Global Variome shared LOVD
NPTX2 (neuronal pentraxin II)
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Phenotypes for disease #05487 (cancer, rectal (cancer, rectal))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
Tumor/MSI
: tumor MSI (micro-sattelite instability); MSI-H (MSI-high), MSI-L (MSI-low), MSS ( microsatellite stable), ? (unknown), n/a (not analysed)
Diagnosis/Criteria
: why was individual tested?
How to query this table
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Column type
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Text
Arg
all entries containing 'Arg'
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Arg|Ser
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!
Text
!fs
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^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
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Ser)$
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Text
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combination
Text
*|Ter !fs
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Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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65 entries on 1 page. Showing entries 1 - 65.
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How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Tumor/MSI
Diagnosis/Criteria
Owner
Individual ID
0000144109
-
-
rectal, carcinoma
Unknown
-
-
34y
-
MLH1+;MSH2-;MSH6-;PMS2+
-
-
Ian Frayling
00183380
0000144264
-
-
Bethesda positive; MSS
Unknown
-
-
72y
-
MLH1+;MSH2+;MSH6+
-
-
Michael Woods
00183583
0000144265
-
-
Bethesda positive; skin cancer (82y)
Unknown
-
-
35y
-
-
-
-
Michael Woods
00183584
0000144272
-
-
Bethesda positive; 2 TAs (35y), 1 TA (60y), 3 TAs (61y), 3 TAs (62y)
Unknown
-
-
57y
-
-
-
-
Michael Woods
00183591
0000146968
-
-
Additional info: yes; Pedigree available: yes;
Unknown
63y
-
63y
-
-
-
-
Sira Moreno
00187514
0000146978
-
-
Additional info: Rectum adenocarcinoma;
Unknown
25y
-
25y
-
MLH1+;MSH2_weak;MSH6-;PMS2+
MSI-H
-
INSiGHT group
00187545
0000147029
-
-
-
Familial, autosomal dominant
68y
-
68y
-
MLH1+;MSH2+;MSH6-;PMS2+
MSI-H
-
José Luis Soto
00187811
0000147168
-
-
15y girl with a rectal cancer and a tubulovillous adenoma in the sigmoid colon.
Unknown
-
-
15y
-
MLH1-;MSH2+;MSH6+;PMS2-
MSI-H
-
Ian Frayling
00188517
0000147283
-
-
-
Unknown
-
-
59y
-
MLH1+;MSH2+;MSH6-;PMS2+
-
-
InSiGHT - John-Paul Plazzer
00188773
0000147297
-
-
cancer, rectal (47)
Unknown
-
-
47y
-
-
-
-
Michael Woods
00188844
0000147766
-
-
-
Unknown
-
-
47y
-
-
-
-
Peng Nan
00194562
0000147859
-
-
Malignant neoplasm of rectum (C20)
Unknown
-
-
40y
-
MLH1-;MSH2+;MSH6+;PMS2-
MSI-H
-
INSiGHT group
00194768
0000147872
-
-
Malignant neoplasm of rectum (C20)
Unknown
-
-
44y
-
MLH1-;MSH2+;MSH6+;PMS2-
MSI-H
-
INSiGHT group
00194777
0000147934
-
-
Rectum adenocarcinoma
Unknown
-
-
48y
-
MLH1-;MSH2+;MSH6+
MSI-H
-
INSiGHT group
00194865
0000147953
-
-
Rectum adenocarcinoma
Unknown
-
-
30y
-
MLH1-;MSH2+;MSH6+;PMS2-
MSI-H
-
INSiGHT group
00194915
0000147969
-
-
Malignant neoplasm of rectum (C20)
Unknown
-
-
37y
-
-
MSS
-
INSiGHT group
00194931
0000147973
-
-
Malignant neoplasm of rectum (C20)
Unknown
-
-
37y
-
-
MSS
-
INSiGHT group
00194935
0000148120
-
-
Rectum41
Unknown
-
-
41y
-
-
-
-
INSiGHT group
00195129
0000148139
-
-
Rectal tumour: moderately well differentiated infiltrating adenoca
Unknown
-
-
-
-
MLH1+
-
-
INSiGHT group
00195145
0000148200
-
-
Malignant neoplasm of rectum (C020). Last known age: 47y
Unknown
-
-
40y
-
-
-
-
INSiGHT group
00195206
0000148225
-
-
Rectum adenocarcinoma
Unknown
-
-
40y
-
MLH1-;MSH2+;MSH6+;PMS2-
MSI-H
-
INSiGHT group
00195231
0000148379
-
-
Rectum
Unknown
-
-
38y
-
MSH2+;MSH6+;MLH1+;PMS2+
MSS (0/5: BAT25, BAT26, NR-21, NR-24, Momo-27)
-
Ian Frayling
00195806
0000148513
-
-
Rectum (39y) BRAF-wt
Unknown
-
-
39y
-
-
MSI-H
-
Ian Frayling
00196644
0000148605
-
-
Malignant neoplasm of rectum
Unknown
-
-
31y
-
MLH1+;MSH2-;MSH6-;PMS2+
MSI-H
-
INSiGHT group
00197436
0000148629
-
-
-
Unknown
-
-
42y
-
MLH1+;MSH2-;MSH6-;PMS2+
MSI-H
-
INSiGHT group
00197576
0000148668
-
-
-
Unknown
-
-
47y
-
-
-
-
Peng Nan
00197852
0000148669
-
-
-
Unknown
-
-
56y
-
-
-
-
Peng Nan
00197853
0000148672
-
-
-
Unknown
-
-
42y
-
MLH1+;MSH2-;MSH6-;PMS2+
MSI-H
-
INSiGHT group
00197857
0000148673
-
-
-
Unknown
-
-
27y
-
MLH1+;MSH2-;MSH6-;PMS2+
MSI-H
-
INSiGHT group
00197868
0000148791
-
-
-
Unknown
-
-
30y
-
MLH1+;MSH2-;MSH6-;PMS2+
MSI-H
-
INSiGHT group
00198471
0000149198
-
-
-
Unknown
-
-
26y
-
-
-
-
InSiGHT - John-Paul Plazzer
00200939
0000149318
-
-
rectal;carcinoma; BRAF V600E positive
Unknown
-
-
35y
-
MLH1-;MSH2+;MSH6+
MSI-H
referred to Genetics by: Surgeon; referral reason: Gastroenterologist
Ian Frayling
00201502
0000149328
-
-
rectal;carcinoma; BRAF V600E negative
Unknown
-
-
39y
-
-
MSI-H
-
Ian Frayling
00201509
0000149338
-
-
rectal;carcinoma + 2-5 colorectal;AN
Unknown
-
-
49y
-
MLH1+;MSH2-;MSH6-;PMS2+
-
-
Ian Frayling
00201514
0000149345
-
-
Rectal;Carcinoma 37y,
Unknown
-
-
37y
-
-
-
-
Ian Frayling
00201518
0000149349
-
-
rectal;carcinoma
Unknown
-
-
16y
-
MLH1+;MSH2-
MSI-H
referred to Genetics by: Surgeon;
Ian Frayling
00201521
0000149423
-
-
-
Unknown
-
-
38y
-
-
-
-
InSiGHT - John-Paul Plazzer
00201843
0000149424
-
-
Previously IHC was normal.
Unknown
-
-
46y
-
-
MSI was normal
-
InSiGHT - John-Paul Plazzer
00201844
0000149427
-
-
diagnosed with a bowel tumour in mid 40s
Unknown
-
-
-
-
MSH2-;MSH6-
evidence of Microsatellite Instability
-
Joanne Field
00201859
0000149433
-
-
-
Unknown
-
-
28y
-
-
-
-
Ziada-Bouchaar Hadia
00201864
0000149434
-
-
-
Unknown
-
-
41y
-
-
-
-
Ziada-Bouchaar Hadia
00201865
0000149483
-
-
Rectal cancer diagnosed at; age 44; BRAF V600E negative
Unknown
-
-
44y
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202336
0000149489
-
-
; BRAF V600E negative
Unknown
-
-
29y
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202341
0000149657
-
-
CRC; stage A; MSS; family history AD; No duodenal polyps, No duodenal cancer, No gastric polyps; EGD 28y; 21y-CRC rectum; diagnosis: colorectal symptoms; 36 polyps
Unknown
-
21y
-
-
-
-
-
Carli Tops
00202510
0000149668
-
-
CRC rectum stage B; family history AD;; No duodenal polyps, No duodenal cancer, No gastric polyps; EGD 58y; 42y-CRC rectum; diagnosis: colorectal symptoms; polyposis
Unknown
-
40y
-
-
-
-
-
Carli Tops
00202521
0000149670
-
-
rectumca stage B; MSS; family history AD, parents consanguineous; Cervix ca. age 27, Breast cancer (T1N0M0) age 49;; 42y-CRC rectum; diagnosis: colorectal symptoms; 10-50 polyps
Unknown
-
42y
-
-
-
-
-
Carli Tops
00202523
0000149695
-
-
30 polyps; CRC rectum; stage A; Age CRC 42; family history Sporadic;; diagnosis: colorectal symptoms; 30 polyps
Unknown
-
42y
-
-
-
-
-
Carli Tops
00202548
0000150233
-
-
No extracolonic manifestations; two siblings (43; 41 years) colonoscopic polypectomy for colorectal polyps; No upper gastrointestinal polyps; TPC with IPAA; CRC Rectum; 36 polyps; adenomas pancolonic
Unknown
-
39y
-
-
-
-
-
Astrid Out
00203086
0000150237
-
-
CHRPE; TPC with IPAA; CRC Rectum; 350 polyps
Unknown
-
33y
-
-
-
-
-
Astrid Out
00203090
0000150396
-
-
-
Unknown
-
-
-
-
-
-
-
Mette Gaustadnes
00203249
0000150421
-
-
-
Unknown
-
-
-
-
-
-
-
Mette Gaustadnes
00203274
0000150955
-
-
polyposis; 38y-CRC rectum; 30 polyps
Unknown
-
38y
-
-
-
-
-
Guido Plotz
00203808
0000151254
-
-
-
Unknown
-
-
29y
-
MLH1-
MSI-H
-
InSiGHT - John-Paul Plazzer
00204110
0000154624
-
-
Endometrial cancer at age 59, rectum cancer at age 67. Tissue Immunohistochemistry was suspicious for HNPCC, however, the result was nonspecific. Endometrial, breast and colonic cancer in the family
Familial
76y
67y
-
-
-
-
-
Andreas Laner
00206835
0000175589
-
-
-
Unknown
-
24y
-
-
MLH1+;MSH2+;MSH6+;PMS2+
-
-
InSiGHT - John-Paul Plazzer
00235327
0000185530
-
-
-
Familial
-
31y
-
-
-
-
Family history criteria: Bethesda
Gabriel Capella
00245617
0000185547
-
-
-
Familial
-
30y
-
-
-
-
Family history criteria: Bethesda
Gabriel Capella
00245627
0000185553
-
-
-
Familial
-
28y
-
-
MLH1+;MSH2-;MSH6-
MSI
Family history criteria: Amsterdam II
Gabriel Capella
00245630
0000186689
-
-
-
Unknown
-
48y
-
-
MLH1+;MSH2-;MSH6+;PMS2+
MSI assay failed
Universal screening in a research study
InSiGHT - John-Paul Plazzer
00247311
0000186690
-
-
-
Unknown
-
41y
-
-
MLH1+;MSH2+;MSH6+;PMS2+
MSI assay failed
Universal screening in a research study
InSiGHT - John-Paul Plazzer
00247312
0000186692
-
-
Malignant neoplasm of the recto-sigmoid junction; Patient had prior breast cancer [HP:0003002]
Unknown
-
54y
-
-
MLH1+;MSH2+;MSH6+;PMS2+
Unknown
Universal screening in a research study
InSiGHT - John-Paul Plazzer
00247314
0000207759
-
-
-
Unknown
-
44y
-
-
MLH1+;MSH2+;MSH6+;PMS2_weak
MSS
-
InSiGHT - John-Paul Plazzer
00269964
0000271047
-
-
Rectal
Familial, autosomal dominant
-
28y
-
-
-
-
-
Treena Cranston
00375835
0000304506
-
Rectum (Carcinoma; Adenocarcinoma)
-
Unknown
-
72y
-
-
-
-
-
Litika Vermani
00412505
0000304510
-
Rectum (Carcinoma; Adenocarcinoma)
-
Unknown
-
57y
-
-
-
-
Histopathology
Litika Vermani
00412509
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