Global Variome shared LOVD
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
View all genes
Create a new gene entry
View all transcripts
Create a new transcript information entry
View all variants
View all variants affecting transcripts
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
Create a new disease information entry
View available phenotype columns
View all screenings
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Phenotypes for disease #03826 (CRCS12 (cancer, colorectal, susceptibility to, type 12 (CRCS-12)), OMIM:615083)
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
Diagnosis/Criteria
: why was individual tested?
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
12 entries on 1 page. Showing entries 1 - 12.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Diagnosis/Criteria
Owner
Individual ID
0000018034
Bilateral ovary cancer 40 years of age Colorectal cancer 48 years of age Multiple adenomas in the colon
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00020263
0000018035
Multiple adenomas in the colon
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00020264
0000018036
Colorectal cancer 43 years of age Multiple adenomas
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00020265
0000018213
Colorectal cancer at 42 years of age Small intestine cancer 54 and 57 years of age Multiple adenomas in colon small intestine and stomach
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00020441
0000018214
Colorectal cancer 38 years of age.
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00020442
0000018215
A single adenoma (not performed colonoscopy for 8 years on date of submission)
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00020443
0000020058
Multiple colorectal adenomas
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00021380
0000020059
Multiple colorectal adenomas
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00022287
0000020061
Colorectal adenomas
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Maren Fridtjofsen Hansen
00022289
0000143841
Ovarian carcinoma Colorectal adenomas (35) Colonic adenocarcinoma (grade 2 with focal mucinous differentiation) Breast carcinoma (triple negative high grade ductal carcinoma)
-
-
Familial, autosomal dominant
-
-
-
-
-
-
Joan Brunet
00183085
0000172066
Intestinal polyps (HP:0200008)
-
-
Familial
40y-59y
-
-
-
-
-
Sarah Collis
00228151
0000172067
Colorectal polyposis HP:0200063, 21 tubular adenomas and 4 hyperplastic polyps removed between ages 40 and 59. Family history of bowel cancer and polyps
-
-
Familial
40y-59y
-
-
-
-
-
Sarah Collis
00228151
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators