(used for variant description)
(last modified December 29, 2016)
This file was created to facilitate the description of sequence variants on transcript NM_022977.2 in the ACSL4 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_008053.1, covering ACSL4 transcript NM_022977.2.
(upstream sequence)
. . g.5025
gcgattcggctggctctgccacacc c.-481
. . . . . . g.5085
accgcgcgcccccgctccgcccgcccctccgggcgcgtcttttccgggctcgcgctgagt c.-421
. . . . . . g.5145
cccgcctccgccggctgtccgggtgcgcgcgcgccgctgcggctttttctctggcctccg c.-361
. . . . . . g.5205
ccgcgcgctcctcctcgtcccagcgctagcgggcacgcggttcctttttgcgagctttcc c.-301
. . . . . | 02 g.42207
gagtgccaggcgccggccggctgcgaagacgcggtgggccgcccctccg | attgaaatcac c.-241
. . . . . | 03 . g.52966
agaagatattcgtgttcttcttaagagaaaaagaggacattt | tagctttctcagttgaag c.-181
| 04 . . . . . g.54786
| gcgtactttattgtcggcttccaaagattactaacttttatctgtatcactaagattgaa c.-121
. . . . . . g.54846
ctgccttggctgtactgctattcttactgctgcttctattattgccttcttcagcacaat c.-61
. . . . . . g.54906
aaggctttcaaaagccaaagaataacaagaaataagcaccattttagaagcctttccact c.-1
. . . . . . g.54966
ATGAAACTTAAGCTAAATGTGCTCACCATTATTTTGCTGCCTGTCCACTTGTTAATAACA c.60
M K L K L N V L T I I L L P V H L L I T p.20
. . . . . . g.55026
ATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCCAAGAAGAAAAAC c.120
I Y S A L I F I P W Y F L T N A K K K N p.40
. . . . . . g.55086
GCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGC c.180
A M A K R I K A K P T S D K P G S P Y R p.60
. . . . . . g.55146
TCTGTCACACACTTCGACTCACTAGCTGTAATAGACATCCCTGGAGCAGATACTCTGGAT c.240
S V T H F D S L A V I D I P G A D T L D p.80
. . . . . . g.55206
AAATTATTTGACCATGCTGTATCCAAGTTTGGGAAGAAGGACAGCCTTGGGACCAGGGAA c.300
K L F D H A V S K F G K K D S L G T R E p.100
. . . . . | 05 . g.55505
ATCCTAAGTGAAGAAAATGAAATGCAGCCAAATGGAAAAGTTTTTAAGAAG | TTAATTCTT c.360
I L S E E N E M Q P N G K V F K K | L I L p.120
. . . . . . g.55565
GGGAATTATAAATGGATGAACTATCTTGAAGTGAATCGCAGAGTGAATAACTTTGGTAGT c.420
G N Y K W M N Y L E V N R R V N N F G S p.140
. . . . . . g.55625
GGACTCACTGCACTGGGACTAAAACCAAAGAACACCATTGCCATCTTCTGTGAGACCAGG c.480
G L T A L G L K P K N T I A I F C E T R p.160
. . . . | 06 . g.57028
GCCGAATGGATGATTGCAGCACAGACCTGCTTTAAGTACAACTTTCCTC | TTGTGACTTTA c.540
A E W M I A A Q T C F K Y N F P L | V T L p.180
. . . . . . g.57088
TATGCCACACTTGGCAAAGAAGCAGTAGTTCATGGGCTAAATGAATCTGAGGCTTCCTAT c.600
Y A T L G K E A V V H G L N E S E A S Y p.200
. . . | 07 . . g.57277
CTGATTACCAGTGTTGAACTTCTGGAAAGTAAACTTAAG | ACTGCATTGTTAGATATCAGT c.660
L I T S V E L L E S K L K | T A L L D I S p.220
. . . . . . g.57337
TGTGTTAAACATATCATTTATGTGGACAATAAGGCTATCAATAAAGCAGAGTACCCTGAA c.720
C V K H I I Y V D N K A I N K A E Y P E p.240
. . . . . | 08 g.59979
GGATTTGAGATTCACAGCATGCAATCAGTAGAAGAGTTGGGATCTAACCCAGAAAACT | TG c.780
G F E I H S M Q S V E E L G S N P E N L | p.260
. . . . . . g.60039
GGCATTCCTCCAAGTAGACCAACGCCTTCAGACATGGCCATTGTTATGTATACTAGTGGT c.840
G I P P S R P T P S D M A I V M Y T S G p.280
. . . . . . g.60099
TCTACTGGCCGACCTAAGGGAGTGATGATGCATCATAGCAATTTGATAGCTGGAATGACA c.900
S T G R P K G V M M H H S N L I A G M T p.300
. . | 09 . . . g.60312
GGCCAGTGTGAAAGAATACCTGGACTGGG | ACCGAAGGACACATATATTGGCTACTTGCCT c.960
G Q C E R I P G L G | P K D T Y I G Y L P p.320
. . . . . . g.60372
TTGGCTCATGTGCTAGAACTGACAGCAGAGATATCTTGCTTTACCTATGGCTGCAGGATT c.1020
L A H V L E L T A E I S C F T Y G C R I p.340
. . . | 10 . . . g.63946
GGATATTCTTCTCCGCTTACACTCTCTGACCAG | TCCAGCAAAATTAAAAAAGGAAGCAAA c.1080
G Y S S P L T L S D Q | S S K I K K G S K p.360
. . . . | 11 . . g.69234
GGAGACTGTACTGTACTGAAGCCCACACTTATGGCTGCTGTTCCG | GAAATCATGGATAGA c.1140
G D C T V L K P T L M A A V P | E I M D R p.380
. . . . . . g.69294
ATTTATAAGAATGTTATGAGCAAAGTCCAAGAGATGAATTATATTCAGAAAACTCTGTTC c.1200
I Y K N V M S K V Q E M N Y I Q K T L F p.400
. . . . . . g.69354
AAGATAGGGTATGATTACAAATTGGAACAGATCAAAAAGGGATATGATGCACCTCTTTGC c.1260
K I G Y D Y K L E Q I K K G Y D A P L C p.420
| 12 . . . . . . g.70174
AATCT | GTTACTGTTTAAAAAGGTCAAGGCCCTGCTGGGAGGGAATGTCCGCATGATGCTG c.1320
N L | L L F K K V K A L L G G N V R M M L p.440
. . . . . . g.70234
TCTGGAGGGGCCCCGCTATCTCCTCAGACACACCGATTCATGAATGTCTGCTTCTGCTGC c.1380
S G G A P L S P Q T H R F M N V C F C C p.460
. . . . . | 13 g.72900
CCAATTGGCCAGGGTTATGGACTGACAGAATCATGTGGTGCTGGGACAGTTACTGAAG | TA c.1440
P I G Q G Y G L T E S C G A G T V T E V | p.480
. . . . . . g.72960
ACTGACTATACTACTGGCAGAGTTGGAGCACCTCTTATTTGCTGTGAAATTAAGCTAAAA c.1500
T D Y T T G R V G A P L I C C E I K L K p.500
. | 14 . . . . . g.75037
GACTGGCAAGAAG | GCGGTTATACAATTAATGACAAGCCAAACCCCAGAGGTGAAATCGTA c.1560
D W Q E G | G Y T I N D K P N P R G E I V p.520
. . . . . . g.75097
ATTGGTGGACAGAACATCTCCATGGGATATTTTAAAAATGAAGAGAAAACAGCAGAAGAT c.1620
I G G Q N I S M G Y F K N E E K T A E D p.540
. . . . . . g.75157
TATTCTGTGGATGAAAATGGACAAAGGTGGTTTTGCACTGGTGATATTGGAGAATTCCAT c.1680
Y S V D E N G Q R W F C T G D I G E F H p.560
. . | 15 . . . . g.76782
CCCGATGGATGTTTACAGATTATAG | ATCGTAAGAAAGATCTAGTGAAGTTACAAGCAGGA c.1740
P D G C L Q I I D | R K K D L V K L Q A G p.580
. . . . . . g.76842
GAGTATGTATCTCTTGGGAAAGTAGAAGCTGCACTGAAGAATTGTCCACTTATTGACAAC c.1800
E Y V S L G K V E A A L K N C P L I D N p.600
. . | 16 . . . . g.78921
ATCTGTGCTTTTGCCAAAAG | TGATCAGTCCTATGTGATCAGTTTTGTGGTTCCTAACCAG c.1860
I C A F A K S | D Q S Y V I S F V V P N Q p.620
. . . . . . g.78981
AAAAGGTTGACACTTTTGGCACAACAGAAAGGGGTAGAAGGAACTTGGGTTGATATCTGC c.1920
K R L T L L A Q Q K G V E G T W V D I C p.640
. . . . . | 17 g.94208
AATAATCCTGCTATGGAAGCTGAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCA | TG c.1980
N N P A M E A E I L K E I R E A A N A M | p.660
. . . . . . g.94268
AAATTGGAGCGATTTGAAATTCCAATCAAGGTTCGATTAAGCCCAGAGCCATGGACCCCT c.2040
K L E R F E I P I K V R L S P E P W T P p.680
. . . . . . g.94328
GAAACTGGTTTGGTAACTGATGCTTTCAAACTGAAAAGGAAGGAGCTGAGGAACCATTAC c.2100
E T G L V T D A F K L K R K E L R N H Y p.700
. . . g.94364
CTCAAAGACATTGAACGAATGTATGGGGGCAAATAA c.2136
L K D I E R M Y G G K X p.711
. . . . . . g.94424
aatgttgttgtcttattgacagttgtgcaggaggtagcctggtggttttcaacctctaga c.*60
. . . . . . g.94484
attttaagcctttgttgaactgttagaatgtaaggtatatcattctaaagatagagtaaa c.*120
. . . . . . g.94544
aagaaaacaaaaccaaaagttattaaaattgttgtccggtttactttaacttagttttgc c.*180
. . . . . . g.94604
atagttctagtgcagctgaaattgaaaagttatttccctttagctgtgttattatagagc c.*240
. . . . . . g.94664
agaaattctgtttttaaaaattagcctaagatatacttgtttttgtaaagaaaaatattt c.*300
. . . . . . g.94724
aatgttgaacaaaataaattggagttggagtagaatgtagtttgaggaaatttgcagctt c.*360
. . . . . . g.94784
ccaatgcctcttgtcttcctatttcagaagtttaaatattaagcatgacagaaaatatgt c.*420
. . . . . . g.94844
attaacactactcaaagcaaaagtgctgcagggctttaaaattctcttccaaccatttat c.*480
. . . . . . g.94904
cttgaaggaaaaattcaatagtaatataatacacaaaatcaaataataccttagaaggta c.*540
. . . . . . g.94964
ttaagattataattgttgcataggttagatatagagtcattgtaatgttgtgaataatta c.*600
. . . . . . g.95024
cagtgcctaaaataagaatagaacaacatatacaacaccaaaaaatatctagtaatatat c.*660
. . . . . . g.95084
ttaaagggaaattgagctgctttttttgaaactttgagatctaaaaataactgtaattat c.*720
. . . . . . g.95144
ttgaatgactaagaggaaagtacattttttgaaatgctgaaaattgcctttctgtgttta c.*780
. . . . . . g.95204
ttcaaactgaaaagctgagaccaagagcaaggaaggtaaaaagttaacaggcaaacattt c.*840
. . . . . . g.95264
tctcttagaaaaggtgataaaatcataagtatttggaattagaacccttgcacagcactg c.*900
. . . . . . g.95324
aacctgggaaagagatttaaactctgaatttatctttgataacagggattgattttaaaa c.*960
. . . . . . g.95384
tgtacatgtattaaattacatttgtaatttaaggtctgtttgctgttgctgattttattc c.*1020
. . . . . . g.95444
ttgatcagtagtttgcatttcagaaagcctttcattttgctttaattttagcaaagcggg c.*1080
. . . . . . g.95504
ttataatgaatgacttccccaatatcttgcttgaacttacaggtgattaacttggatgag c.*1140
. . . . . . g.95564
ttttgggaagttaaagggaagaaaacactgttatcattttttcctgtttgggaagagctt c.*1200
. . . . . . g.95624
agaaactggaaatactagatttgggagaagggcagagttacttgataagggactgatgtt c.*1260
. . . . . . g.95684
tgtgcagtaacttgggagtgtggtttctttttgaatctttaattaaaacctgggattata c.*1320
. . . . . . g.95744
tatccctgataaatattcacacttgaaccatagttactgtaaaatgcaaaaaatcttaat c.*1380
. . . . . . g.95804
actgttattctttgcactttttcttaatcattttttatatatatgcatatatatatgtgt c.*1440
. . . . . . g.95864
gtgtgtgtgttgcttatgttgttttgtacagatgtgggccaccattgcaacaaaatacat c.*1500
. . . . . . g.95924
tctttttgctctaaaatatttatgaagaaaatacttaaatgttatgtatatggtggtaat c.*1560
. . . . . . g.95984
aagggaaaaatcaagtattataaacaagaatgaaggtttttgtaaagatttctgttcagc c.*1620
. . . . . . g.96044
gttttgcaaggtaaaattttaggcaagttttccctgaagttatgtgtatgtgagtattct c.*1680
. . . . . . g.96104
cattcttcccaacttgcctttgaagagtgaaataccattattatcaagtagactactgtt c.*1740
. . . . . . g.96164
cagcttttattcctgccctgctgtttatcccttaagaatgagtttcttagacttttccaa c.*1800
. . . . . . g.96224
tatgtgattttttttcccatttagaatggtgattttaaatgtgtgagtgcatgtactatc c.*1860
. . . . . . g.96284
ttatctcagatatttgcacccccaatctgcccccaactcccaaaagctagaacactgcca c.*1920
. . . . . . g.96344
actgatctgttataggtcctttagaaacacataattaacacttaaggttgggtgctgcta c.*1980
. . . . . . g.96404
attctttgcaaaaatccaaatattgttaagggaccagggagatgccactaccccttgatt c.*2040
. . . . . . g.96464
ttccatctaaaaatatacatgtttatgtaaacaaatctttccatatccatagtgactttt c.*2100
. . . . . . g.96524
caagtatttaagcctaaagattttgatctcacatttttatacctgtttaaattgctcaca c.*2160
. . . . . . g.96584
gttattacatacacatcagccatcaactaaagttgtactttaaaaatttactacaatatg c.*2220
. . . . . . g.96644
tacatttctaagtcaaacacttgtgacttttgctttaattccatgaatgttcctgcctcc c.*2280
. . . . . . g.96704
ttgatatttgtatttattctttttttctctagagtagaggtataattgtgtgatatttca c.*2340
. . . . . . g.96764
gaaatacagataaatgattcaaaaagtcacagttaaggagaatcatgtttctttgatcat c.*2400
. . . . . . g.96824
gaataactgattagtaagtcttgcctatattttcctgatagcatatgacaaatgtttcta c.*2460
. . . . . . g.96884
aggtaacaagatgagaacagataaagattgtgtggtgttttggatttggagagaaatatt c.*2520
. . . . . . g.96944
ttaatttttaaatgcagttacaaattataatgtattcatatttgtactttctgttaaaat c.*2580
. . . . . . g.97004
gcatgattgcagaattgtttagattttgtgtttattcttgatgaaaagctttgtttgttc c.*2640
. . . . . g.97058
ttgtttttaagtttgcactcaaatcttaagaaataaatccacccatgttatcaa c.*2694
(downstream sequence)
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