(used for variant description)
(last modified August 24, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_005898.4 in the CAPRIN1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000011.9, covering CAPRIN1 transcript NM_005898.4.
(upstream sequence)
g.5009
cagagggct c.-181
. . . . . . g.5069
gctggctggctaagtccctcccgctcccggctctcgcctcactaggagcggctctcggtg c.-121
. . . . . . g.5129
cagcgggacagggcgaagcggcctgcgcccacggagcgcgcgacactgcccggaagggac c.-61
. . . . . . g.5189
caccacccttgccccctcagctgcccactcgtgatttccagcggcctccgcgcgcgcacg c.-1
| 02 . . . . . . g.5798
| ATGCCCTCGGCCACCAGCCACAGCGGGAGCGGCAGCAAGTCGTCCGGACCGCCACCGCCG c.60
| M P S A T S H S G S G S K S S G P P P P p.20
. . . . . . g.5858
TCGGGTTCCTCCGGGAGTGAGGCGGCCGCGGGAGCCGGGGCCGCCGCGCCGGCTTCTCAG c.120
S G S S G S E A A A G A G A A A P A S Q p.40
. . . . . . g.5918
CACCCCGCAACCGGCACCGGCGCTGTCCAGACCGAGGCCATGAAGCAGATTCTCGGGGTG c.180
H P A T G T G A V Q T E A M K Q I L G V p.60
. . . | 03 . . . g.25067
ATCGACAAGAAACTTCGGAACCTGGAGAAGAAAAAG | GGTAAGCTTGATGATTACCAGGAA c.240
I D K K L R N L E K K K | G K L D D Y Q E p.80
. . . | 04 . . g.25239
CGAATGAACAAAGGGGAAAGGCTTAATCAAGATCAGCTG | GATGCCGTTTCTAAGTACCAG c.300
R M N K G E R L N Q D Q L | D A V S K Y Q p.100
. . . . . . g.25299
GAAGTCACAAATAATTTGGAGTTTGCAAAAGAATTACAGAGGAGTTTCATGGCACTAAGT c.360
E V T N N L E F A K E L Q R S F M A L S p.120
| 05 . . . . . . g.29607
CAAGAT | ATTCAGAAAACAATAAAGAAGACAGCACGTCGGGAGCAGCTTATGAGAGAAGAA c.420
Q D | I Q K T I K K T A R R E Q L M R E E p.140
. . . . . . g.29667
GCTGAACAGAAACGTTTAAAAACTGTACTTGAGCTACAGTATGTTTTGGACAAATTGGGA c.480
A E Q K R L K T V L E L Q Y V L D K L G p.160
. . . . . . g.29727
GATGATGAAGTGCGGACTGACCTGAAACAAGGTTTGAATGGAGTGCCAATATTGTCCGAA c.540
D D E V R T D L K Q G L N G V P I L S E p.180
. . . . . . g.29787
GAGGAGTTGTCATTGTTGGATGAATTCTATAAGCTAGTAGACCCTGAACGGGACATGAGC c.600
E E L S L L D E F Y K L V D P E R D M S p.200
| 06 . . . . . . g.29932
TTGAG | GTTGAATGAACAGTATGAACATGCCTCCATTCACCTGTGGGACCTGCTGGAAGGG c.660
L R | L N E Q Y E H A S I H L W D L L E G p.220
. . | 07 . . . g.32977
AAGGAAAAACCTGTATGTGGAACCACCT | ATAAAGTTCTAAAGGAAATTGTTGAGCGTGTT c.720
K E K P V C G T T Y | K V L K E I V E R V p.240
. . . . . . g.33037
TTTCAGTCAAACTACTTTGACAGCACCCACAACCACCAGAATGGGCTGTGTGAGGAAGAA c.780
F Q S N Y F D S T H N H Q N G L C E E E p.260
. . . . | 08 . . g.36156
GAGGCAGCCTCAGCACCTGCAGTTGAAGACCAGGTACCTGAAGCTG | AACCTGAGCCAGCA c.840
E A A S A P A V E D Q V P E A E | P E P A p.280
. . . | 09 . . g.36293
GAAGAGTACACTGAGCAAAGTGAAGTTGAATCAACAGAG | TATGTAAATAGACAGTTCATG c.900
E E Y T E Q S E V E S T E | Y V N R Q F M p.300
. . . . . . g.36353
GCAGAAACACAGTTCACCAGTGGTGAAAAGGAGCAGGTAGATGAGTGGACAGTTGAAACG c.960
A E T Q F T S G E K E Q V D E W T V E T p.320
| 10 . . . . . . g.39435
GTTGAG | GTGGTAAATTCACTCCAGCAGCAACCTCAGGCTGCATCCCCTTCAGTACCAGAG c.1020
V E | V V N S L Q Q Q P Q A A S P S V P E p.340
. . . . . . g.39495
CCCCACTCTTTGACTCCAGTGGCTCAGGCAGATCCCCTTGTGAGAAGACAGCGAGTACAA c.1080
P H S L T P V A Q A D P L V R R Q R V Q p.360
. . . . | 11 . . g.39640
GACCTTATGGCACAAATGCAGGGTCCCTATAATTTCATACAG | GATTCAATGCTGGATTTT c.1140
D L M A Q M Q G P Y N F I Q | D S M L D F p.380
. . . . . . g.39700
GAAAATCAGACACTTGATCCTGCCATTGTATCTGCACAGCCTATGAATCCAACACAAAAC c.1200
E N Q T L D P A I V S A Q P M N P T Q N p.400
. . . | 12 . . . g.42741
ATGGACATGCCCCAGCTGGTTTGCCCTCCAG | TTCATTCTGAATCTAGACTTGCTCAGCCT c.1260
M D M P Q L V C P P V | H S E S R L A Q P p.420
. . . | 13 . . . g.43523
AATCAAGTTCCTGTACAACCAGAAGCGACACAG | GTTCCTTTGGTATCATCCACAAGTGAG c.1320
N Q V P V Q P E A T Q | V P L V S S T S E p.440
. . . . . . g.43583
GGGTACACAGCATCTCAACCCTTGTACCAGCCTTCTCATGCTACAGAGCAACGACCACAG c.1380
G Y T A S Q P L Y Q P S H A T E Q R P Q p.460
. . | 14 . . . . g.43882
AAGGAACCAATTGATCAGATTCAG | GCAACAATCTCTTTAAATACAGACCAGACTACAGCA c.1440
K E P I D Q I Q | A T I S L N T D Q T T A p.480
. . . . . . g.43942
TCATCATCCCTTCCTGCTGCGTCTCAGCCTCAAGTATTTCAGGCTGGGACAAGCAAACCT c.1500
S S S L P A A S Q P Q V F Q A G T S K P p.500
. . . . . | 15 . g.45229
TTACATAGCAGTGGAATCAATGTAAATGCAGCTCCATTCCAATCCATGCAAACG | GTGTTC c.1560
L H S S G I N V N A A P F Q S M Q T | V F p.520
. . . . . . g.45289
AATATGAATGCCCCAGTTCCTCCTGTTAATGAACCAGAAACTTTAAAACAGCAAAATCAG c.1620
N M N A P V P P V N E P E T L K Q Q N Q p.540
. . . . . . g.45349
TACCAGGCCAGTTATAACCAGAGCTTTTCTAGTCAGCCTCACCAAGTAGAACAAACAGAG c.1680
Y Q A S Y N Q S F S S Q P H Q V E Q T E p.560
. . | 16 . . . . g.49831
CTTCAGCAAGAACAGCTTCAAACAG | TGGTTGGCACTTACCATGGTTCCCCAGACCAGTCC c.1740
L Q Q E Q L Q T V | V G T Y H G S P D Q S p.580
. . . . . . g.49891
CATCAAGTGACTGGTAACCACCAGCAGCCTCCTCAGCAGAACACTGGATTTCCACGTAGC c.1800
H Q V T G N H Q Q P P Q Q N T G F P R S p.600
. . . . . . g.49951
AATCAGCCCTATTACAATAGTCGTGGTGTGTCTCGTGGAGGCTCCCGTGGTGCTAGAGGC c.1860
N Q P Y Y N S R G V S R G G S R G A R G p.620
. . . . | 17 . . g.50533
TTGATGAATGGATACCGGGGCCCTGCCAATGGATTCAGAG | GAGGATATGATGGTTACCGC c.1920
L M N G Y R G P A N G F R G | G Y D G Y R p.640
. . . . . . g.50593
CCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGTCTCAGTTCAGTGCTCCCCGG c.1980
P S F S N T P N S G Y T Q S Q F S A P R p.660
. . | 18 . . . . g.51054
GATTACTCTGGCTATCAACGG | GATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAG c.2040
D Y S G Y Q R | D G Y Q Q N F K R G S G Q p.680
. . | 19 . . . . g.52655
AGTGGACCACGGGGAGCCCCACGAG | GTCGTGGAGGGCCCCCAAGACCCAACAGAGGGATG c.2100
S G P R G A P R G | R G G P P R P N R G M p.700
. . . g.52685
CCGCAAATGAACACTCAGCAAGTGAATTAA c.2130
P Q M N T Q Q V N X p.709
. . . . . . g.52745
tctgattcacaggattatgtttaatcgccaaaaacacactggccagtgtaccataatatg c.*60
. . . . . . g.52805
ttaccagaagagttattatctatttgttctccctttcaggaaacttattgtaaagggact c.*120
. . . . . . g.52865
gttttcatcccataaagacaggactacaattgtcagctttctattacctggatatggaag c.*180
. . . . . . g.52925
gaaactatttttactctgcatgttctgtcctaagcgtcatcttgagccttgcacatgata c.*240
. . . . . . g.52985
ctcagattcctcacccttgcttaggagtaaaacaatatactttacagggtgataataatc c.*300
. . . . . . g.53045
tccatagttatttgaagtggcttgaaaaaggcaagattgacttttatgacattggataaa c.*360
. . . . . . g.53105
atctacaaatcagccctcgagttattcaatgataactgacaaactaaattatttccctag c.*420
. . . . . . g.53165
aaaggaagatgaaaggagtggagtgtggtttggcagaacaactgcatttcacagcttttc c.*480
. . . . . . g.53225
cagttaaattggagcactgaacgttcagatgcataccaaattatgcatgggtcctaatca c.*540
. . . . . . g.53285
cacatataaggctggctaccagctttgacacagcactgttcatctggccaaacaactgtg c.*600
. . . . . . g.53345
gttaaaaacacatgtaaaatgctttttaacagctgatactgtataagacaaagccaagat c.*660
. . . . . . g.53405
gcaaaattaggctttgattggcactttttgaaaaatatgcaacaaatatgggatgtaatc c.*720
. . . . . . g.53465
cggatggccgcttctgtacttaatgtgaaatatttagatacctttttgaacacttaacag c.*780
. . . . . . g.53525
tttctttgagacaatgacttttgtaaggattggtactatctatcattccttatgacatgt c.*840
. . . . . . g.53585
acattgtctgtcactaatccttggattttgctgtattgtcacctaaattggtacaggtac c.*900
. . . . . . g.53645
tgatgaaaatctctagtggataatcataacactctcggtcacatgtttttccttcagctt c.*960
. . . . . . g.53705
gaaagcttttttttaaaaggaaaagataccaaatgcctgctgctaccacccttttcaatt c.*1020
. . . . . . g.53765
gctatcttttgaaaggcaccagtatgtgttttagattgatttccctgtttcagggaaatc c.*1080
. . . . . . g.53825
acggacagtagtttcagttctgatggtataagcaaaacaaataaaacgtttataaaagtt c.*1140
. . . . . . g.53885
gtatcttgaaacactggtgttcaacagctagcagcttatgtgattcaccccatgccacgt c.*1200
. . . . . . g.53945
tagtgtcacaaattttatggtttatctccagcaacatttctctagtacttgcacttatta c.*1260
. . . . . . g.54005
tcttttgtctaatttaaccttaactgaattctccgtttctcctggaggcatttatattca c.*1320
. . . . . . g.54065
gtgataattccttcccttagatgcatagggagagtctctaaatttgatggaaatggacac c.*1380
. . . . . . g.54125
ttgagtagtgacttagccttatgtactctgttggaatttgtgctagcagtttgagcacta c.*1440
. . . . . . g.54185
gttctgtgtgcctaggaagttaatgctgcttattgtctcattctgacttcatggagaatt c.*1500
. . . . . . g.54245
aatcccacctttaagcaaaggctactaagttaatggtattttctgtgcagaaattaaatt c.*1560
. . . . . . g.54305
ttattttcagcatttagcccaggaattcttccagtaggtgctcagctatttaaaaacaaa c.*1620
. . . . . . g.54365
actattctcaaacattcatcattagacaactggagtttttgctggttttgtaacctacca c.*1680
. . . . . . g.54425
aaatggataggctgttgaacattccacattcaaaagttttgtagggtggtgggaaatggg c.*1740
. . . . . . g.54485
ggatcttcaatgtttattttaaaataaaataaaataagttcttgacttttctcatgtgtg c.*1800
. . . . . . g.54545
gttgtggtacatcatattggaagggttaacctgttactttggcaaatgagtatttttttg c.*1860
. . . . . . g.54605
ctagcacctccccttgcgtgctttaaatgacatctgcctgggatgtaccacaaccatatg c.*1920
. . . . . . g.54665
ttacctgtatcttaggggaatggataaaatatttgtggtttactgggtaatccctagatg c.*1980
. . . . . . g.54725
atgtatgcttgcagtcctatataaaactaaatttgctatctgtgtagaaaataatttcat c.*2040
. . . . . . g.54785
gacatttacaatcaggactgaagtaagttcttcacacagtgacctctgaatcagtttcag c.*2100
. . . . . . g.54845
agaagggatgggggagaaaatgccttctaggttttgaacttctatgcattagtgcagatg c.*2160
. . . . . . g.54905
ttgtgaatgtgtaaaggtgttcatagtttgactgtttctatgtatgttttttcaaagaat c.*2220
. . . . . . g.54965
tgttcctttttttgaactataatttttctttttttggttattttaccatcacagtttaaa c.*2280
. . . . . . g.55025
tgtatatcttttatgtctctactcagaccatatttttaaaggggtgcctcattatggggc c.*2340
. . . . . . g.55085
agagaacttttcaataagtctcattaagatctgaatcttggttctaagcattctgtataa c.*2400
. . . . . . g.55145
tatgtgattgcttgtcctagctgcagaaggccttttgtttggtcaaatgcatattttagc c.*2460
. . . . . . g.55205
agagtttcaaggaaatgattgtcacacatgtcactgtagcctcttggtgtagcaagctca c.*2520
. . . . . . g.55265
catacaaaatacttttgtatatgcataatataaatcatctcatgtggatatgaaacttct c.*2580
. . . . . . g.55325
tttttaaaacttaaaaaggtagaatgttattgattaccttgattagggcagttttatttc c.*2640
. . . . . . g.55385
cagatcctaataattcctaaaaaatatggaaaagttttttttcaatcattgtaccttgat c.*2700
. . . . . . g.55445
attaaaacaaatatcctttaagtatttctaatcagttagcttctacagttcttttgtctc c.*2760
. . . . . . g.55505
cttttatatgcagctcttacgtgggagacttttccacttaaaggagacatagaatgtgtg c.*2820
. . . . . . g.55565
cttattctcagaaggttcattaactgaggtgatgagttaacaactagttgagcagtcagc c.*2880
. . . . . . g.55625
ttcctaagtgttttaggacatttgttcattatattttccgtcatataactagaggaagtg c.*2940
. . . . . . g.55685
gaatgcagataagtgccgaattcaaacccttcattttatgtttaagctcctgaatctgca c.*3000
. . . . . . g.55745
ttccacttgggttgtttttaagcattctaaattttagttgattataagttagatttcaca c.*3060
. . . . . . g.55805
gaatcagtattgcccttgatcttgtcctttttatggagttaacggggaggaagacccctc c.*3120
. . . . . . g.55865
aggaaaacgaaagtaaattgttaaggctcatcttcatacctttttccattttgaatccta c.*3180
. . . . . . g.55925
caaaaatactgcaaaagactagtgaatgtttaaaattacactagattaaataatatgaaa c.*3240
g.55928
gtc c.*3243
(downstream sequence)
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