Global Variome shared LOVD
MLH1 (mutL homolog 1, colon cancer, nonpolyposis ty...)
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Curators:
InSiGHT - John-Paul Plazzer
,
Bryony A Thompson
, and
Mev Dominguez Valentin
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Phenotypes for disease #05533 (MR;ID (mental retardation (MR, intellectual disability (ID))))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
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Example
Matches
Text
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all entries containing 'Arg'
space
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!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
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Ser)$
all entries ending with 'Ser)'
=""
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all entries exactly matching 'p.0'
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combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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51 entries on 1 page. Showing entries 1 - 51.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Owner
Individual ID
0000157498
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208889
0000157499
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208890
0000157500
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208891
0000157501
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208892
0000157502
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208893
0000157503
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208894
0000157504
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208895
0000157505
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208896
0000157506
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208897
0000157507
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208898
0000157508
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208899
0000157509
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208900
0000157510
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208901
0000157511
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208902
0000157512
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208903
0000157513
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208904
0000157514
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208905
0000157515
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208906
0000157516
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208907
0000157517
intellecutal disability
MRD-49
see paper; …
Isolated (sporadic)
-
-
-
-
Johan den Dunnen
00208908
0000157589
intellectual disability
EAOH
perinatal history unremarkable, transmitted hypotrophic newborn (weight 2,500 g, length 50 cm, head circumference never measured); inconspicuous infant period; global developmental disorder with expressive language development disorder, suspected mental retardation, autistic behavioral traits, axial hypotension; nonspecific dysmorphic stigmata with prominent forehead, broad nasal root, hypertelorism, epicanthus, deep-seated ears
Unknown
05y
-
-
-
Johan den Dunnen
00208982
0000157590
intellectual disability
EAOH
pPerinatal history unremarkable, mature normotrophic newborn (weight 4,000 g, length 53 cm, head circumference 36 cm); inconspicuous infant period; primary developmental disorder with absence of expressive language, moderate mental disability, discrete muscular hypotension, early childhood autism; nonspecific dysmorphic signs with short nose and anteverted nares, small chin, and infraorbital swelling
Unknown
07y
-
-
-
Johan den Dunnen
00208983
0000157591
intellectual disability
EAOH
perinatal history: unremarkable, mature normotrophic newborn (weight 3,800 g, length 54 cm, head circumference 35 cm); inconspicuous infant period; primary developmental disorder with emphasis on language deficits; hyperkinetic behavioral disorder, mild to moderate mental retardation and incontinence; nonspecific dysmorphic signs with broad nose and low standing columella, flat philtrum, narrow upper lip, prominent upper jaw region, and hypopigmentation on the abdomen; somatic growth in the range P3–10.
Unknown
08y
-
-
-
Johan den Dunnen
00208984
0000157622
intellectual disability
EIEE-2
Epilepsy, autism spectrum disorder, intellectual disability, and ketotic hypoglycemiaa
Familial, X-linked
-
-
-
-
Johan den Dunnen
00209017
0000157640
intellectual disability
EIEE-4
Epilepsy, intellectual disability, and focal cortical dysplasia
Familial, autosomal dominant
-
-
-
-
Johan den Dunnen
00209034
0000157649
non-syndromic intellectual disability
MRT-19
mild to moderate ID, no seizures, normal, normal brain MRI
Familial, autosomal recessive
39y
-
-
-
Johan den Dunnen
00209043
0000157650
non-syndromic intellectual disability
MRT-19
mild to moderate ID, no seizures, normal EEG, normal brain MRI
Familial, autosomal recessive
41y
-
-
-
Johan den Dunnen
00209044
0000157651
intellectual disability
MRT-19
profound ID, spasticity, axial hypotonia, dystonia, seizures screaming spells; EEG unprovoked and photic-provoked epileptiform abnormalities; MRI-brain pontine hypoplasia
Familial, autosomal recessive
11y
-
-
-
Johan den Dunnen
00209045
0000157652
intellectual disability
MRT-19
profound ID, spasticity, axial hypotonia, choreoathetosis, seizures screaming spells; EEG disorganized slow background, bilateral frontal epileptiform abnormalities; MRI-brain pontine hypoplasia, thin corpus callosum, temporal lobe hypomyelination
Familial, autosomal recessive
05y
-
-
-
Johan den Dunnen
00209046
0000159656
intellectual disability
-
height 140cm (<3.9SD), weight 37kg (-3.6SD), head circumference 50cm (-4.0 SD), moderate intellectual disability, no motor delay, speech delay, aggressive behaviour, no seizures, smooth philtrum, full lips (+/-), everted lower lip, hypodontia, no conical shaped teeth
Familial, autosomal recessive
18y
-
-
-
Johan den Dunnen
00211173
0000159657
intellectual disability
-
height 137cm (-3.5SD), weight 29.5kg (-3.2SD), head circumference 49cm (-3.6SD), moderate intellectual disability, no motor delay, speech delay, aggressive behaviour, no seizures, smooth philtrum, full lips (+/-), everted lower lip, no hypodontia, no conical shaped teeth
Familial, autosomal recessive
14y
-
-
-
Johan den Dunnen
00211174
0000159658
intellectual disability
-
moderate intellectual disability, no motor delay, speech delay, aggressive behaviour, no seizures
Familial, autosomal recessive
07y
-
-
-
Johan den Dunnen
00211175
0000159659
intellectual disability
-
height 104cm (-4.0SD), head circumference 46.5cm (-4.5SD), moderate intellectual disability, motor delay, speech delay, aggressive behaviour, no seizures, smooth philtrum, no full lips, no everted lower lip, no hypodontia, no conical shaped teeth, hepatomegaly; MRI brain generalized atrophy, enlargement of ventricles
Familial, autosomal recessive
08y
-
-
-
Johan den Dunnen
00211176
0000159660
intellectual disability
-
height 80cm (-2.2SD), head circumference 46cm (-2.5SD), moderate intellectual disability, motor delay, speech delay, no seizures, smooth philtrum, no full lips, no everted lower lip, no hypodontia, no conical shaped teeth
Familial, autosomal recessive
02y
-
-
-
Johan den Dunnen
00211177
0000159661
intellectual disability
-
height 95.5cm (-2.2SD), weight 11.5kg (-3.0SD), head circumference 46.3cm (-2.5SD), intellectual disability, motor delay, speech delay, aggressive behaviour, no seizures, smooth philtrum, full lips, everted lower lip, hypodontia, conical shaped teeth; MRI brain normal
Familial, autosomal recessive
03y03m
-
-
-
Johan den Dunnen
00211178
0000239938
-
-
Global developmental delay; stereotypy; recurrent fever
Isolated (sporadic)
02y
-
-
-
Emanuela Leonardi
00316191
0000239941
-
-
Language impairment; Mild Intellectual Disability
Isolated (sporadic)
03y
-
-
-
Emanuela Leonardi
00316194
0000239942
-
-
Psychiatric disorder, Moderate Intellectual Disability
Isolated (sporadic)
17y
-
-
-
Emanuela Leonardi
00316195
0000239943
-
-
Language impairment, Severe expressive language delay, poor motor coordination
Isolated (sporadic)
03y
-
-
-
Emanuela Leonardi
00316196
0000239944
-
-
Autism, Language impairment, Absent speech
Isolated (sporadic)
02y
-
-
-
Emanuela Leonardi
00316197
0000239945
-
-
Autism
Familial
03y
-
-
-
Emanuela Leonardi
00316198
0000249506
-
-
(+) Cryptorchidism,(+) Hypertelorism,(+) High forehead,(+) Downslanted palpebral fissures,(+) Delayed speech and language development,(+) Single transverse palmar crease,(+) Global developmental delay
Unknown
01y
-
-
-
Andreas Laner
00331314
0000286160
-
-
Autism, Absent speech, Delayed speech and language development
Isolated (sporadic)
02y
-
-
-
Andreas Laner
00392919
0000301094
-
mental retardation (MR, intellectual disability (ID))
delayed language development; mild-moderate mental retardation
Familial, autosomal recessive
-
-
-
-
LOVD
00408976
0000301095
-
mental retardation (MR, intellectual disability (ID))
delayed language development; mild-moderate mental retardation
Familial, autosomal recessive
-
-
-
-
LOVD
00408977
0000301096
-
mental retardation (MR, intellectual disability (ID))
delayed language development; mild-moderate mental retardation
Familial, autosomal recessive
-
-
-
-
LOVD
00408978
0000301097
-
mental retardation (MR, intellectual disability (ID))
delayed language development; mild-moderate mental retardation
Familial, autosomal recessive
-
-
-
-
LOVD
00408979
0000301098
-
mental retardation (MR, intellectual disability (ID))
delayed language development; mild-moderate mental retardation
Familial, autosomal recessive
-
-
-
-
LOVD
00408980
0000337678
-
NEDEGE
Autistic behavior, Absent speech, Abnormal repetitive mannerisms, Reduced eye contact, seizures
Unknown
03y
-
-
-
Andreas Laner
00448490
0000351786
intellectual disability
MRD66
Delayed speech and language development, Neurodevelopmental delay, Atypical behavior, Preauricular skin tag, Restlessness, Short attention span, Sensory seeking
Isolated (sporadic)
07y
-
-
-
Andreas Laner
00466404
0000352680
-
-
Neurodevelopmental delay, Delayed speech and language development, Abnormality of mental function, Reduced attention regulation, Pectus carinatum
Isolated (sporadic)
04y
-
-
-
Andreas Laner
00467473
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