Alstrom syndrome 1 (ALMS1) - coding DNA reference sequence

(used for variant description)

(last modified November 11, 2020)


This file was created to facilitate the description of sequence variants on transcript NM_015120.4 in the ALMS1 gene based on a coding DNA reference sequence following the HGVS recommendations.

The sequence was taken from NG_011690.1, covering ALMS1 transcript NM_015120.4.


Please note that introns are available by clicking on the exon numbers above the sequence.
 (upstream sequence)
           .         .         .         .         .                g.5051
          aggcgggcggcactgcgcctaagctgggccacaaccgccagtcagggctct       c.-61

 .         .         .         .         .         .                g.5111
 ccccttcccctccctccccccctcctcctcctcctctgccgcccagagcgagacaccaac       c.-1

          .         .         .         .         .         .       g.5171
 ATGGAGCCCGAGGATCTGCCATGGCCGGGCGAGCTGGAGGAGGAGGAGGAGGAGGAGGAG       c.60
 M  E  P  E  D  L  P  W  P  G  E  L  E  E  E  E  E  E  E  E         p.20

          .         .         .         .         .         .       g.5231
 GAGGAGGAGGAGGAGGAAGAGGAGGAGGCTGCAGCGGCGGCGGCGGCGAACGTGGACGAC       c.120
 E  E  E  E  E  E  E  E  E  A  A  A  A  A  A  A  N  V  D  D         p.40

          .         .         .         .         .         .       g.5291
 GTAGTGGTCGTGGAGGAGGTGGAGGAAGAGGCGGGGCGGGAGTTGGACTCCGACTCTCAC       c.180
 V  V  V  V  E  E  V  E  E  E  A  G  R  E  L  D  S  D  S  H         p.60

          .         .         .         .         .         .       g.5351
 TACGGGCCCCAGCATCTGGAAAGTATAGACGACGAGGAGGACGAGGAGGCCAAGGCCTGG       c.240
 Y  G  P  Q  H  L  E  S  I  D  D  E  E  D  E  E  A  K  A  W         p.80

          .         .         .         .         .         .       g.5411
 CTGCAGGCGCACCCCGGCAGGATTTTGCCTCCGCTGTCGCCCCCGCAGCACCGCTACTCG       c.300
 L  Q  A  H  P  G  R  I  L  P  P  L  S  P  P  Q  H  R  Y  S         p.100

          .         .        | 02.         .         .         .    g.27900
 GAGGGCGAGCGGACCTCCCTGGAGAAG | ATTGTTCCATTGACCTGTCATGTATGGCAACAG    c.360
 E  G  E  R  T  S  L  E  K   | I  V  P  L  T  C  H  V  W  Q  Q      p.120

          .         .         .         .         .         .       g.27960
 ATAGTATATCAAGGCAATAGTAGAACACAAATTTCTGATACTAATGTGGTCTGTTTGGAA       c.420
 I  V  Y  Q  G  N  S  R  T  Q  I  S  D  T  N  V  V  C  L  E         p.140

          .         .         .    | 03    .         .         .    g.38395
 ACAACAGCTCAGCGGGGTTCTGGGGATGATCAG | AAAACAGAATCTTGGCATTGTCTTCCT    c.480
 T  T  A  Q  R  G  S  G  D  D  Q   | K  T  E  S  W  H  C  L  P      p.160

          .         .         .         .         .         .       g.38455
 CAAGAAATGGACTCTTCCCAAACCTTGGATACATCCCAGACTAGGTTTAATGTGAGAACG       c.540
 Q  E  M  D  S  S  Q  T  L  D  T  S  Q  T  R  F  N  V  R  T         p.180

          .         .         .         .         .         .       g.38515
 GAAGATACTGAAGTGACAGACTTCCCCTCTCTGGAGGAGGGCATATTGACGCAATCAGAA       c.600
 E  D  T  E  V  T  D  F  P  S  L  E  E  G  I  L  T  Q  S  E         p.200

          .         .         .         .          | 04        .    g.42113
 AATCAAGTAAAGGAACCCAACAGAGATCTCTTCTGTTCTCCACTGCTAG | TCATACAAGAT    c.660
 N  Q  V  K  E  P  N  R  D  L  F  C  S  P  L  L  V |   I  Q  D      p.220

          .         .         .         .         .         .       g.42173
 AGCTTTGCTTCTCCTGATTTGCCTTTGCTGACCTGTTTGACACAAGACCAAGAATTTGCG       c.720
 S  F  A  S  P  D  L  P  L  L  T  C  L  T  Q  D  Q  E  F  A         p.240

          .         .         .         .        | 05.         .    g.43688
 CCTGATTCTTTATTTCATCAAAGTGAACTAAGTTTTGCACCTCTGAG | GGGAATTCCTGAT    c.780
 P  D  S  L  F  H  Q  S  E  L  S  F  A  P  L  R  |  G  I  P  D      p.260

          .         .         .         .         .         .       g.43748
 AAGTCTGAAGATACTGAATGGTCTTCTCGACCATCGGAAGTTAGTGAAGCTTTATTCCAG       c.840
 K  S  E  D  T  E  W  S  S  R  P  S  E  V  S  E  A  L  F  Q         p.280

          .         .         .         .         .         .       g.43808
 GCTACTGCAGAAGTAGCTTCAGACTTAGCAAGCAGTCGCTTTAGTGTATCTCAGCACCCG       c.900
 A  T  A  E  V  A  S  D  L  A  S  S  R  F  S  V  S  Q  H  P         p.300

          .         .         .         .         .         .       g.43868
 CTTATAGGCAGCACAGCTGTTGGGTCTCAGTGCCCTTTTTTACCTTCTGAACAAGGGAAT       c.960
 L  I  G  S  T  A  V  G  S  Q  C  P  F  L  P  S  E  Q  G  N         p.320

          .         .         .         .         .         .       g.43928
 AATGAAGAGACTATTTCGTCTGTTGATGAACTGAAAATTCCCAAAGACTGTGATCGTTAT       c.1020
 N  E  E  T  I  S  S  V  D  E  L  K  I  P  K  D  C  D  R  Y         p.340

          .         .         .         .         .         .       g.43988
 GATGATCTTTGTTCATATATGTCATGGAAGACACGAAAAGATACACAGTGGCCTGAAAAC       c.1080
 D  D  L  C  S  Y  M  S  W  K  T  R  K  D  T  Q  W  P  E  N         p.360

          .         .         .         .         .         .       g.44048
 AATTTAGCTGATAAAGATCAAGTTTCAGTTGCAACTTCATTTGACATAACTGATGAAAAC       c.1140
 N  L  A  D  K  D  Q  V  S  V  A  T  S  F  D  I  T  D  E  N         p.380

          .         .         .         .         .         .       g.44108
 ATAGCTACTAAAAGAAGTGACCATTTTGATGCTGCTCGTTCATATGGGCAGTATTGGACA       c.1200
 I  A  T  K  R  S  D  H  F  D  A  A  R  S  Y  G  Q  Y  W  T         p.400

          .         .         .         . | 06       .         .    g.45718
 CAGGAAGATTCATCTAAGCAGGCAGAAACATATTTAACCA | AGGGCCTGCAGGGGAAGGTT    c.1260
 Q  E  D  S  S  K  Q  A  E  T  Y  L  T  K |   G  L  Q  G  K  V      p.420

          .         .         .         .         .         .       g.45778
 GAGTCTGACGTCATTACTCTGGATGGCCTAAATGAAAATGCTGTTGTATGCAGTGAAAGA       c.1320
 E  S  D  V  I  T  L  D  G  L  N  E  N  A  V  V  C  S  E  R         p.440

          .         .  | 07      .         .         .         .    g.51482
 GTTGCTGAACTACAAAGAAAG | CCAACAAGAGAGTCGGAATATCACTCTTCAGATCTCAGA    c.1380
 V  A  E  L  Q  R  K   | P  T  R  E  S  E  Y  H  S  S  D  L  R      p.460

          .         .         .         .         .      | 08  .    g.67212
 ATGTTGAGGATGTCTCCTGACACTGTGCCAAAGGCTCCTAAACATTTAAAAGCAG | GAGAC    c.1440
 M  L  R  M  S  P  D  T  V  P  K  A  P  K  H  L  K  A  G |   D      p.480

          .         .         .         .         .         .       g.67272
 ACTTCTAAAGGAGGCATAGCTAAAGTTACTCAATCCAACTTGAAGTCAGGCATCACTACC       c.1500
 T  S  K  G  G  I  A  K  V  T  Q  S  N  L  K  S  G  I  T  T         p.500

          .         .         .         .         .         .       g.67332
 ACTCCTGTTGATTCAGACATTGGATCTCATTTATCCTTGTCCCTTGAGGACCTGTCTCAG       c.1560
 T  P  V  D  S  D  I  G  S  H  L  S  L  S  L  E  D  L  S  Q         p.520

          .         .         .         .         .         .       g.67392
 TTGGCTGTAAGTTCTCCTCTAGAAACTACTACTGGTCAACACACTGATACTCTCAACCAA       c.1620
 L  A  V  S  S  P  L  E  T  T  T  G  Q  H  T  D  T  L  N  Q         p.540

          .         .         .         .         .         .       g.67452
 AAGACATTAGCAGATACTCATCTAACTGAAGAGACTCTGAAAGTCACAGCTATTCCTGAA       c.1680
 K  T  L  A  D  T  H  L  T  E  E  T  L  K  V  T  A  I  P  E         p.560

          .         .         .         .         .         .       g.67512
 CCAGCTGACCAGAAGACTGCAACACCAACAGTACTCTCTAGTTCCCACTCACATAGGGGG       c.1740
 P  A  D  Q  K  T  A  T  P  T  V  L  S  S  S  H  S  H  R  G         p.580

          .         .         .         .         .         .       g.67572
 AAGCCCAGCATTTTCTACCAGCAGGGCTTGCCAGACAGTCATCTAACTGAAGAGGCTTTG       c.1800
 K  P  S  I  F  Y  Q  Q  G  L  P  D  S  H  L  T  E  E  A  L         p.600

          .         .         .         .         .         .       g.67632
 AAAGTTTCAGCTGCTCCTGGACTAGCTGACCAGACAACTGGCATGTCAACTCTAACCTCT       c.1860
 K  V  S  A  A  P  G  L  A  D  Q  T  T  G  M  S  T  L  T  S         p.620

          .         .         .         .         .         .       g.67692
 ACTTCCTACTCACATAGAGAGAAGCCTGGTACTTTTTACCAACAAGAGTTACCAGAGAGT       c.1920
 T  S  Y  S  H  R  E  K  P  G  T  F  Y  Q  Q  E  L  P  E  S         p.640

          .         .         .         .         .         .       g.67752
 AACTTAACCGAAGAGCCTTTGGAAGTTTCAGCTGCTCCTGGCCCAGTGGAGCAGAAGACG       c.1980
 N  L  T  E  E  P  L  E  V  S  A  A  P  G  P  V  E  Q  K  T         p.660

          .         .         .         .         .         .       g.67812
 GGAATACCTACAGTATCCTCTACATCCCACTCACATGTAGAGGACCTCCTCTTTTTCTAT       c.2040
 G  I  P  T  V  S  S  T  S  H  S  H  V  E  D  L  L  F  F  Y         p.680

          .         .         .         .         .         .       g.67872
 CGACAGACCTTGCCAGATGGTCATCTAACTGATCAGGCTCTGAAAGTCTCAGCTGTGTCT       c.2100
 R  Q  T  L  P  D  G  H  L  T  D  Q  A  L  K  V  S  A  V  S         p.700

          .         .         .         .         .         .       g.67932
 GGACCAGCTGACCAGAAGACTGGGACAGCAACAGTACTCTCTACTCCCCACTCACATAGA       c.2160
 G  P  A  D  Q  K  T  G  T  A  T  V  L  S  T  P  H  S  H  R         p.720

          .         .         .         .         .         .       g.67992
 GAGAAGCCTGGTATTTTTTACCAACAAGAGTTCGCAGACAGTCATCAAACTGAAGAGACT       c.2220
 E  K  P  G  I  F  Y  Q  Q  E  F  A  D  S  H  Q  T  E  E  T         p.740

          .         .         .         .         .         .       g.68052
 CTTACTAAAGTTTCAGCCACTCCTGGACCAGCTGACCAGAAGACTGAGATACCAGCAGTA       c.2280
 L  T  K  V  S  A  T  P  G  P  A  D  Q  K  T  E  I  P  A  V         p.760

          .         .         .         .         .         .       g.68112
 CAGTCTAGTTCTTACTCACAAAGAGAAAAGCCTAGTATTTTGTACCCACAGGACTTAGCA       c.2340
 Q  S  S  S  Y  S  Q  R  E  K  P  S  I  L  Y  P  Q  D  L  A         p.780

          .         .         .         .         .         .       g.68172
 GACAGTCATCTACCTGAAGAGGGTCTGAAAGTTTCAGCTGTTGCTGGACCAGCTGACCAG       c.2400
 D  S  H  L  P  E  E  G  L  K  V  S  A  V  A  G  P  A  D  Q         p.800

          .         .         .         .         .         .       g.68232
 AAGACTGGCCTACCAACAGTACCCTCTAGTGCATACTCACACAGAGAGAAGCTCCTTGTT       c.2460
 K  T  G  L  P  T  V  P  S  S  A  Y  S  H  R  E  K  L  L  V         p.820

          .         .         .         .         .         .       g.68292
 TTCTACCAACAGGCCTTGCTGGACAGCCATCTACCCGAAGAGGCTCTGAAAGTTTCAGCT       c.2520
 F  Y  Q  Q  A  L  L  D  S  H  L  P  E  E  A  L  K  V  S  A         p.840

          .         .         .         .         .         .       g.68352
 GTTTCTGGACCAGCTGACGGAAAGACTGGGACACCAGCTGTAACCTCTACTTCCTCTGCG       c.2580
 V  S  G  P  A  D  G  K  T  G  T  P  A  V  T  S  T  S  S  A         p.860

          .         .         .         .         .         .       g.68412
 TCCTCTTCACTTGGAGAAAAGCCCAGTGCTTTCTATCAGCAGACCTTACCCAATAGTCAT       c.2640
 S  S  S  L  G  E  K  P  S  A  F  Y  Q  Q  T  L  P  N  S  H         p.880

          .         .         .         .         .         .       g.68472
 CTAACTGAAGAGGCTCTGAAAGTATCAATTGTTCCTGGACCAGGTGATCAGAAGACTGGG       c.2700
 L  T  E  E  A  L  K  V  S  I  V  P  G  P  G  D  Q  K  T  G         p.900

          .         .         .         .         .         .       g.68532
 ATACCCTCAGCACCATCTAGTTTCTACTCACACAGAGAGAAGCCCATTATTTTTTCCCAG       c.2760
 I  P  S  A  P  S  S  F  Y  S  H  R  E  K  P  I  I  F  S  Q         p.920

          .         .         .         .         .         .       g.68592
 CAGACCCTGCCAGACTTTCTTTTCCCTGAAGAAGCTCTGAAGGTTTCAGCTGTTTCTGTA       c.2820
 Q  T  L  P  D  F  L  F  P  E  E  A  L  K  V  S  A  V  S  V         p.940

          .         .         .         .         .         .       g.68652
 TTGGCTGCCCAGAAGACTGGGACACCAACAGTGTCCTCTAATTCTCACTCACATAGCGAG       c.2880
 L  A  A  Q  K  T  G  T  P  T  V  S  S  N  S  H  S  H  S  E         p.960

          .         .         .         .         .         .       g.68712
 AAATCTAGTGTTTTCTACCAGCAAGAGTTGCCAGACAGTGATCTACCTAGAGAATCTCTG       c.2940
 K  S  S  V  F  Y  Q  Q  E  L  P  D  S  D  L  P  R  E  S  L         p.980

          .         .         .         .         .         .       g.68772
 AAAATGTCTGCTATTCCTGGACTGACTGACCAGAAGACTGTCCCAACACCAACAGTACCT       c.3000
 K  M  S  A  I  P  G  L  T  D  Q  K  T  V  P  T  P  T  V  P         p.1000

          .         .         .         .         .         .       g.68832
 TCAGGTTCCTTCTCACATAGAGAGAAGCCCAGTATTTTCTATCAACAGGAGTGGCCAGAT       c.3060
 S  G  S  F  S  H  R  E  K  P  S  I  F  Y  Q  Q  E  W  P  D         p.1020

          .         .         .         .         .         .       g.68892
 AGTTATGCAACTGAAAAGGCTCTGAAAGTTTCAACTGGCCCTGGACCAGCTGACCAGAAG       c.3120
 S  Y  A  T  E  K  A  L  K  V  S  T  G  P  G  P  A  D  Q  K         p.1040

          .         .         .         .         .         .       g.68952
 ACTGAGATACCAGCAGTACAGTCTAGTTCTTACCCACAGAGGGAGAAGCCTAGTGTTTTG       c.3180
 T  E  I  P  A  V  Q  S  S  S  Y  P  Q  R  E  K  P  S  V  L         p.1060

          .         .         .         .         .         .       g.69012
 TACCCACAGGTGTTATCAGACAGTCATCTACCTGAAGAGAGTCTGAAAGTTTCAGCCTTC       c.3240
 Y  P  Q  V  L  S  D  S  H  L  P  E  E  S  L  K  V  S  A  F         p.1080

          .         .         .         .         .         .       g.69072
 CCTGGACCAGCTGACCAGATGACTGACACACCAGCAGTACCGTCTACTTTCTACTCACAA       c.3300
 P  G  P  A  D  Q  M  T  D  T  P  A  V  P  S  T  F  Y  S  Q         p.1100

          .         .         .         .         .         .       g.69132
 AGAGAGAAGCCTGGTATTTTCTACCAACAGACCTTGCCAGAGAGTCATCTGCCTAAAGAG       c.3360
 R  E  K  P  G  I  F  Y  Q  Q  T  L  P  E  S  H  L  P  K  E         p.1120

          .         .         .         .         .         .       g.69192
 GCTCTGAAAATTTCAGTAGCTCCTGGACTAGCAGACCAGAAGACTGGCACACCAACTGTA       c.3420
 A  L  K  I  S  V  A  P  G  L  A  D  Q  K  T  G  T  P  T  V         p.1140

          .         .         .         .         .         .       g.69252
 ACCTCAACTTCCTACTCACAACATAGAGAAAAGCCCAGCATTTTCCACCAGCAGGCCTTG       c.3480
 T  S  T  S  Y  S  Q  H  R  E  K  P  S  I  F  H  Q  Q  A  L         p.1160

          .         .         .         .         .         .       g.69312
 CCAGGTACTCATATACCTGAAGAGGCTCAGAAAGTTTCAGCTGTTACTGGACCAGGTAAC       c.3540
 P  G  T  H  I  P  E  E  A  Q  K  V  S  A  V  T  G  P  G  N         p.1180

          .         .         .         .         .         .       g.69372
 CAGAAGACTTGGATACCAAGAGTACTTTCTACCTTCTACTCACAAAGAGAGAAACCTGGT       c.3600
 Q  K  T  W  I  P  R  V  L  S  T  F  Y  S  Q  R  E  K  P  G         p.1200

          .         .         .         .         .         .       g.69432
 ATTTTCTATCAACAGACCTTGCCAGGTAGTCACATACCTGAAGAGGCACAGAAAGTTTCA       c.3660
 I  F  Y  Q  Q  T  L  P  G  S  H  I  P  E  E  A  Q  K  V  S         p.1220

          .         .         .         .         .         .       g.69492
 CCTGTTCTTGGACCAGCTGACCAGAAGACTGGGACACCAACTCCAACCTCTGCTTCTTAC       c.3720
 P  V  L  G  P  A  D  Q  K  T  G  T  P  T  P  T  S  A  S  Y         p.1240

          .         .         .         .         .         .       g.69552
 TCACACACAGAGAAGCCTGGTATTTTCTACCAACAGGTCTTGCCAGATAATCATCCAACT       c.3780
 S  H  T  E  K  P  G  I  F  Y  Q  Q  V  L  P  D  N  H  P  T         p.1260

          .         .         .         .         .         .       g.69612
 GAAGAGGCTCTGAAAATTTCAGTTGCCTCTGAACCAGTTGACCAGACAACTGGCACACCA       c.3840
 E  E  A  L  K  I  S  V  A  S  E  P  V  D  Q  T  T  G  T  P         p.1280

          .         .         .         .         .         .       g.69672
 GCTGTAACCTCTACTTCCTACTCACAATATAGAGAGAAGCCCAGCATTTTCTACCAACAG       c.3900
 A  V  T  S  T  S  Y  S  Q  Y  R  E  K  P  S  I  F  Y  Q  Q         p.1300

          .         .         .         .         .         .       g.69732
 TCGTTGCCAAGTAGTCATCTAACTGAAGAGGCTAAGAATGTTTCAGCGGTTCCTGGACCA       c.3960
 S  L  P  S  S  H  L  T  E  E  A  K  N  V  S  A  V  P  G  P         p.1320

          .         .         .         .         .         .       g.69792
 GCTGACCAGAAGACTGTGATACCAATTTTACCCTCTACTTTCTACTCACACACAGAGAAG       c.4020
 A  D  Q  K  T  V  I  P  I  L  P  S  T  F  Y  S  H  T  E  K         p.1340

          .         .         .         .         .         .       g.69852
 CCTGGTGTTTTCTACCAACAGGTCTTGCCACATAGTCATCCAACTGAAGAGGCTCTGAAA       c.4080
 P  G  V  F  Y  Q  Q  V  L  P  H  S  H  P  T  E  E  A  L  K         p.1360

          .         .         .         .         .         .       g.69912
 ATTTCAGTTGCCTCTGAACCAGTTGACCAGACAACTGGCACACCAACTGTAACCTCTACT       c.4140
 I  S  V  A  S  E  P  V  D  Q  T  T  G  T  P  T  V  T  S  T         p.1380

          .         .         .         .         .         .       g.69972
 TCTTACTCACAACATACAGAGAAGCCGAGTATTTTCTACCAACAGTCGTTGCCAGGTAGT       c.4200
 S  Y  S  Q  H  T  E  K  P  S  I  F  Y  Q  Q  S  L  P  G  S         p.1400

          .         .         .         .         .         .       g.70032
 CATCTAACTGAAGAGGCTAAGAACGTTTCAGCGGTTCCTGGACCAGGTGACCGGAAGACT       c.4260
 H  L  T  E  E  A  K  N  V  S  A  V  P  G  P  G  D  R  K  T         p.1420

          .         .         .         .         .         .       g.70092
 GGGATACCAACTTTACCCTCTACTTTCTACTCACACACAGAGAAGCCTGGTAGTTTCTAC       c.4320
 G  I  P  T  L  P  S  T  F  Y  S  H  T  E  K  P  G  S  F  Y         p.1440

          .         .         .         .         .         .       g.70152
 CAACAGGTCTTGCCACATAGTCATCTACCTGAAGAGGCTTTGGAAGTTTCAGTTGCTCCT       c.4380
 Q  Q  V  L  P  H  S  H  L  P  E  E  A  L  E  V  S  V  A  P         p.1460

          .         .         .         .         .         .       g.70212
 GGACCAGTTGACCAGACGATTGGCACACCAACTGTAACCTCCCCTTCCAGCTCATTTGGA       c.4440
 G  P  V  D  Q  T  I  G  T  P  T  V  T  S  P  S  S  S  F  G         p.1480

          .         .         .         .         .         .       g.70272
 GAGAAGCCCATTGTTATCTACAAACAGGCCTTTCCAGAGGGTCATCTACCTGAAGAGTCT       c.4500
 E  K  P  I  V  I  Y  K  Q  A  F  P  E  G  H  L  P  E  E  S         p.1500

          .         .         .         .         .         .       g.70332
 CTGAAAGTTTCAGTTGCTCCTGGACCAGTTGGCCAGACAACTGGCGCACCAACTATAACC       c.4560
 L  K  V  S  V  A  P  G  P  V  G  Q  T  T  G  A  P  T  I  T         p.1520

          .         .         .         .         .         .       g.70392
 TCTCCTTCCTACTCACAACATAGAGCAAAGTCTGGCAGTTTCTACCAACTGGCATTGCTA       c.4620
 S  P  S  Y  S  Q  H  R  A  K  S  G  S  F  Y  Q  L  A  L  L         p.1540

          .         .         .         .         .         .       g.70452
 GGTAGTCAAATACCTGAAGAGGCTCTCAGAGTTTCTTCTGCTCCTGGACCAGCTGACCAG       c.4680
 G  S  Q  I  P  E  E  A  L  R  V  S  S  A  P  G  P  A  D  Q         p.1560

          .         .         .         .         .         .       g.70512
 ACAACTGGCATACCAACCATAACCTCTACTTCCTACTCATTTGGAGAGAAGCCGATTGTT       c.4740
 T  T  G  I  P  T  I  T  S  T  S  Y  S  F  G  E  K  P  I  V         p.1580

          .         .         .         .         .         .       g.70572
 AACTACAAACAGGCCTTTCCAGATGGTCATCTACCTGAAGAGGCTCTGAAAGTTTCCATT       c.4800
 N  Y  K  Q  A  F  P  D  G  H  L  P  E  E  A  L  K  V  S  I         p.1600

          .         .         .         .         .         .       g.70632
 GTTTCTGGACCTACTGAAAAAAAGACTGACATACCAGCAGGACCTTTAGGTTCCAGTGCA       c.4860
 V  S  G  P  T  E  K  K  T  D  I  P  A  G  P  L  G  S  S  A         p.1620

          .         .         .         .         .         .       g.70692
 CTTGGAGAGAAGCCCATTACTTTCTACCGGCAGGCTCTGCTAGACAGTCCTCTAAATAAA       c.4920
 L  G  E  K  P  I  T  F  Y  R  Q  A  L  L  D  S  P  L  N  K         p.1640

          .         .         .         .         .         .       g.70752
 GAGGTTGTGAAAGTTTCAGCTGCTCCTGGACCAGCTGACCAGAAGACTGAGACATTACCA       c.4980
 E  V  V  K  V  S  A  A  P  G  P  A  D  Q  K  T  E  T  L  P         p.1660

          .         .         .         .         .         .       g.70812
 GTACATTCTACTAGCTACTCAAATAGGGGGAAGCCTGTCATTTTCTACCAGCAGACCCTA       c.5040
 V  H  S  T  S  Y  S  N  R  G  K  P  V  I  F  Y  Q  Q  T  L         p.1680

          .         .         .         .         .         .       g.70872
 TCAGACAGTCATTTACCTGAAGAAGCTCTGAAAGTTCCACCTGTTCCTGGACCAGATGCC       c.5100
 S  D  S  H  L  P  E  E  A  L  K  V  P  P  V  P  G  P  D  A         p.1700

          .         .         .         .         .         .       g.70932
 CAGAAGACTGAGACACCATCAGTATCCTCTAGTTTATACTCATATAGAGAGAAGCCCATT       c.5160
 Q  K  T  E  T  P  S  V  S  S  S  L  Y  S  Y  R  E  K  P  I         p.1720

          .         .         .         .         .         .       g.70992
 GTCTTCTACCAACAGGCCCTGCCAGACAGTGAGCTAACTCAAGAAGCTCTGAAAGTTTCA       c.5220
 V  F  Y  Q  Q  A  L  P  D  S  E  L  T  Q  E  A  L  K  V  S         p.1740

          .         .         .         .         .         .       g.71052
 GCTGTTCCTCAACCAGCTGACCAGAAGACTGGGTTATCTACTGTAACTTCCTCTTTCTAT       c.5280
 A  V  P  Q  P  A  D  Q  K  T  G  L  S  T  V  T  S  S  F  Y         p.1760

          .         .         .         .         .         .       g.71112
 TCACATACAGAGAAGCCTAATATTTCTTACCAGCAAGAGTTGCCAGATAGTCATCTAACT       c.5340
 S  H  T  E  K  P  N  I  S  Y  Q  Q  E  L  P  D  S  H  L  T         p.1780

          .         .         .         .         .         .       g.71172
 GAAGAGGCTCTGAAAGTTTCAAATGTTCCTGGACCAGCTGACCAGAAGACTGGGGTATCA       c.5400
 E  E  A  L  K  V  S  N  V  P  G  P  A  D  Q  K  T  G  V  S         p.1800

          .         .         .         .         .         .       g.71232
 ACAGTAACCTCTACTTCCTACTCACACAGAGAGAAGCCCATTGTTTCCTACCAGCGAGAG       c.5460
 T  V  T  S  T  S  Y  S  H  R  E  K  P  I  V  S  Y  Q  R  E         p.1820

          .         .         .         .         .         .       g.71292
 TTGCCGCATTTTACTGAAGCAGGTTTGAAAATTTTAAGAGTTCCTGGACCAGCTGACCAG       c.5520
 L  P  H  F  T  E  A  G  L  K  I  L  R  V  P  G  P  A  D  Q         p.1840

          .         .         .         .         .         .       g.71352
 AAGACTGGAATAAACATCCTGCCCTCTAATTCCTACCCACAGAGAGAGCACTCTGTCATT       c.5580
 K  T  G  I  N  I  L  P  S  N  S  Y  P  Q  R  E  H  S  V  I         p.1860

          .         .         .         .         .         .       g.71412
 TCTTATGAGCAGGAGTTGCCAGATCTTACTGAAGTAACTTTGAAAGCAATAGGGGTTCCT       c.5640
 S  Y  E  Q  E  L  P  D  L  T  E  V  T  L  K  A  I  G  V  P         p.1880

          .         .         .         .         .         .       g.71472
 GGGCCTGCTGACCAGAAGACTGGGATACAAATAGCATCCTCTAGTTCCTACTCAAATAGA       c.5700
 G  P  A  D  Q  K  T  G  I  Q  I  A  S  S  S  S  Y  S  N  R         p.1900

          .         .         .         .         .         .       g.71532
 GAGAAGGCCAGTATTTTTCATCAGCAGGAGTTGCCAGATGTTACTGAAGAAGCTTTAAAT       c.5760
 E  K  A  S  I  F  H  Q  Q  E  L  P  D  V  T  E  E  A  L  N         p.1920

          .         .         .         .         .         .       g.71592
 GTTTTTGTTGTTCCTGGACAAGGTGACCGGAAGACTGAGATACCAACAGTACCTTTAAGT       c.5820
 V  F  V  V  P  G  Q  G  D  R  K  T  E  I  P  T  V  P  L  S         p.1940

          .         .         .         .         .         .       g.71652
 TACTACTCACGTAGAGAGAAGCCCAGTGTTATCTCTCAACAGGAGTTGCCAGACAGTCAT       c.5880
 Y  Y  S  R  R  E  K  P  S  V  I  S  Q  Q  E  L  P  D  S  H         p.1960

          .         .         .         .         .         .       g.71712
 CTCACAGAAGAGGCTCTGAAAGTTTCACCTGTTTCTATACCAGCAGAGCAGAAGACTGGG       c.5940
 L  T  E  E  A  L  K  V  S  P  V  S  I  P  A  E  Q  K  T  G         p.1980

          .         .         .         .         .         .       g.71772
 ATACCAATAGGACTGTCTAGTTCCTACTCACATTCACATAAAGAGAAACTCAAGATTTCA       c.6000
 I  P  I  G  L  S  S  S  Y  S  H  S  H  K  E  K  L  K  I  S         p.2000

          .         .         .         .         .         .       g.71832
 ACTGTGCATATACCAGATGACCAGAAAACTGAGTTTCCAGCAGCTACCCTTAGTTCCTAC       c.6060
 T  V  H  I  P  D  D  Q  K  T  E  F  P  A  A  T  L  S  S  Y         p.2020

          .         .         .         .         .         .       g.71892
 TCACAAATAGAGAAGCCCAAGATTTCAACTGTGATTGGACCAAATGACCAGAAGACTCCA       c.6120
 S  Q  I  E  K  P  K  I  S  T  V  I  G  P  N  D  Q  K  T  P         p.2040

          .         .         .         .         .         .       g.71952
 TCCCAGACAGCTTTTCATAGTTCCTATTCTCAAACAGTAAAGCCCAATATTTTATTTCAA       c.6180
 S  Q  T  A  F  H  S  S  Y  S  Q  T  V  K  P  N  I  L  F  Q         p.2060

          .         .         .         .         .         .       g.72012
 CAGCAGTTGCCAGATAGAGATCAAAGTAAAGGTATTCTAAAGATTTCAGCTGTCCCTGAA       c.6240
 Q  Q  L  P  D  R  D  Q  S  K  G  I  L  K  I  S  A  V  P  E         p.2080

          .         .         .         .         .         .       g.72072
 CTAACTGATGTGAATACTGGAAAACCAGTATCTCTCTCTAGTTCTTATTTTCACAGAGAG       c.6300
 L  T  D  V  N  T  G  K  P  V  S  L  S  S  S  Y  F  H  R  E         p.2100

          .         .         .         .         .         .       g.72132
 AAATCGAATATTTTCAGTCCACAGGAATTGCCAGGTAGTCATGTAACTGAAGATGTGCTG       c.6360
 K  S  N  I  F  S  P  Q  E  L  P  G  S  H  V  T  E  D  V  L         p.2120

          .         .         .         .         .         .       g.72192
 AAGGTTTCAACAATTCCTGGACCAGCTGGCCAGAAAACAGTATTACCAACAGCTCTTCCT       c.6420
 K  V  S  T  I  P  G  P  A  G  Q  K  T  V  L  P  T  A  L  P         p.2140

          .         .         .         .         .         .       g.72252
 AGTTCCTTTTCACATCGAGAGAAACCAGATATTTTCTATCAAAAGGATTTGCCAGATAGA       c.6480
 S  S  F  S  H  R  E  K  P  D  I  F  Y  Q  K  D  L  P  D  R         p.2160

          .         .         .         .         .         .       g.72312
 CATCTAACTGAAGATGCTCTAAAGATCTCAAGTGCTCTTGGGCAAGCTGATCAAATTACC       c.6540
 H  L  T  E  D  A  L  K  I  S  S  A  L  G  Q  A  D  Q  I  T         p.2180

          .         .         .         .         .         .       g.72372
 GGATTACAAACAGTTCCCTCTGGTACTTACTCACATGGTGAGAATCACAAGCTTGTTTCA       c.6600
 G  L  Q  T  V  P  S  G  T  Y  S  H  G  E  N  H  K  L  V  S         p.2200

          .         .         .         .         .         .       g.72432
 GAACATGTCCAAAGGCTAATAGATAATTTGAATTCTTCTGACTCCAGTGTTAGCTCAAAT       c.6660
 E  H  V  Q  R  L  I  D  N  L  N  S  S  D  S  S  V  S  S  N         p.2220

          .         .         .         .         .         .       g.72492
 AATGTGCTTTTAAATTCTCAGGCTGATGACAGAGTTGTAATAAATAAACCAGAATCTGCA       c.6720
 N  V  L  L  N  S  Q  A  D  D  R  V  V  I  N  K  P  E  S  A         p.2240

          .         .         .         .         .         .       g.72552
 GGTTTTAGAGATGTTGGCTCTGAAGAAATCCAGGATGCAGAAAATAGTGCTAAAACTCTT       c.6780
 G  F  R  D  V  G  S  E  E  I  Q  D  A  E  N  S  A  K  T  L         p.2260

          .         .         .         .         .         .       g.72612
 AAGGAAATTCGGACACTTTTGATGGAGGCAGAAAATATGGCACTGAAACGATGCAATTTT       c.6840
 K  E  I  R  T  L  L  M  E  A  E  N  M  A  L  K  R  C  N  F         p.2280

          .         .         .         .         .         .       g.72672
 CCTGCTCCCCTTGCCCGTTTCAGAGATATTAGTGATATTTCATTTATACAATCTAAGAAG       c.6900
 P  A  P  L  A  R  F  R  D  I  S  D  I  S  F  I  Q  S  K  K         p.2300

          .         .         .         .         .         .       g.72732
 GTGGTTTGCTTCAAAGAACCCTCTTCCACGGGTGTATCTAATGGTGATTTGCTTCACAGA       c.6960
 V  V  C  F  K  E  P  S  S  T  G  V  S  N  G  D  L  L  H  R         p.2320

          .         .         .         .         .         .       g.72792
 CAGCCATTCACAGAGGAAAGCCCAAGCAGCAGGTGCATACAGAAGGATATTGGCACACAG       c.7020
 Q  P  F  T  E  E  S  P  S  S  R  C  I  Q  K  D  I  G  T  Q         p.2340

          .         .         .         .         .         .       g.72852
 ACGAATTTGAAATGCCGGAGAGGCATTGAAAATTGGGAGTTTATTAGTTCAACTACAGTT       c.7080
 T  N  L  K  C  R  R  G  I  E  N  W  E  F  I  S  S  T  T  V         p.2360

          .         .         .         .         .         .       g.72912
 AGAAGTCCTCTACAGGAAGCAGAGAGCAAAGTCAGTATGGCATTAGAAGAAACTCTTAGG       c.7140
 R  S  P  L  Q  E  A  E  S  K  V  S  M  A  L  E  E  T  L  R         p.2380

          .         .         .         .         .         .       g.72972
 CAATATCAAGCAGCCAAATCTGTAATGAGGTCTGAACCTGAAGGGTGTAGTGGAACCATT       c.7200
 Q  Y  Q  A  A  K  S  V  M  R  S  E  P  E  G  C  S  G  T  I         p.2400

          .         .         .         .         .         .       g.73032
 GGGAATAAAATTATTATCCCTATGATGACTGTCATAAAAAGTGATTCAAGTAGTGATGCC       c.7260
 G  N  K  I  I  I  P  M  M  T  V  I  K  S  D  S  S  S  D  A         p.2420

          .         .         .         .         .         .       g.73092
 AGTGATGGAAATGGTTCCTGCTCGTGGGACAGTAATTTACCAGAGTCTTTGGAATCAGTT       c.7320
 S  D  G  N  G  S  C  S  W  D  S  N  L  P  E  S  L  E  S  V         p.2440

          .         .         .         .         .         .       g.73152
 TCTGATGTTCTTCTAAACTTCTTTCCATATGTTTCACCCAAGACAAGTATAACAGATAGC       c.7380
 S  D  V  L  L  N  F  F  P  Y  V  S  P  K  T  S  I  T  D  S         p.2460

          .         .         .         .         .         .       g.73212
 AGGGAGGAAGAGGGTGTGTCAGAGAGTGAGGATGGTGGTGGTAGCAGTGTAGATTCACTG       c.7440
 R  E  E  E  G  V  S  E  S  E  D  G  G  G  S  S  V  D  S  L         p.2480

          .         .         .         .         .         .       g.73272
 GCTGCACATGTGAAAAACCTTCTGCAATGTGAATCCTCACTGAATCATGCTAAAGAAATA       c.7500
 A  A  H  V  K  N  L  L  Q  C  E  S  S  L  N  H  A  K  E  I         p.2500

          .         .         .         .    | 09    .         .    g.74426
 CTCAGAAATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATG | CCTGGAATATGAAGTTC    c.7560
 L  R  N  A  E  E  E  E  S  R  V  R  A  H  A |   W  N  M  K  F      p.2520

          .         .         .         .         .         .       g.74486
 AATTTAGCACATGATTGTGGATACTCCATTTCAGAATTAAATGAAGATGACAGGAGGAAA       c.7620
 N  L  A  H  D  C  G  Y  S  I  S  E  L  N  E  D  D  R  R  K         p.2540

          .         .         .         .         .        | 10.    g.108884
 GTAGAAGAGATCAAGGCAGAGTTATTTGGTCATGGAAGAACAACTGACTTGTCCAAG | GGT    c.7680
 V  E  E  I  K  A  E  L  F  G  H  G  R  T  T  D  L  S  K   | G      p.2560

          .         .         .         .         .         .       g.108944
 TTACAGAGTCCACGGGGAATGGGATGCAAGCCAGAAGCTGTATGTAGTCACATTATTATT       c.7740
 L  Q  S  P  R  G  M  G  C  K  P  E  A  V  C  S  H  I  I  I         p.2580

          .         .         .         .         .         .       g.109004
 GAGAGCCATGAAAAGGGATGTTTCCGGACTCTAACTTCTGAACATCCACAACTAGATAGA       c.7800
 E  S  H  E  K  G  C  F  R  T  L  T  S  E  H  P  Q  L  D  R         p.2600

          .         .         .         .         .         .       g.109064
 CACCCTTGTGCTTTCAGATCTGCTGGACCCTCAGAAATGACCAGAGGACGGCAGAACCCA       c.7860
 H  P  C  A  F  R  S  A  G  P  S  E  M  T  R  G  R  Q  N  P         p.2620

          .         .         .         .         .         .       g.109124
 TCATCATGCAGAGCCAAGCATGTCAACCTTTCTGCATCCTTAGACCAGAACAACTCCCAT       c.7920
 S  S  C  R  A  K  H  V  N  L  S  A  S  L  D  Q  N  N  S  H         p.2640

          .         .         .         .         .         .       g.109184
 TTCAAAGTTTGGAATTCCTTGCAGTTAAAAAGTCATTCCCCATTTCAGAACTTTATACCT       c.7980
 F  K  V  W  N  S  L  Q  L  K  S  H  S  P  F  Q  N  F  I  P         p.2660

          .         .         .         .         .         .       g.109244
 GATGAATTCAAAATCAGCAAAGGTCTTCGAATGCCATTCGATGAAAAGATGGACCCTTGG       c.8040
 D  E  F  K  I  S  K  G  L  R  M  P  F  D  E  K  M  D  P  W         p.2680

          .         .         .         .         .         .       g.109304
 CTGTCAGAATTAGTAGAACCTGCTTTTGTGCCACCTAAAGAAGTGGATTTTCATTCTTCA       c.8100
 L  S  E  L  V  E  P  A  F  V  P  P  K  E  V  D  F  H  S  S         p.2700

          .         .         .         .         .         .       g.109364
 TCACAAATGCCGTCCCCAGAACCCATGAAAAAGTTTACTACCTCCATCACTTTTTCATCT       c.8160
 S  Q  M  P  S  P  E  P  M  K  K  F  T  T  S  I  T  F  S  S         p.2720

          .         .         .         .         .         .       g.109424
 CACCGACATTCTAAATGCATTTCCAATTCCTCTGTTGTTAAGGTTGGTGTTACTGAAGGT       c.8220
 H  R  H  S  K  C  I  S  N  S  S  V  V  K  V  G  V  T  E  G         p.2740

          .         .         .         .         .         .       g.109484
 AGCCAGTGTACTGGAGCATCTGTGGGGGTATTTAATTCTCATTTCACTGAAGAACAAAAT       c.8280
 S  Q  C  T  G  A  S  V  G  V  F  N  S  H  F  T  E  E  Q  N         p.2760

          .         .         .         .         .         .       g.109544
 CCTCCCAGAGATCTTAAACAGAAAACCTCTTCCCCTTCATCATTTAAAATGCATAGTAAT       c.8340
 P  P  R  D  L  K  Q  K  T  S  S  P  S  S  F  K  M  H  S  N         p.2780

          .         .         .         .         .         .       g.109604
 TCACAAGATAAAGAAGTGACTATTTTAGCAGAAGGTAGAAGGCAAAGCCAAAAATTACCT       c.8400
 S  Q  D  K  E  V  T  I  L  A  E  G  R  R  Q  S  Q  K  L  P         p.2800

          .         .         .         .         .         .       g.109664
 GTTGATTTTGAGCGTTCTTTTCAAGAAGAAAAACCCTTAGAAAGATCAGATTTTACAGGC       c.8460
 V  D  F  E  R  S  F  Q  E  E  K  P  L  E  R  S  D  F  T  G         p.2820

          .         .         .         .         .         .       g.109724
 AGTCATTCTGAGCCCAGTACCAGGGCAAATTGTAGCAATTTCAAGGAAATTCAGATTTCT       c.8520
 S  H  S  E  P  S  T  R  A  N  C  S  N  F  K  E  I  Q  I  S         p.2840

          .         .         .         .         .         .       g.109784
 GATAACCATACCCTTATTAGCATGGGCAGACCAAGTTCCACCCTAGGAGTAAACAGATCG       c.8580
 D  N  H  T  L  I  S  M  G  R  P  S  S  T  L  G  V  N  R  S         p.2860

          .         .         .         .         .         .       g.109844
 AGTTCCAGACTAGGAGTAAAAGAGAAGAATGTAACTATAACTCCAGATCTTCCTTCTTGC       c.8640
 S  S  R  L  G  V  K  E  K  N  V  T  I  T  P  D  L  P  S  C         p.2880

          .         .         .         .         .         .       g.109904
 ATTTTTCTTGAACAACGAGAGCTCTTTGAACAAAGCAAAGCCCCACGTGCAGATGACCAT       c.8700
 I  F  L  E  Q  R  E  L  F  E  Q  S  K  A  P  R  A  D  D  H         p.2900

          .         .         .         .         .         .       g.109964
 GTGAGGAAACACCATTCTCCCTCTCCTCAACATCAGGATTATGTAGCTCCAGACCTTCCT       c.8760
 V  R  K  H  H  S  P  S  P  Q  H  Q  D  Y  V  A  P  D  L  P         p.2920

          .         .         .         .         .         .       g.110024
 TCTTGCATTTTTCTTGAACAACGAGAACTCTTTGAACAGTGCAAAGCCCCATATGTAGAT       c.8820
 S  C  I  F  L  E  Q  R  E  L  F  E  Q  C  K  A  P  Y  V  D         p.2940

          .         .         .         .         .         .       g.110084
 CATCAAATGAGAGAAAACCATTCTCCCCTTCCTCAAGGTCAGGATTCTATAGCTTCAGAC       c.8880
 H  Q  M  R  E  N  H  S  P  L  P  Q  G  Q  D  S  I  A  S  D         p.2960

          .         .         .         .         .         .       g.110144
 CTTCCGTCTCCCATTTCTCTTGAACAATGCCAAAGCAAAGCGCCAGGTGTAGATGACCAA       c.8940
 L  P  S  P  I  S  L  E  Q  C  Q  S  K  A  P  G  V  D  D  Q         p.2980

          .         .         .         .         .         .       g.110204
 ATGAATAAACACCATTTTCCCCTTCCTCAAGGTCAGGATTGTGTAGTGGAAAAGAATAAT       c.9000
 M  N  K  H  H  F  P  L  P  Q  G  Q  D  C  V  V  E  K  N  N         p.3000

          .         .         .         .         .         .       g.110264
 CAACATAAGCCTAAATCACACATTTCTAATATAAATGTTGAAGCCAAGTTCAATACTGTG       c.9060
 Q  H  K  P  K  S  H  I  S  N  I  N  V  E  A  K  F  N  T  V         p.3020

          .         .         .         .         .         .       g.110324
 GTCTCCCAGTCAGCCCCAAATCACTGTACATTAGCAGCATCTGCATCTACTCCTCCTTCA       c.9120
 V  S  Q  S  A  P  N  H  C  T  L  A  A  S  A  S  T  P  P  S         p.3040

          .         .         .         .         .         .       g.110384
 AATAGAAAAGCACTTTCTTGTGTTCATATAACTCTTTGTCCCAAGACTTCTTCCAAGTTG       c.9180
 N  R  K  A  L  S  C  V  H  I  T  L  C  P  K  T  S  S  K  L         p.3060

          .         .         .         .         .         .       g.110444
 GATAGTGGAACTTTAGATGAAAGATTCCATTCATTGGATGCTGCTTCTAAAGCGAGGATG       c.9240
 D  S  G  T  L  D  E  R  F  H  S  L  D  A  A  S  K  A  R  M         p.3080

          .         .         .         .         .         .       g.110504
 AATAGTGAGTTTAACTTTGACTTACATACTGTATCTTCGAGATCACTGGAACCAACCTCC       c.9300
 N  S  E  F  N  F  D  L  H  T  V  S  S  R  S  L  E  P  T  S         p.3100

          .         .         .         .         .         .       g.110564
 AAATTATTGACCAGTAAACCTGTAGCACAGGATCAAGAATCTTTAGGTTTTCTAGGACCT       c.9360
 K  L  L  T  S  K  P  V  A  Q  D  Q  E  S  L  G  F  L  G  P         p.3120

          .         .         .         .         .         .       g.110624
 AAATCTTCACTGGATTTCCAAGTCGTACAGCCTTCTCTTCCAGACAGTAACACTATTACT       c.9420
 K  S  S  L  D  F  Q  V  V  Q  P  S  L  P  D  S  N  T  I  T         p.3140

          .         .         .         .         .         .       g.110684
 CAGGACTTGAAAACCATACCTTCTCAGAATAGCCAGATAGTAACCTCCAGGCAAATACAA       c.9480
 Q  D  L  K  T  I  P  S  Q  N  S  Q  I  V  T  S  R  Q  I  Q         p.3160

          .         .         .         .         .         .       g.110744
 GTGAACATTTCAGATTTCGAAGGACATTCCAATCCAGAGGGGACCCCAGTATTTGCAGAT       c.9540
 V  N  I  S  D  F  E  G  H  S  N  P  E  G  T  P  V  F  A  D         p.3180

    | 11     .         .         .         .         .         .    g.139080
 CG | ATTACCAGAGAAGATGAAGACCCCACTTTCTGCTTTCTCTGAAAAATTGTCATCTGAT    c.9600
 R  |  L  P  E  K  M  K  T  P  L  S  A  F  S  E  K  L  S  S  D      p.3200

          .         .         .         .         .         .       g.139140
 GCAGTCACTCAGATAACAACAGAAAGTCCAGAAAAGACCCTATTTTCATCTGAGATTTTT       c.9660
 A  V  T  Q  I  T  T  E  S  P  E  K  T  L  F  S  S  E  I  F         p.3220

          .         .         .         .         .         .       g.139200
 ATTAATGCTGAAGATCGTGGACATGAAATTATAGAGCCTGGTAACCAGAAGCTACGCAAA       c.9720
 I  N  A  E  D  R  G  H  E  I  I  E  P  G  N  Q  K  L  R  K         p.3240

          .         .         .         .         .         .       g.139260
 GCTCCTGTCAAGTTTGCCTCATCATCTTCAGTCCAACAGGTTACTTTTTCTCGCGGCACA       c.9780
 A  P  V  K  F  A  S  S  S  S  V  Q  Q  V  T  F  S  R  G  T         p.3260

      | 12   .         .         .         .         .         .    g.154127
 GATG | GCCAGCCTTTATTATTGCCATATAAGCCTTCTGGTAGTACCAAGATGTATTATGTT    c.9840
 D  G |   Q  P  L  L  L  P  Y  K  P  S  G  S  T  K  M  Y  Y  V      p.3280

          .         .         .         .         .         .       g.154187
 CCACAATTAAGACAAATTCCTCCATCTCCGGATTCCAAATCAGATACCACCGTTGAAAGC       c.9900
 P  Q  L  R  Q  I  P  P  S  P  D  S  K  S  D  T  T  V  E  S         p.3300

          . | 13       .         .         .         .         .    g.169564
 TCCCATTCAG | GATCCAATGATGCCATTGCTCCAGACTTCCCAGCTCAGGTGCTAGGCACA    c.9960
 S  H  S  G |   S  N  D  A  I  A  P  D  F  P  A  Q  V  L  G  T      p.3320

          .         .         .         .         .         .       g.169624
 AGAGATGATGACCTCTCAGCCACTGTTAACATTAAACATAAAGAAGGAATCTACAGTAAG       c.10020
 R  D  D  D  L  S  A  T  V  N  I  K  H  K  E  G  I  Y  S  K         p.3340

          .         .         .         .         .         .       g.169684
 AGGGTAGTGACTAAGGCATCCTTGCCAGTGGGAGAAAAACCCTTGCAGAATGAAAATGCA       c.10080
 R  V  V  T  K  A  S  L  P  V  G  E  K  P  L  Q  N  E  N  A         p.3360

   | 14      .         .         .         .         .         .    g.176526
 G | ATGCCTCAGTTCAAGTGCTAATCACTGGGGATGAGAACCTCTCAGACAAAAAACAGCAA    c.10140
 D |   A  S  V  Q  V  L  I  T  G  D  E  N  L  S  D  K  K  Q  Q      p.3380

          .         .         .         .         .         .       g.176586
 GAGATTCACAGTACAAGGGCAGTGACTGAGGCTGCCCAGGCTAAAGAAAAAGAATCTTTG       c.10200
 E  I  H  S  T  R  A  V  T  E  A  A  Q  A  K  E  K  E  S  L         p.3400

          .       | 15 .         .         .         .         .    g.178263
 CAGAAAGATACTGCAG | ATTCCAGTGCTGCTGCTGCTGCAGAGCACTCAGCTCAAGTAGGA    c.10260
 Q  K  D  T  A  D |   S  S  A  A  A  A  A  E  H  S  A  Q  V  G      p.3420

          .         .         .         .         .         .       g.178323
 GACCCAGAAATGAAGAACTTGCCAGACACTAAAGCCATTACACAGAAAGAGGAGATCCAT       c.10320
 D  P  E  M  K  N  L  P  D  T  K  A  I  T  Q  K  E  E  I  H         p.3440

          .         .         .         .         .         .       g.178383
 AGGAAGAAGACAGTTCCCGAGGAAGCCTGGCCAAACAATAAAGAATCCCTACAGATCAAT       c.10380
 R  K  K  T  V  P  E  E  A  W  P  N  N  K  E  S  L  Q  I  N         p.3460

         | 16.         .         .         .         .         .    g.191562
 ATTGAAG | AGTCCGAATGTCATTCAGAATTTGAAAATACTACCCGTTCTGTCTTCAGGTCA    c.10440
 I  E  E |   S  E  C  H  S  E  F  E  N  T  T  R  S  V  F  R  S      p.3480

          .         .         .         .         .         .       g.191622
 GCAAAGTTTTACATTCATCATCCCGTACACCTACCAAGTGATCAAGATATTTGCCATGAA       c.10500
 A  K  F  Y  I  H  H  P  V  H  L  P  S  D  Q  D  I  C  H  E         p.3500

          .         .         .         .         .         .       g.191682
 TCTTTGGGAAAGAGTGTTTTCATGAGACATTCTTGGAAAGATTTCTTTCAGCATCATCCA       c.10560
 S  L  G  K  S  V  F  M  R  H  S  W  K  D  F  F  Q  H  H  P         p.3520

          .         .         .         .         .         .       g.191742
 GACAAACATAGAGAACACATGTGTCTTCCTCTTCCTTATCAAAACATGGACAAGACTAAG       c.10620
 D  K  H  R  E  H  M  C  L  P  L  P  Y  Q  N  M  D  K  T  K         p.3540

          .         .         .         .         .         .       g.191802
 ACAGATTATACCAGAATAAAGAGCCTCAGCATCAATGTGAATTTGGGAAACAAAGAAGTG       c.10680
 T  D  Y  T  R  I  K  S  L  S  I  N  V  N  L  G  N  K  E  V         p.3560

          .         .         .         .         .         .       g.191862
 ATGGATACTACTAAAAGTCAAGTTAGAGATTATCCAAAACATAATGGACAAATTAGTGAT       c.10740
 M  D  T  T  K  S  Q  V  R  D  Y  P  K  H  N  G  Q  I  S  D         p.3580

          .         .         .         .         .         .       g.191922
 CCACAAAGGGATCAGAAGGTCACCCCAGAGCAAACAACTCAGCACACTGTGAGTTTGAAT       c.10800
 P  Q  R  D  Q  K  V  T  P  E  Q  T  T  Q  H  T  V  S  L  N         p.3600

          .         .         .         .         .         .       g.191982
 GAACTGTGGAACAAGTATCGGGAGCGACAGAGGCAACAGAGACAGCCTGAGTTGGGTGAC       c.10860
 E  L  W  N  K  Y  R  E  R  Q  R  Q  Q  R  Q  P  E  L  G  D         p.3620

          .         .         .         .         .         .       g.192042
 AGGAAAGAACTGTCCTTGGTGGACCGACTTGATCGTTTGGCTAAAATTCTTCAGAATCCA       c.10920
 R  K  E  L  S  L  V  D  R  L  D  R  L  A  K  I  L  Q  N  P         p.3640

          .         .         .         .         .         .       g.192102
 ATCACACATTCTCTCCAGGTCTCAGAAAGTACACATGATGATAGCAGAGGGGAACGAAGT       c.10980
 I  T  H  S  L  Q  V  S  E  S  T  H  D  D  S  R  G  E  R  S         p.3660

          .         .         .         .         .         .       g.192162
 GTGAAGGAATGGAGTGGTAGACAACAGCAGAGAAATAAGCTTCAGAAAAAGAAGCGGTTT       c.11040
 V  K  E  W  S  G  R  Q  Q  Q  R  N  K  L  Q  K  K  K  R  F         p.3680

          .         .         .         .         .         .       g.192222
 AAAAGCCTAGAGAAAAGCCATAAAAATACAGGCGAGCTTAAAAAAAGCAAGGTGCTTTCT       c.11100
 K  S  L  E  K  S  H  K  N  T  G  E  L  K  K  S  K  V  L  S         p.3700

          .         .         .         .         .         .       g.192282
 CATCATCGAGCTGGGAGGTCTAATCAAATTAAAATTGAACAGATTAAATTTGATAAATAT       c.11160
 H  H  R  A  G  R  S  N  Q  I  K  I  E  Q  I  K  F  D  K  Y         p.3720

          .         .         .         .         .         .       g.192342
 ATTCTGAGTAAACAGCCAGGTTTTAATTATATAAGCAACACTTCTTCGGATTGTCGGCCC       c.11220
 I  L  S  K  Q  P  G  F  N  Y  I  S  N  T  S  S  D  C  R  P         p.3740

          .         .         .         .         .         .       g.192402
 TCAGAGGAGAGTGAGCTGCTCACAGATACTACCACCAACATCCTTTCCGGCACCACTTCT       c.11280
 S  E  E  S  E  L  L  T  D  T  T  T  N  I  L  S  G  T  T  S         p.3760

          .         .         .         .         .         .       g.192462
 ACTGTCGAATCAGATATATTGACCCAAACAGATAGAGAGGTGGCTCTGCACGAAAGGAGT       c.11340
 T  V  E  S  D  I  L  T  Q  T  D  R  E  V  A  L  H  E  R  S         p.3780

          .         .         .         .         .         .       g.192522
 AGCTCTGTTTCCACTATTGACACTGCCCGGCTGATTCAAGCTTTTGGCCATGAAAGAGTA       c.11400
 S  S  V  S  T  I  D  T  A  R  L  I  Q  A  F  G  H  E  R  V         p.3800

          .         .         .         .         .         .       g.192582
 TGCTTGTCACCCAGACGAATTAAATTATATAGCAGCATCACCAACCAACAGAGGAGATAC       c.11460
 C  L  S  P  R  R  I  K  L  Y  S  S  I  T  N  Q  Q  R  R  Y         p.3820

          .         .         .         .         .         .       g.192642
 CTTGAGAAGCGGAGCAAACACAGCAAGAAAGTGCTGAATACAGGTCATCCCCTAGTGACT       c.11520
 L  E  K  R  S  K  H  S  K  K  V  L  N  T  G  H  P  L  V  T         p.3840

          .         .         . | 17       .         .         .    g.218678
 TCTGAGCACACCAGAAGGAGACACATCCAG | GTAGCAAACCATGTGATTTCTTCTGACTCT    c.11580
 S  E  H  T  R  R  R  H  I  Q   | V  A  N  H  V  I  S  S  D  S      p.3860

          .         .         .         .         .         .       g.218738
 ATTTCCTCTTCTGCCAGTAGTTTCCTGAGCTCAAACTCTACTTTTTGCAACAAGCAGAAT       c.11640
 I  S  S  S  A  S  S  F  L  S  S  N  S  T  F  C  N  K  Q  N         p.3880

          .         .         .  | 18      .         .         .    g.219954
 GTACACATGTTAAACAAGGGCATACAAGCAG | GTAACTTGGAGATTGTGAACGGTGCCAAA    c.11700
 V  H  M  L  N  K  G  I  Q  A  G |   N  L  E  I  V  N  G  A  K      p.3900

          .         .         .         .         .         .       g.220014
 AAACACACTCGAGATGTTGGGATAACTTTCCCAACTCCAAGTTCCAGCGAGGCTAAATTG       c.11760
 K  H  T  R  D  V  G  I  T  F  P  T  P  S  S  S  E  A  K  L         p.3920

          .         .         .         .         .         .       g.220074
 GAAGAGAACAGTGATGTGACTTCTTGGTCAGAAGAAAAACGTGAAGAGAAAATGCTCTTT       c.11820
 E  E  N  S  D  V  T  S  W  S  E  E  K  R  E  E  K  M  L  F         p.3940

          .         .         .         .         .      | 19  .    g.220447
 ACCGGTTATCCTGAGGACAGAAAGTTAAAAAAGAACAAGAAGAATTCCCATGAAG | GAGTT    c.11880
 T  G  Y  P  E  D  R  K  L  K  K  N  K  K  N  S  H  E  G |   V      p.3960

          .         .         .         .         .         .       g.220507
 TCCTGGTTTGTTCCTGTGGAAAATGTGGAGTCTAGATCAAAGAAGGAAAACGTGCCTAAC       c.11940
 S  W  F  V  P  V  E  N  V  E  S  R  S  K  K  E  N  V  P  N         p.3980

          .         .         .         .         .         .       g.220567
 ACTTGTGGCCCTGGCATCTCCTGGTTTGAACCAATAACCAAGACCAGACCCTGGAGGGAG       c.12000
 T  C  G  P  G  I  S  W  F  E  P  I  T  K  T  R  P  W  R  E         p.4000

          .         .         .         .         .         .       g.220627
 CCACTGCGGGAGCAGAACTGTCAGGGGCAGCACCTGGACGGTCGGGGCTACCTGGCAGGC       c.12060
 P  L  R  E  Q  N  C  Q  G  Q  H  L  D  G  R  G  Y  L  A  G         p.4020

          .         .         .         .         .        | 20.    g.221435
 CCAGGCAGAGAGGCTGGCAGAGACCTACTGAGGCCATTTGTGAGAGCAACCCTTCAG | GAA    c.12120
 P  G  R  E  A  G  R  D  L  L  R  P  F  V  R  A  T  L  Q   | E      p.4040

          .         .         .         .         .         .       g.221495
 TCGCTTCAGTTTCACAGACCTGACTTCATCTCCCGCTCTGGGGAGCGGATAAAGCGCCTG       c.12180
 S  L  Q  F  H  R  P  D  F  I  S  R  S  G  E  R  I  K  R  L         p.4060

          .         .         .         .         .         .       g.221555
 AAGTTAATAGTCCAGGAGAGGAAGCTGCAGAGCATGTTACAGACCGAGCGGGATGCACTA       c.12240
 K  L  I  V  Q  E  R  K  L  Q  S  M  L  Q  T  E  R  D  A  L         p.4080

          .         .         .         .         .         .       g.221615
 TTCAACATTGACAGGGAACGGCAGGGCCACCAGAATCGCATGTGCCCGCTGCCCAAGAGA       c.12300
 F  N  I  D  R  E  R  Q  G  H  Q  N  R  M  C  P  L  P  K  R         p.4100

   | 21      .         .         .         .         .         .    g.222547
 G | TCTTCCTGGCTATCCAGAAGAACAAGCCTATCAGCAAGAAGGAAATGATTCAGAGGTCC    c.12360
 V |   F  L  A  I  Q  K  N  K  P  I  S  K  K  E  M  I  Q  R  S      p.4120

       | 22  .         .         .         .         .         .    g.227777
 AAACG | GATTTATGAGCAGCTTCCAGAAGTACAGAAAAAGAGAGAAGAAGAGAAGAGAAAA    c.12420
 K  R  |  I  Y  E  Q  L  P  E  V  Q  K  K  R  E  E  E  K  R  K      p.4140

          .         .         .         .      | 23  .         .    g.228830
 TCAGAATATAAGTCATACCGGCTGCGAGCCCAGCTATATAAAAAG | AGAGTGACCAATCAA    c.12480
 S  E  Y  K  S  Y  R  L  R  A  Q  L  Y  K  K   | R  V  T  N  Q      p.4160

          .         .         .                                     g.228860
 CTTCTGGGGAGAAAAGTTCCCTGGGACTGA                                     c.12510
 L  L  G  R  K  V  P  W  D  X                                       p.4169

          .         .         .         .         .         .       g.228920
 cacaagtttattttcctcagagccttggaattctattttatgaacctagagaagcagaat       c.*60

          .         .         .         .         .         .       g.228980
 ccttacttttgtgagtctggttgaataaagcttattctttgtccatgtgtattttagaaa       c.*120

          .         .         .         .         .         .       g.229040
 tagtaacttctaaagagtctggaacaaagtggtgattaaaattcctaatggtttgggagc       c.*180

          .         .         .         .         .         .       g.229100
 aatactttctgcatagtggccttgtccaatggcctgtgtgttacaatgatatgatcattt       c.*240

          .         .         .         .         .         .       g.229160
 ctcaagaataagtccctttttgtatgtgtttttatacttttagaaaataaaaactttaga       c.*300

                                                                    g.229167
 ttaactc                                                            c.*307

 (downstream sequence)
Legend:
Nucleotide numbering (following the rules of the HGVS for a 'Coding DNA Reference Sequence') is indicated at the right of the sequence, counting the A of the ATG translation initiating Methionine as 1. Every 10th nucleotide is indicated by a "." above the sequence. The Alstrom syndrome 1 protein sequence is shown below the coding DNA sequence, with numbering indicated at the right starting with 1 for the translation initiating Methionine. Every 10th amino acid is shown in bold. The position of introns is indicated by a vertical line, splitting the two exons. The start of the first exon (transcription initiation site) is indicated by a '\', the end of the last exon (poly-A addition site) by a '/'. The exon number is indicated above the first nucleotide(s) of the exon. To aid the description of frame shift variants, all stop codons in the +1 frame are shown in bold while all stop codons in the +2 frame are underlined.

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