Global Variome shared LOVD
EIF2B1 (eukaryotic translation initiation factor 2B...)
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Phenotypes for disease #05496 (cancer, kidney (cancer, kidney))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
Protein
: result from protein staining
Diagnosis/Criteria
: why was individual tested?
How to query this table
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Column type
Example
Matches
Text
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all entries containing 'Arg'
space
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Text
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!
Text
!fs
all entries not containing 'fs'
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Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
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Text
="p.0"
all entries exactly matching 'p.0'
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!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
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Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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19 entries on 1 page. Showing entries 1 - 19.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Protein
Diagnosis/Criteria
Owner
Individual ID
0000147284
-
-
Renal cancer at 59y (clear cell)
Unknown
-
-
59y
-
-
-
InSiGHT - John-Paul Plazzer
00188773
0000147291
-
-
young onset(4), Wilm's tumor
Unknown
-
-
4y
-
-
-
Michael Woods
00188802
0000147300
-
-
tumor, Wilms
Unknown
-
-
-
-
-
-
Carli Tops
00188854
0000147635
-
-
tumor, Wilms
Unknown
-
-
-
-
-
-
Carli Tops
00189864
0000147647
-
-
Wilm's tumor
Unknown
-
-
-
-
-
-
Michael Woods
00191180
0000147683
-
-
cancer, kidney (62)
Unknown
-
-
62y
-
-
-
Michael Woods
00192891
0000147686
-
-
cancer, kidney (77)
Unknown
-
-
77y
-
-
-
Michael Woods
00192892
0000147689
-
-
cancer, kidney (62)
Unknown
-
-
62y
-
-
-
Michael Woods
00192893
0000147715
-
-
cancer, renal cell sporadic & controls
Unknown
-
-
-
-
-
-
Michael Woods
00193017
0000147734
-
-
cancer, renal cell sporadic
Unknown
-
-
-
-
-
-
Michael Woods
00193559
0000147816
-
-
renal cell carcinoma (primary also)(44)
Familial, autosomal dominant
-
-
44y
-
-
Colorectal symptoms
Makia Marafie
00194674
0000148481
-
-
sporadic renal cell carcinoma
Unknown
-
-
-
-
-
-
Michael Woods
00196424
0000148592
-
-
sporadic renal cell carcinoma
Unknown
-
-
-
-
-
-
Michael Woods
00197309
0000148623
-
-
sporadic renal cell carcinoma
Unknown
-
-
-
-
-
-
Michael Woods
00197555
0000149406
-
-
Left renal pelvis
Unknown
-
-
58y
-
MSH2-
-
InSiGHT - John-Paul Plazzer
00201831
0000149418
-
-
-
Unknown
-
-
74y
-
-
-
InSiGHT - John-Paul Plazzer
00201838
0000149481
-
-
sister died of colon; cancer at age 53.
Unknown
-
-
48y
-
-
-
InSiGHT - John-Paul Plazzer
00202334
0000201833
-
-
-
Familial
-
64y
-
-
-
-
InSiGHT - John-Paul Plazzer
00263975
0000304311
-
Kidney (Carcinoma; Clear cell renal cell carcinoma
-
Unknown
-
68y
-
-
-
Histopathology
Litika Vermani
00412306
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