Global Variome shared LOVD
SMPD1 (sphingomyelin phosphodiesterase 1, acid lyso...)
LOVD v.3.0 Build 30b [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
Global Variome, with Curator vacancy
View all genes
View SMPD1 gene homepage
View graphs about the SMPD1 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene SMPD1
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene SMPD1
View all variants in gene SMPD1
Full data view for gene SMPD1
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene SMPD1
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene SMPD1
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene SMPD1
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Phenotypes for disease #05427 (ADPKD (kidney, polycystic, disease, autosomal dominant (ADPKD)))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
26 entries on 1 page. Showing entries 1 - 26.
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Owner
Individual ID
0000129147
polycystic kidney disease
-
see paper; ...
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00164037
0000129148
polycystic kidney disease
-
see paper; ...
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00164038
0000129149
polycystic kidney disease
-
see paper; ...
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00164039
0000129150
polycystic kidney disease
-
see paper; ...
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00164040
0000129151
polycystic kidney disease
-
see paper; ...
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00164041
0000129152
polycystic kidney disease
-
see paper; ...
Familial, autosomal dominant
-
-
-
-
-
Johan den Dunnen
00164042
0000129153
polycystic kidney disease
-
see paper; ...
Unknown
-
-
-
-
-
Johan den Dunnen
00164043
0000166826
ADPKD
ADPKD
-
Familial, autosomal dominant
54y
54y
-
-
-
Vilma Mantovani
00218390
0000166830
ADPKD
ADPKD
-
Unknown
47y
-
36y
-
-
Vilma Mantovani
00218392
0000166831
ADPKD
ADPKD
-
Familial, autosomal dominant
43y
-
20y
-
-
Vilma Mantovani
00218398
0000166833
ADPKD
ADPKD
-
Familial, autosomal dominant
32y
-
10y
-
-
Vilma Mantovani
00218400
0000166887
ADPKD
ADPKD
-
Familial, autosomal dominant
42y
42y
32y
-
-
Vilma Mantovani
00218402
0000166888
-
ADPKD
-
-
35y
-
-
-
-
Vilma Mantovani
00218403
0000166889
-
ADPKD
-
Familial, autosomal dominant
25y
25y
-
-
-
Vilma Mantovani
00218404
0000166890
-
ADPKD
-
Familial, autosomal dominant
47y
-
22y
-
-
Vilma Mantovani
00218405
0000166891
-
ADPKD
-
Familial, autosomal dominant
33y
-
-
-
-
Vilma Mantovani
00218406
0000166892
-
ADPKD
-
Familial, autosomal dominant
51y
-
-
-
-
Vilma Mantovani
00218407
0000203028
-
-
-
Unknown
-
-
-
-
-
BIOIATRIKI
00265200
0000203500
ADPKD
ADPKD
small kidney size; kidney volume 300; eGFR decline; chronic kidney disease stage 3 (HP:0012625); no hypertension (HPO_0000822)
Unknown
46y
45y
-
-
-
Rosemary Ekong
00265715
0000232645
tuberous sclerosis
TSC-2;PKD1
bilateral renal cysts
Unknown
-
-
-
-
-
Rosemary Ekong
00306816
0000278350
autosomal dominant polycystic kidney disease
-
-
Familial
48y
50y
-
-
-
Weiting Ting
00383175
0000307638
autosomal dominant polycystic kidney disease
-
Multiple renal cysts (HP:0005562)
Unknown
-
30y
-
-
-
Rosemary Ekong
00415866
0000307639
autosomal dominant polycystic kidney disease
-
Polycystic kidney dysplasia (HP:0000113); Multiple renal cysts (HP:0005562); Hepatic cysts HP:0001407
Unknown
-
45y
-
-
-
Rosemary Ekong
00415867
0000307640
autosomal dominant polycystic kidney disease
-
Multiple renal cysts (HP:0005562); Hepatic cysts HP:0001408
Unknown
-
79y
-
-
-
Rosemary Ekong
00415868
0000335847
-
-
hypertension, early-onset renal dysfunction, hyperuricemia, electrolyte disturbance including hypomagnesemia and hypocalciuria
Isolated (sporadic)
22y
22y
20y
-
Yuhao
Yuhao Liu
00446647
0000351137
dolycystic kidney disease
PKD1
-
Familial, autosomal dominant
-
-
-
-
-
Maria Elena García Paya
00465589
10 per page
25 per page
50 per page
100 per page
Legend
How to query
Screenscraping/webscraping (downloading large amounts of data using scripts) is strictly prohibited.
Use our
APIs
to retrieve data.
Powered by
LOVD v.3.0
Build 30b
LOVD software ©2004-2024
Leiden University Medical Center
Database contents © by their respective submitters and curators