(used for variant description)
(last modified October 20, 2013)
This file was created to facilitate the description of sequence variants on transcript NM_000029.3 in the AGT gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_008836.1, covering AGT transcript NM_000029.3.
(upstream sequence)
. . g.5028
atcccatgagcgggcagcagggtcagaa c.-481
. . . . . . g.5088
gtggcccccgtgttgcctaagcaagactctcccctgccctctgccctctgcacctccggc c.-421
. . . . . . g.5148
ctgcatgtccctgtggcctcttgggggtacatctcccggggctgggtcagaaggcctggg c.-361
. . . . . . g.5208
tggttggcctcaggctgtcacacacctagggagatgctcccgtttctgggaaccttggcc c.-301
. . . . . . g.5268
ccgactcctgcaaacttcggtaaatgtgtaactcgaccctgcaccggctcactctgttca c.-241
. . . . . . g.5328
gcagtgaaactctgcatcgatcactaagacttcctggaagaggtcccagcgtgagtgtcg c.-181
. . . . . . g.5388
cttctggcatctgtccttctggccagcctgtggtctggccaagtgatgtaaccctcctct c.-121
. . . . . . g.5448
ccagcctgtgcacaggcagcctgggaacagctccatccccacccctcagctataaatagg c.-61
. . . . . . | 02 g.8740
gcatcgtgacccggccgggggaagaagctgccgttgttctgggtactacagcagaag | ggt c.-1
. . . . . . g.8800
ATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGTGTGAGCCTGAGGGCCACC c.60
M R K R A P Q S E M A P A G V S L R A T p.20
. . . . . . g.8860
ATCCTCTGCCTCCTGGCCTGGGCTGGCCTGGCTGCAGGTGACCGGGTGTACATACACCCC c.120
I L C L L A W A G L A A G D R V Y I H P p.40
. . . . . . g.8920
TTCCACCTCGTCATCCACAATGAGAGTACCTGTGAGCAGCTGGCAAAGGCCAATGCCGGG c.180
F H L V I H N E S T C E Q L A K A N A G p.60
. . . . . . g.8980
AAGCCCAAAGACCCCACCTTCATACCTGCTCCAATTCAGGCCAAGACATCCCCTGTGGAT c.240
K P K D P T F I P A P I Q A K T S P V D p.80
. . . . . . g.9040
GAAAAGGCCCTACAGGACCAGCTGGTGCTAGTCGCTGCAAAACTTGACACCGAAGACAAG c.300
E K A L Q D Q L V L V A A K L D T E D K p.100
. . . . . . g.9100
TTGAGGGCCGCAATGGTCGGGATGCTGGCCAACTTCTTGGGCTTCCGTATATATGGCATG c.360
L R A A M V G M L A N F L G F R I Y G M p.120
. . . . . . g.9160
CACAGTGAGCTATGGGGCGTGGTCCATGGGGCCACCGTCCTCTCCCCAACGGCTGTCTTT c.420
H S E L W G V V H G A T V L S P T A V F p.140
. . . . . . g.9220
GGCACCCTGGCCTCTCTCTATCTGGGAGCCTTGGACCACACAGCTGACAGGCTACAGGCA c.480
G T L A S L Y L G A L D H T A D R L Q A p.160
. . . . . . g.9280
ATCCTGGGTGTTCCTTGGAAGGACAAGAACTGCACCTCCCGGCTGGATGCGCACAAGGTC c.540
I L G V P W K D K N C T S R L D A H K V p.180
. . . . . . g.9340
CTGTCTGCCCTGCAGGCTGTACAGGGCCTGCTAGTGGCCCAGGGCAGGGCTGATAGCCAG c.600
L S A L Q A V Q G L L V A Q G R A D S Q p.200
. . . . . . g.9400
GCCCAGCTGCTGCTGTCCACGGTGGTGGGCGTGTTCACAGCCCCAGGCCTGCACCTGAAG c.660
A Q L L L S T V V G V F T A P G L H L K p.220
. . . . . . g.9460
CAGCCGTTTGTGCAGGGCCTGGCTCTCTATACCCCTGTGGTCCTCCCACGCTCTCTGGAC c.720
Q P F V Q G L A L Y T P V V L P R S L D p.240
. . . . . . g.9520
TTCACAGAACTGGATGTTGCTGCTGAGAAGATTGACAGGTTCATGCAGGCTGTGACAGGA c.780
F T E L D V A A E K I D R F M Q A V T G p.260
. . . . . . g.9580
TGGAAGACTGGCTGCTCCCTGATGGGAGCCAGTGTGGACAGCACCCTGGCTTTCAACACC c.840
W K T G C S L M G A S V D S T L A F N T p.280
. | 03 . . . . . g.13434
TACGTCCACTTCCAAG | GGAAGATGAAGGGCTTCTCCCTGCTGGCCGAGCCCCAGGAGTTC c.900
Y V H F Q G | K M K G F S L L A E P Q E F p.300
. . . . . . g.13494
TGGGTGGACAACAGCACCTCAGTGTCTGTTCCCATGCTCTCTGGCATGGGCACCTTCCAG c.960
W V D N S T S V S V P M L S G M G T F Q p.320
. . . . . . g.13554
CACTGGAGTGACATCCAGGACAACTTCTCGGTGACTCAAGTGCCCTTCACTGAGAGCGCC c.1020
H W S D I Q D N F S V T Q V P F T E S A p.340
. . . . . . g.13614
TGCCTGCTGCTGATCCAGCCTCACTATGCCTCTGACCTGGACAAGGTGGAGGGTCTCACT c.1080
C L L L I Q P H Y A S D L D K V E G L T p.360
. . . . | 04 . . g.15269
TTCCAGCAAAACTCCCTCAACTGGATGAAGAAACTATCTCCCCG | GACCATCCACCTGACC c.1140
F Q Q N S L N W M K K L S P R | T I H L T p.380
. . . . . . g.15329
ATGCCCCAACTGGTGCTGCAAGGATCTTATGACCTGCAGGACCTGCTCGCCCAGGCTGAG c.1200
M P Q L V L Q G S Y D L Q D L L A Q A E p.400
. . . . . . g.15389
CTGCCCGCCATTCTGCACACCGAGCTGAACCTGCAAAAATTGAGCAATGACCGCATCAGG c.1260
L P A I L H T E L N L Q K L S N D R I R p.420
| 05 . . . . . g.16312
GTGGGGGAG | GTGCTGAACAGCATTTTTTTTGAGCTTGAAGCGGATGAGAGAGAGCCCACA c.1320
V G E | V L N S I F F E L E A D E R E P T p.440
. . . . . . g.16372
GAGTCTACCCAACAGCTTAACAAGCCTGAGGTCTTGGAGGTGACCCTGAACCGCCCATTC c.1380
E S T Q Q L N K P E V L E V T L N R P F p.460
. . . . . . g.16432
CTGTTTGCTGTGTATGATCAAAGCGCCACTGCCCTGCACTTCCTGGGCCGCGTGGCCAAC c.1440
L F A V Y D Q S A T A L H F L G R V A N p.480
. g.16450
CCGCTGAGCACAGCATGA c.1458
P L S T A X p.485
. . . . . . g.16510
ggccagggccccagaacacagtgcctggcaaggcctctgcccctggcctttgaggcaaag c.*60
. . . . . . g.16570
gccagcagcagataacaaccccggacaaatcagcgatgtgtcacccccagtctcccacct c.*120
. . . . . . g.16630
tttcttctaatgagtcgactttgagctggaaagcagccgtttctccttggtctaagtgtg c.*180
. . . . . . g.16690
ctgcatggagtgagcagtagaagcctgcagcggcacaaatgcacctcccagtttgctggg c.*240
. . . . . . g.16750
tttattttagagaatgggggtggggaggcaagaaccagtgtttagcgcgggactactgtt c.*300
. . . . . . g.16810
ccaaaaagaattccaaccgaccagcttgtttgtgaaacaaaaaagtgttcccttttcaag c.*360
. . . . . . g.16870
ttgagaacaaaaattgggttttaaaattaaagtatacatttttgcattgccttcggtttg c.*420
. . . . . . g.16930
tatttagtgtcttgaatgtaagaacatgacctccgtgtagtgtctgtaataccttagttt c.*480
. . . . . . g.16990
tttccacagatgcttgtgatttttgaacaatacgtgaaagatgcaagcacctgaatttct c.*540
. . . . . . g.17050
gtttgaatgcggaaccatagctggttatttctcccttgtgttagtaataaacgtcttgcc c.*600
. g.17068
acaataagcctccaaaaa c.*618
(downstream sequence)
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