Global Variome shared LOVD
CYP2D6 (cytochrome P450, family 2, subfamily D, pol...)
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Curators:
Andrea Gaedigk
and
Lisa Kalman
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Phenotypes for disease #05362 (LIS (lissencephaly))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
35 entries on 1 page. Showing entries 1 - 35.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000119732
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00146778
0000119733
lissencephaly, type II
-
-
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00146780
0000119734
lissencephaly, type II
-
-
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00146781
0000119735
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00146782
0000123855
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00151486
0000124529
lissencephaly, type II
-
-
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152186
0000124530
lissencephaly, type II
-
-
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152187
0000124531
lissencephaly, type II
-
-
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152188
0000124532
lissencephaly, type II
-
-
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152189
0000124533
lissencephaly, type II
-
-
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152190
0000124534
lissencephaly, type II
-
-
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152191
0000124693
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152350
0000124694
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152351
0000124695
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152352
0000124697
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152354
0000124698
lissencephaly, type II
-
-
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00152355
0000124699
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152356
0000124700
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152357
0000124701
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152358
0000124702
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152359
0000124703
lissencephaly, type II
-
-
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00152360
0000124704
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152361
0000124710
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152367
0000124711
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152368
0000124712
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152369
0000124823
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152480
0000124824
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152481
0000124825
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152482
0000124826
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152483
0000124827
lissencephaly, type II
-
-
Unknown
-
-
-
-
Johan den Dunnen
00152484
0000125537
lissencephaly type II
-
see paper; ...
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00152575
0000125565
lissencephaly, type II
-
22w pregnancy termination because of reoccurrence severe quadriventricular hydrocephalus/cerebellar hypoplasia (like fetus F1); fetus dysmorphic features, horizontal narrow palpebral slit, bulging eyes, hypertrichosis cheeks/shoulders
Isolated (sporadic)
-
<0d
-
-
Johan den Dunnen
00152636
0000125566
lissencephaly, type II
-
fetus triventricular hydrocephalus, no encephalocele, no retinal dysplasia, no other visceral abnormalities
Isolated (sporadic)
-
<0d
-
-
Johan den Dunnen
00152637
0000242110
-
-
(+) Abnormal nervous system morphology,(+) Abnormal myelination,(+) Abnormal CNS myelination,(+) Leukodystrophy,(+) Abnormal involuntary eye movements,(+) Nystagmus,(+) Spasticity,(+) Abnormality of movement,(+) Hypogonadism,(+) Male hypogonadism,(+) CNS hypomyelination,(+) Peripheral hypomyelination,(+) Hypoplasia of the corpus callosum
Unknown
02y
-
-
-
Andreas Laner
00320066
0000346978
complex neurodevelopmental disorder
LIS10
HP:0000276, HP:0001250, HP:0001339, HP:0010864, HP:0002187, HP:0003202, HP:0004322, HP:0009055, HP:0100807
Isolated (sporadic)
-
-
-
-
Marketa Wayhelova
00458543
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