savige
00091302
0000069795
Micro-haematuria, proteinuria; 35y renal failure; hearing loss; renal failure;
-
-
Unknown
-
-
-
-
-
Judy Savige
00091348
0000069843
Micro-haematuria, proteinuria. CRF.; hearing loss; glomerulus abnormal;
-
-
Unknown
-
-
-
-
-
Judy Savige
00091396
0000069857
Micro-haematuria, proteinuria, normal renal function; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091410
0000069863
45y renal failure; no hearing loss; no ocular phenotype; renal failure; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091416
0000070168
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00091968
0000070181
Micro-haematuria proteinuria, non-progressive CRF; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091924
0000070185
Micro-haematuria ,proteinuria renal failure. ; renal failure
-
-
Unknown
-
-
-
-
-
Judy Savige
00091921
0000070186
Micro-haematuria. (family has hyperchol-esterolemia); 29y renal failure; hearing loss; no ocular phenotype; renal failure, lomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091939
0000070195
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00091975
0000070202
Micro/Macro-haematuria, proteinuria. ; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091940
0000070203
Micro-haematuria, proteinuria.; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091933
0000070209
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00091983
0000070220
Micro-haehoturia/Proteinuria. ; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091917
0000070222
micro-haematuria
-
-
Unknown
-
-
-
-
-
Judy Savige
00091920
0000070230
Micro-haematuria, proteinuria. ; 60y renal failure; renal failure
-
-
Unknown
-
-
-
-
-
Judy Savige
00091932
0000070232
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00091991
0000070251
Micro-haematuria. ; no hearing loss; no ocular phenotype; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091938
0000070269
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092003
0000070278
Microhaematuria, proteinuria. ; 60y renal failure; renal failure
-
-
Unknown
-
-
-
-
-
Judy Savige
00091943
0000070279
Microhaematuria, proteinuria. ; 45y renal failure; ocular changes; renal failure, lomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091942
0000070287
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092009
0000070292
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092012
0000070298
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092014
0000070301
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092016
0000070307
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092020
0000070318
Micro-haehoturia/Proteinuria. ; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091918
0000070321
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092027
0000070331
Micro-haematuria, macro-haematuria, bilateral hypoacusis, normal renal function. ; hearing loss; glomerulus abnormal
-
-
Unknown
-
-
-
-
-
Judy Savige
00091928
0000070337
-
-
-
Unknown
-
-
-
-
-
Judy Savige
00092037
0000126375
hearing loss (HP:0000365); no ocular changes; hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
48y
-
-
-
-
Judy Savige
00153698
0000126467
GBM pathology thinning, splitting, lamellation; 42y-renal failure (HP:0000083); hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
50y
-
-
-
-
Judy Savige
00153790
0000126503
41y-hearing loss (HP:0000365); ocular changes; 31y-renal failure (HP:0000083), 42y-retinopathy; hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
52y
-
24y
-
-
Judy Savige
00153826
0000126524
no hearing loss (-HP:0000365); no ocular changes; hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
55y
-
-
-
-
Judy Savige
00153847
0000126543
GBM pathology thinning, lamellation; 58y-renal failure (HP:0000083); hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
61y
-
-
-
-
Judy Savige
00153866
0000126621
no hearing loss (-HP:0000365); no ocular changes; GBM pathology Irregularly thickened and splitting; hematuria (HP:0000790); no proteinuria (-HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
32y
-
-
-
-
Judy Savige
00153944
0000126622
no hearing loss (-HP:0000365); no ocular changes; GBM pathology Irregularly thickened and splitting; hematuria (HP:0000790); no proteinuria (-HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
32y
-
31y
-
-
Judy Savige
00153945
0000126640
hearing loss (HP:0000365); GBM pathology Irregular thickening, thinning and splitting; hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
21y
-
-
-
-
Judy Savige
00153963
0000126644
hearing loss (HP:0000365); ocular changes; hematuria (HP:0000790); proteinuria (HP:0000093)
Alport syndrome
syndrome, Alport, autosomal dominant (ASAD)
Familial, autosomal dominant
49y
-
-
-
-
Judy Savige
00153967
0000127064
hematuria (HP:0000790)
Alport syndrome
-
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00153845
0000295738
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402991
0000295739
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402992
0000295741
-
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402994
0000295743
HP:0000006
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402996
0000295744
HP:0000006
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402997
0000295745
HP:0000006
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402998
0000295746
HP:0000006
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00402999
0000295759
HP:0000006
-
-
Familial, autosomal dominant
-
-
-
-
-
Jasmina Comic
00403012
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