Global Variome shared LOVD
FLG (filaggrin)
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Curator:
Michel van Geel
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Phenotypes for disease #05895 (INF (infertility))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
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Column type
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Text
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all entries containing 'Arg'
space
Text
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!
Text
!fs
all entries not containing 'fs'
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Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
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all entries ending with 'Ser)'
=""
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Text
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all entries exactly matching 'p.0'
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Text
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combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
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Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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19 entries on 1 page. Showing entries 1 - 19.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Owner
Individual ID
0000247310
infertility
-
see paper; ..., meiotic arrest
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00329111
0000247311
infertility
-
see paper; ..., meiotic arrest
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00329112
0000247312
infertility
-
see paper; ...
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00329113
0000272063
male infertility
Oligo- astheno-terato-astenozoospermia (OAT)
-
Unknown
-
-
-
-
Ruti Parvari
00376843
0000272064
male infertility
azoospermia
-
Unknown
-
-
-
-
Ruti Parvari
00376836
0000276961
infertility
-
see paper; ...
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00383173
0000295862
gonadal failure
-
see paper; ...
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00403115
0000306591
Azoospermia
-
-
Familial, autosomal recessive
-
-
-
-
Tahir Khan
00414791
0000346434
primary infertility
SPGF96
see paper; ..., non-obstructive azoospermia, no sperm left/ight testes
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00457984
0000346435
primary infertility
POF23
see paper; ..., unexplained primary infertility, regular menstrual cycle
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00457985
0000346436
primary infertility
SPGF22
see paper; ..., non-obstructive azoospermia
Familial, autosomal recessive
-
-
-
-
Johan den Dunnen
00457986
0000350619
-
Female infertility (HP:0008222)
-
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464628
0000350623
-
-
Male infertility (HP:0003251)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464633
0000350624
-
Spermatogenic failure 61 (MIM: 619672)
Male infertility (HP:0003251)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464634
0000350625
-
Spermatogenic failure 61 (MIM: 619672)
Male infertility (HP:0003251)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464635
0000350627
-
-
Male infertility (HP:0003251)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464637
0000350681
-
Spermatogenic failure 64 (MIM: 619696)
Infertility (HP:0000789), Non-obstructive azoospermia (HP:0011961)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464696
0000350682
-
Spermatogenic failure 64 (MIM: 619696)
Male infertility (HP:0003251), Non-obstructive azoospermia (HP:0011961)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464697
0000350685
-
Spermatogenic failure 17 (MIM: 617214)
Infertility (HP:0000789)
Familial, autosomal recessive
-
-
-
-
Rima Slim
00464700
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