Global Variome shared LOVD
F5 (coagulation factor V (proaccelerin, labile factor))
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Curator:
Daniel J Hampshire
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Phenotypes for disease #06989 (cleft (cleft lip with/without cleft palate))
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Diagnosis/Initial
: initial diagnosis, before molecular testing
Diagnosis/Definite
: phenotype individual after molecular testing (OMIM abbreviation)
Phenotype details
: additional information on the phenotype of the individual, preferably use HPO terms only (http://www.human-phenotype-ontology.org/)
Inheritance
: Indicates the inheritance of the phenotype in the family; unknown, familial (autosomal/X-linked, dominant/ recessive), paternal (Y-linked), maternal (mitochondrial), isolated (sporadic) or complex
All options:
Unknown
Familial
Familial, autosomal dominant
Familial, autosomal recessive
Familial, X-linked
Familial, X-linked dominant
Familial, X-linked dominant, male sparing
Familial, X-linked recessive
Paternal, Y-linked
Maternal, mitochondrial
Isolated (sporadic)
Di-genic
Complex
- = Not applicable
Age/Examination
: age at which the individual was examined.
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Diagnosis
: age diagnosis was confirmed
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Age/Onset
: Age first symptoms disease appeared in individual:
35y = 35 years
04y08m = 4 years and 8 months
00y00m01d12h = 1 day and 12 hours
18y? = around 18 years
30y-40y = between 30 and 40 years
>54y = older than 54
? = unknown
Phenotype/Onset
: individual's phenotype at Age/Onset described using HPO
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Column type
Example
Matches
Text
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all entries containing 'Arg'
space
Text
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|
Text
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!
Text
!fs
all entries not containing 'fs'
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Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
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Text
="p.0"
all entries exactly matching 'p.0'
!=""
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Text
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all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
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Date
<2020
all entries before the year 2020
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Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
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Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
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28 entries on 1 page. Showing entries 1 - 28.
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Legend
How to query
Phenotype ID
Diagnosis/Initial
Diagnosis/Definite
Phenotype details
Inheritance
Age/Examination
Age/Diagnosis
Age/Onset
Phenotype/Onset
Owner
Individual ID
0000319079
left-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428161
0000319080
left-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428162
0000319081
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428163
0000319082
left-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428164
0000319083
left-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428165
0000319084
left-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428166
0000319085
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428167
0000319086
left-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428168
0000319087
non-syndromic cleft
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428169
0000319088
bilateral syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428170
0000319089
right-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428171
0000319090
right-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428172
0000319091
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428173
0000319092
right-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428174
0000319093
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428175
0000319094
right-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428176
0000319095
left-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428177
0000319096
left-sided non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428178
0000319097
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428179
0000319098
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428180
0000319099
left-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428181
0000319100
left-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428182
0000319101
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428183
0000319102
syndromic cleft palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428184
0000319103
bilateral non-syndromic cleft lip and palate
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428185
0000319104
right-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428186
0000319105
left-sided non-syndromic cleft lip
-
-
Unknown
-
-
-
-
Johan den Dunnen
00428187
0000344215
Cleft Lip
Cleft Lip
-
Familial, autosomal dominant
-
-
-
-
Miikka Vikkula
00455682
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