Global Variome shared LOVD
MSH6 (mutS homolog 6 (E. coli))
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Curators:
InSiGHT - John-Paul Plazzer
,
Mev Dominguez Valentin
, and
Bryony A Thompson
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Phenotypes for disease #01806 (GD1 (Gaucher disease, type I), OMIM:230800)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
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Text
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all entries beginning with 'p.(Arg'
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combination
Text
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Date
2020
all entries matching the year 2020
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Date
2020-03|2020-04
all entries matching March or April, 2020
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Date
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all entries not matching March, 2020
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Date
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all entries before the year 2020
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Date
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Date
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all entries after June, 2020
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Date
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all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
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Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
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all entries higher than 23
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Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
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all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
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all entries containing 'Asian' but not containing 'Caucasian'
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all entries containing 'Asian' or 'African', but not containing 'Caucasian'
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all entries containing 'South Asian', but not containing 'South East Asian'
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27 entries on 1 page. Showing entries 1 - 27.
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How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000325369
Splenomegaly, three asymptomatic; most very mild
-
-
Unknown
-
-
-
-
-
Jimena Urbano
00435164
0000325371
I.13: splenomegaly, hepatomegaly, thrombocytopenia, cystalgia. I.30: splenomegaly, thrombocytopenia, leukopenia, chronic diarrhea, skin pigmentation. I.31:splenomegaly, hepatomegaly, thrombocytopenia, thrombocytopenia, leukopenia, stature and pubertal developmentdelayed, portal hypertension, irregularity of right humerus
-
GD1
Unknown
-
-
-
-
-
Jimena Urbano
00435166
0000325388
All splenomegaly, 6 patients also hepatomegaly, 7 patients with pancytopenia, 4with bone disease, one (I.39) asymptomatic at present age of 05y
-
GD1
Unknown
-
-
-
-
-
Jimena Urbano
00435165
0000325389
Both: splenomegaly, hepatomegaly, epistaxis. I.8: pancytopenia, femur deformity. I.24: thrombocytopenia
-
GD1
Unknown
-
-
-
-
-
Jimena Urbano
00435184
0000325390
splenomegaly
-
GD1
Unknown
07y
-
-
-
-
Jimena Urbano
00435185
0000325391
splenomegaly, hepatomegaly, macrocephaly
-
GD1
Unknown
09y
-
-
-
-
Jimena Urbano
00435186
0000325392
splenomegaly, thrombocytopenia, anemia, bone pain
-
GD1
Unknown
15y
-
-
-
-
Jimena Urbano
00435187
0000325393
splenomegaly, hepatomegaly, thrombocytopenia
-
GD1
Unknown
10y
-
-
-
-
Jimena Urbano
00435188
0000325394
splenomegaly, hepatomegaly, leukopenia, splenectomy at 9 yr
-
GD1
Unknown
09y
-
-
-
-
Jimena Urbano
00435189
0000325395
splenomegaly, hepatomegaly, epistaxis, easy bruising, femur deformity, conjunctival pingueculae
-
GD1
Unknown
35y
-
-
-
-
Jimena Urbano
00435190
0000325396
splenomegaly, hepatomegaly, femur infarcts
-
GD1
Unknown
05y
-
-
-
-
Jimena Urbano
00435191
0000325398
Atypical parkinson
-
GD1
Unknown
47y
-
-
-
-
Jimena Urbano
00435193
0000325399
splenomegaly, hepatomegaly, digestive hemorrhagia, ulcus gastroduodenal, hepatopathy, skin pigmentation, bone deformities
-
GD1
Unknown
39y
-
-
-
-
Jimena Urbano
00435194
0000325400
splenomegaly, hepatomegaly, mild pancytopenia, epistaxis, bone crisis, femur deformity, skin pigmentation
-
GD1
Unknown
04y
-
-
-
-
Jimena Urbano
00435195
0000325401
splenomegaly, hepatomegaly, anemia, bone disease
-
GD1
Unknown
04y
-
00y07m
-
-
Jimena Urbano
00435196
0000325402
splenomegaly, pancytopenia, bone deformity, aseptic necrosis
-
GD1
Unknown
25y
-
-
-
-
Jimena Urbano
00435197
0000325403
splenomegaly, hepatomegaly, anemia, thrombocytopenia, stature development delayed, jaundice, skin pigmentation
-
GD1
Unknown
36y
-
08y
-
-
Jimena Urbano
00435199
0000325404
splenomegaly, thrombocytopenia, familial factor IX deficiency
-
GD1
Unknown
26y
-
-
-
-
Jimena Urbano
00435200
0000325406
splenomegaly, hepatomegaly, pancytopenia
-
GD1
Unknown
06y
-
-
-
-
Jimena Urbano
00435204
0000325407
splenomegaly, hepatomegaly, epistaxis, pancytopenia
-
GD1
Unknown
87y
-
-
-
-
Jimena Urbano
00435205
0000325408
splenomegaly, hepatomegaly
Gaucher disease
GD1
Familial, autosomal recessive
14y
-
02y06m
-
-
Jimena Urbano
00435206
0000329989
see paper; ..., 5y-deceased (pulmonary complication); severe visceral involvement
Gaucher disease
GD1
Familial, autosomal recessive
05y
-
-
-
-
Johan den Dunnen
00440091
0000329990
see paper; ..., moderate splenomegaly
Gaucher disease
GD1
Familial, autosomal recessive
-
-
-
-
-
Johan den Dunnen
00440092
0000329991
see paper; ..., severe bone disease
Gaucher disease
GD1
Familial, autosomal recessive
-
-
-
-
-
Johan den Dunnen
00440093
0000329992
see paper; ..., mild splenomegaly
Gaucher disease
GD1
Familial, autosomal recessive
-
-
-
-
-
Johan den Dunnen
00440094
0000329993
see paper; ..., severe splenomegaly
Gaucher disease
GD1
Familial, autosomal recessive
-
-
-
-
-
Johan den Dunnen
00440095
0000330008
see paper; ..., 9y-splenectomy; 10y-episodic bone pain, no fractures; 21y-massive hepatomegal, mild abnormalities function tests
Gaucher disease
GD1
Familial, autosomal recessive
21y
03y
-
-
-
Johan den Dunnen
00440110
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