Global Variome shared LOVD
CTSK (cathepsin K)
LOVD v.3.0 Build 30b [
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Curator:
Thais Fenz Araujo
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Phenotypes for disease #05489 (cancer, colon (cancer, colon))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
Tumor/MSI
: tumor MSI (micro-sattelite instability); MSI-H (MSI-high), MSI-L (MSI-low), MSS ( microsatellite stable), ? (unknown), n/a (not analysed)
Diagnosis/Criteria
: why was individual tested?
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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398 entries on 4 pages. Showing entries 1 - 100.
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Phenotype ID
Phenotype details
Diagnosis/Initial
Diagnosis/Definite
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Tumor/MSI
Diagnosis/Criteria
Owner
Individual ID
0000144275
CRC in family, incident cases
-
-
Unknown
-
-
-
-
-
-
-
Daniel Evans
00183604
0000144276
CRC in family
-
-
Unknown
-
-
58y
-
-
-
-
Daniel Evans
00183605
0000144277
CRC in family, incident cases
-
-
Unknown
-
-
39y
-
-
-
-
Daniel Evans
00183606
0000144279
incident cases
-
-
Unknown
-
-
60y
-
-
-
-
Daniel Evans
00183608
0000144280
CRC in family
-
-
Unknown
-
-
64y
-
-
-
-
Daniel Evans
00183609
0000144281
CRC in family
-
-
Unknown
-
-
72y
-
-
-
-
Daniel Evans
00183610
0000144282
CRC in family
-
-
Unknown
-
-
72y
-
-
-
-
Daniel Evans
00183611
0000149412
right colon cancer
-
-
Unknown
67y
-
-
-
-
-
-
InSiGHT - John-Paul Plazzer
00201836
0000149413
sigmoid colon cancer
-
-
Unknown
71y
-
-
-
-
-
-
InSiGHT - John-Paul Plazzer
00201836
0000149478
-
-
-
Unknown
-
-
>50y
-
MSH2-;MSH6-
MSI-H
-
Esther Sarasola
00202317
0000149482
Cancer of the ascending colon; at age 44;; BRAF V600E negative
-
-
Unknown
-
-
44y
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202335
0000149484
Cancer of the ascending colon; BRAF V600E negative
-
-
Unknown
-
-
45y
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202337
0000149485
Cancer of the ascending colon; BRAF V600E negative
-
-
Unknown
-
-
36y
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202338
0000149486
Cancer of the ascending colon; BRAF V600E negative
-
-
Unknown
-
-
36y
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202339
0000149487
cancer of the ascending colon; BRAF V600E negative
-
-
Unknown
23y
-
-
-
-
MSI-H
-
InSiGHT - John-Paul Plazzer
00202340
0000149492
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202345
0000149493
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202346
0000149495
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202348
0000149497
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202350
0000149498
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202351
0000149499
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202352
0000149500
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202353
0000149502
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202355
0000149504
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202357
0000149506
(FAP);(HNPCC)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202359
0000149507
(FAP);(HNPCC)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202360
0000149508
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202361
0000149509
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202362
0000149510
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202363
0000149511
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202364
0000149512
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202365
0000149513
(FAP);(HNPCC)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202366
0000149514
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202367
0000149515
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202368
0000149516
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202369
0000149517
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202370
0000149518
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202371
0000149519
HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202372
0000149520
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202373
0000149521
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202374
0000149522
(FAP);(HNPCC)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202375
0000149523
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202376
0000149537
FAP;CRC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202390
0000149538
FAP;CRC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202391
0000149539
FAP;CRC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202392
0000149540
FAP;CRC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202393
0000149541
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202394
0000149542
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202395
0000149543
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202396
0000149544
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202397
0000149545
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202398
0000149546
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202399
0000149547
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202400
0000149548
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202401
0000149549
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202402
0000149550
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202403
0000149551
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202404
0000149552
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202405
0000149553
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202406
0000149554
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202407
0000149556
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202409
0000149559
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202412
0000149560
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202413
0000149561
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202414
0000149562
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202415
0000149563
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202416
0000149564
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202417
0000149565
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202418
0000149566
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202419
0000149567
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202420
0000149568
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202421
0000149574
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202427
0000149576
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202429
0000149587
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202440
0000149589
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202442
0000149591
FAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202444
0000149600
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202453
0000149601
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202454
0000149602
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202455
0000149603
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202456
0000149604
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202457
0000149605
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202458
0000149606
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202459
0000149607
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202460
0000149608
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202461
0000149609
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202462
0000149610
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202463
0000149617
(FAP);(AFAP)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202470
0000149618
(FAP);(AFAP)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202471
0000149619
(FAP);(AFAP)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202472
0000149620
FAP;HNPCC
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202473
0000149621
(FAP);(AFAP)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202474
0000149622
(FAP);(AFAP)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202475
0000149623
(FAP);(AFAP)
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202476
0000149624
AFAP;cancer, cervix
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202477
0000149630
-
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202483
0000149633
AFAP; mulitple polyps
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202486
0000149634
AFAP; mulitple polyps
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202487
0000149637
AFAP
-
-
Unknown
-
-
-
-
-
-
-
Astrid Out
00202490
0000149641
Multiple polyps; CRC 2 coecum, 2 ascending colonileum; stage 1 D and 4; Age CRC 41, 41, 41, 41, 41 died of CRC (44); family history Sporadic;; no EGD; 41y-CRC; diagnosis: colorectal symptoms; mulitple polyps
-
-
Unknown
-
41y
-
-
-
-
-
Carli Tops
00202494
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