Global Variome shared LOVD
COMP (cartilage oligomeric matrix protein)
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Curator:
Michael Briggs
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Phenotypes for disease #05534 (mitochondrial (mitochondrial disorder))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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39 entries on 1 page. Showing entries 1 - 39.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Owner
Individual ID
0000157618
suspected mitochondrial disorder
DLDD
suspected mitochondrial disorder
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00209013
0000157636
suspected mitochondrial disorder
-
suspected mitochondrial disorder
Maternal, mitochondrial
-
-
-
-
Johan den Dunnen
00209030
0000157646
suspected mitochondrial disorder
LS
suspected mitochondrial disorder
Maternal, mitochondrial
-
-
-
-
Johan den Dunnen
00209040
0000157648
suspected mitochondrial disorder
LS
Leigh syndrome
Maternal, mitochondrial
-
-
-
-
Johan den Dunnen
00209042
0000228720
-
-
-
Maternal, mitochondrial
-
-
-
-
Helen Latsoudis
00301614
0000237058
-
Mitochondrial disorder
neonatal hypertrophic cardiomyopathy encephalopathy severe lactic acidosis Isolated complex IV deficiency
Familial, autosomal recessive
-
-
-
-
Liesbeth T. Wintjes
00311803
0000246573
-
-
Severe intellectual disability, brain imaging abnormalities (pachygyria, polymicrogyria, white matter abnormalities, in retrospect signs of stroke on brain CT), spastic tetraparesis, oral dystonia and dystonia of hands and feet, epilepsy, episodic headaches with nausea and emesis, adverse drug reactions, feeding difficulties, secondary microcephaly in childhood, low body weight, drooling, severe progressive neuromuscular scoliosis and congenital hip dysplasia, dental and gingival abnormalities, facial dysmorphisms
Maternal, mitochondrial
-
-
-
-
Elke de Boer
00328346
0000343286
pyruvate dehydrogenase complex deficiency
-
pshycomotor delay, microcephaly, hypoacusis, Leigh syndrome
Familial, autosomal recessive
-
-
<01y
-
Johan den Dunnen
00454645
0000343287
slowly progressive mitochondrial disease
-
see papr; ..., cerebellar ataxia, optic atrophy, hypoacusis, peripheral neuropathy, intellectual disability
Familial, X-linked recessive
39y
-
01y
-
Johan den Dunnen
00454650
0000343324
complex I deficiency
-
pshycomotor delay, encephalopathy
Familial, autosomal recessive
-
-
0y
-
Daniele Ghezzi
00454696
0000343325
complex I deficiency
-
psycomotor regression, dystonia, leukoencephalopathy
Familial, autosomal recessive
-
-
<1y
-
Daniele Ghezzi
00454697
0000343326
complex II deficiency
-
myopathy
Familial, X-linked
-
-
20y
-
Daniele Ghezzi
00454698
0000343327
complex III deficiency
-
psycomotor regression, dystonia, leukoencephalopathy
Familial, autosomal recessive
-
-
4y
-
Daniele Ghezzi
00454699
0000343328
complex III deficiency
-
leukoencephalopathy
Familial, autosomal recessive
-
-
6y
-
Daniele Ghezzi
00454700
0000343329
complex IV deficiency
-
pshycomotor delay, respiratory distress, microcephaly, epilepsy, pontocerebellar hypoplasia
Familial, autosomal recessive
-
-
<0y
-
Daniele Ghezzi
00454701
0000343330
complex IV deficiency
-
ataxia, neuropathy, leukoencephalopathy
Familial, autosomal recessive
-
-
37y
-
Daniele Ghezzi
00454702
0000343331
mtDNA depletion
-
pshycomotor delay, respiratory distress, epilepsy, leukoencephalopathy
Familial, autosomal recessive
-
-
<0y
-
Daniele Ghezzi
00454703
0000343332
multiple RC complex defect
-
cardiomyopathy
Familial, autosomal recessive
-
-
0y
-
Daniele Ghezzi
00454704
0000343333
multiple RC complex defect
-
cardiomyopathy
Familial, autosomal recessive
-
-
<1y
-
Daniele Ghezzi
00454705
0000343334
multiple RC complex defect
-
cardiomyopathy
Familial, autosomal recessive
-
-
0y
-
Daniele Ghezzi
00454706
0000343335
multiple RC complex defect
-
pshycomotor delay, dystonia, Leigh syndrome
Familial, autosomal recessive
-
-
3y
-
Daniele Ghezzi
00454707
0000343336
pyruvate dehydrogenase complex deficiency
-
Leigh syndrome
Familial, autosomal recessive
-
-
<1y
-
Daniele Ghezzi
00454708
0000343337
pyruvate dehydrogenase complex deficiency
-
pshycomotor delay, hypotonia
Familial, X-linked dominant
-
-
<1y
-
Daniele Ghezzi
00454709
0000343338
-
-
hypertrophic cardiomyopathy
Familial, autosomal recessive
-
-
2y
-
Daniele Ghezzi
00454710
0000343339
-
-
myopathy
Familial, autosomal dominant
-
-
30y
-
Daniele Ghezzi
00454711
0000343340
multiple RC complex defect
-
progressive external ophtalmoparesis
Unknown
-
-
38y
-
Daniele Ghezzi
00454712
0000343341
pyruvate dehydrogenase complex deficiency
-
pshycomotor delay, epileptic encephalopathy
Unknown
-
-
<6m
-
Daniele Ghezzi
00454713
0000343342
multiple RC complex defect
-
pshycomotor delay, epilepsy, leukoencephalopathy
Unknown
-
-
<1y
-
Daniele Ghezzi
00454714
0000343343
-
-
psycomotor delay, intellectual disability, ataxia
Unknown
-
-
5y
-
Daniele Ghezzi
00454715
0000343344
complex IV deficiency
-
pshycomotor delay, myopathy
Unknown
-
-
0y
-
Daniele Ghezzi
00454716
0000343345
complex IV deficiency
-
pshycomotor delay, cerebellar signs
Unknown
-
-
<6m
-
Daniele Ghezzi
00454717
0000343346
multiple RC complex defect
-
pyramidal signs, intellectual disability, leukoencephalopathy
Familial, autosomal recessive
-
-
<0y
-
Daniele Ghezzi
00454718
0000343347
complex IV deficiency
-
pshycomotor delay, peripheral neuropathy, cerebellar signs, leukoencephalopathy
Familial, autosomal recessive
-
-
1y
-
Daniele Ghezzi
00454719
0000343348
pyruvate dehydrogenase complex deficiency
-
psycomotor regression, diabetes, intellectual disability, leukoencephalopathy
Familial, autosomal recessive
-
-
1y6m
-
Daniele Ghezzi
00454720
0000343349
multiple RC complex defect
-
pshycomotor delay, epilepsy
Familial, autosomal dominant
-
-
<1y
-
Daniele Ghezzi
00454721
0000343350
mtDNA depletion
-
respiratory distress, hypotonia
Unknown
-
-
<0y
-
Daniele Ghezzi
00454722
0000343351
-
-
psycomotor regression, leukoencephalopathy
Unknown
-
-
1y
-
Daniele Ghezzi
00454723
0000343352
pyruvate dehydrogenase complex deficiency
-
pshycomotor delay, dystonia, Leigh syndrome
Unknown
-
-
0y
-
Daniele Ghezzi
00454724
0000343353
multiple RC complex defect
-
cardiomyopathy, renal dysfunction
Unknown
-
-
<0y
-
Daniele Ghezzi
00454725
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