Phenotypes for disease #01647 (LCA2 (Leber congenital amaurosis, type 2 (LCA-2)), OMIM:204100)

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Phenotype details: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)

Diagnosis/Initial: initial diagnosis, before molecular testing

Diagnosis/Definite: phenotype individual after molecular testing (OMIM abbreviation)

Inheritance: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:

Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable

Age/Examination: age at which the individual was examined.

35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown

Age/Diagnosis: age diagnosis was confirmed

35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown

Age/Onset: Age first symptoms disease appeared in individual:

35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown

Phenotype/Onset: individual's phenotype at Age/Onset described using HPO

Protein: result from protein staining

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Operator	Column type	Example	Matches
	Text	Arg	all entries containing 'Arg'
space	Text	Arg Ser	all entries containing 'Arg' and 'Ser'
\|	Text	Arg\|Ser	all entries containing 'Arg' or 'Ser'
!	Text	!fs	all entries not containing 'fs'
^	Text	^p.(Arg	all entries beginning with 'p.(Arg'
$	Text	Ser)$	all entries ending with 'Ser)'
=""	Text	=""	all entries with this field empty
=""	Text	="p.0"	all entries exactly matching 'p.0'
!=""	Text	!=""	all entries with this field not empty
!=""	Text	!="p.0"	all entries not exactly matching 'p.0?'
combination	Text	*\|Ter !fs	all entries containing '*' or 'Ter' but not containing 'fs'
	Date	2020	all entries matching the year 2020
\|	Date	2020-03\|2020-04	all entries matching March or April, 2020
!	Date	!2020-03	all entries not matching March, 2020
<	Date	<2020	all entries before the year 2020
<=	Date	<=2020-06	all entries in or before June, 2020
>	Date	>2020-06	all entries after June, 2020
>=	Date	>=2020-06-15	all entries on or after June 15th, 2020
combination	Date	2019\|2020 <2020-03	all entries in 2019 or 2020, and before March, 2020
	Numeric	23	all entries exactly matching 23
\|	Numeric	23\|24	all entries exactly matching 23 or 24
!	Numeric	!23	all entries not exactly matching 23
<	Numeric	<23	all entries lower than 23
<=	Numeric	<=23	all entries lower than, or equal to, 23
>	Numeric	>23	all entries higher than 23
>=	Numeric	>=23	all entries higher than, or equal to, 23
combination	Numeric	>=20 <30 !23	all entries with values from 20 to 29, but not equal to 23

Some more advanced examples:

Example	Matches
Asian	all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian	all entries containing 'Asian' but not containing 'Caucasian'
Asian\|African !Caucasian	all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"	all entries containing 'South Asian', but not containing 'South East Asian'

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29 entries on 1 page. Showing entries 1 - 29.

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Phenotype ID	Phenotype details	Diagnosis/Initial	Diagnosis/Definite	Inheritance	Age/Examination	Age/Diagnosis	Age/Onset	Phenotype/Onset	Protein	Owner	Individual ID
0000021061	-	-	-	Familial, autosomal recessive	-	-	-	-	-	Kannabiran C	00024941
0000157445	20/400 OD, 20/1200 OS, nyctalopia, no nystagmus, flat ERG	-	-	Familial, autosomal recessive	05y	-	00y18m	-	-	Bailey Glen	00208836
0000157447	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208833
0000157460	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208852
0000157461	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208832
0000157462	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208853
0000157463	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208854
0000157464	poor vision, onset as infant, ERG flat	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208855
0000157465	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208856
0000157466	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208857
0000157467	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208858
0000157468	Poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208859
0000157469	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208860
0000157470	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208861
0000157471	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208862
0000157472	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208863
0000157473	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208864
0000157474	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208865
0000157475	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208866
0000157476	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208867
0000157477	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208868
0000157478	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208869
0000157479	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208870
0000157480	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208871
0000157481	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208872
0000157482	poor vision, onset as infant, flat ERG	-	-	Familial, autosomal recessive	-	-	-	-	-	Bailey Glen	00208873
0000275977	retinal dystrophy; MIM, 204000	MIM, 204000	-	Familial, autosomal recessive	-	-	-	-	-	LOVD	00382135
0000275978	retinal dystrophy; MIM, 204100 or 613794	MIM, 204100 or 613794	-	Familial, autosomal recessive	-	-	-	-	-	LOVD	00382136
0000275993	Oculocutaneous albinism and others; MIM, 203200	MIM, 203200	-	Familial, autosomal recessive	-	-	-	-	-	LOVD	00382151

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Global Variome shared LOVD

FGFR1 (fibroblast growth factor receptor 1)