(used for variant description)
(last modified October 27, 2023)
This file was created to facilitate the description of sequence variants on transcript NM_003672.3 in the CDC14A gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000001.10, covering CDC14A transcript NM_003672.3.
(upstream sequence)
g.5008
agagtaac c.-481
. . . . . . g.5068
tgctgaaaggaggtggcgaaggaggatccggagcagctgctgccagcccgcgggcactga c.-421
. . . . . . g.5128
agtcctcccggctgccgctcgagtagccacgggcgcgatcgggaccagaagtctcctcct c.-361
. . . . . . g.5188
ccatgatcactttggaagccgggggaagactttgccctgccctgagagctggtctgcgtt c.-301
. . . . . . g.5248
tcccaggcgcggcggcggcggagcagcagctgcagcagccgagtccaaataggagcggcc c.-241
. . . . . . g.5308
acagccaggggcgtgagcgccccgcgcggagcgagctcgggttcccctcggaatgtcccc c.-181
. . . . . . g.5368
ggggcgcccggcgcgctgaccccgaagccgcctccgccttcggcgcctgctgcctccctc c.-121
. . . . . . g.5428
ggccaggcttgttgttcgggactgtgagcttcctggctcctgggcagtggggaagccccc c.-61
. . . . . . g.5488
gggggcgagtgacttcagctggccacgacccagccctcccccgtgcgtatctcgcttaag c.-1
. . . . | 02 . g.6306
ATGGCAGCGGAGTCAGGGGAACTAATCGGGGCTTGTGAGTTCATGAAAG | ATCGGTTATAT c.60
M A A E S G E L I G A C E F M K D | R L Y p.20
. . . . . . g.6366
TTTGCTACTTTAAGGAATAGACCAAAAAGCACAGTAAATACCCACTATTTCTCCATCGAT c.120
F A T L R N R P K S T V N T H Y F S I D p.40
. . | 03 . . . . g.30119
GAGGAGCTGGTCTATGAAAA | TTTCTATGCAGATTTTGGACCGCTGAACTTGGCAATGGTG c.180
E E L V Y E N | F Y A D F G P L N L A M V p.60
. . . | 04 . . . g.43289
TACAGATATTGCTGCAAACTAAACAAGAAACTAAAA | TCATACAGTTTGTCAAGAAAGAAA c.240
Y R Y C C K L N K K L K | S Y S L S R K K p.80
. . . . . . g.43349
ATAGTGCACTACACCTGTTTTGACCAACGGAAAAGAGCAAATGCAGCATTTTTGATAGGT c.300
I V H Y T C F D Q R K R A N A A F L I G p.100
| 05 . . . . . g.76806
GCCTATGCA | GTAATCTATTTAAAGAAGACACCAGAAGAAGCCTACAGAGCACTCCTGTCT c.360
A Y A | V I Y L K K T P E E A Y R A L L S p.120
. . | 06 . . . g.92496
GGCTCAAACCCCCCCTATCTTCCATTCAG | GGATGCTTCCTTTGGAAATTGCACTTACAAT c.420
G S N P P Y L P F R | D A S F G N C T Y N p.140
. . . | 07 . . . g.95491
CTCACCATTCTCGACTGTTTGCAGGGAATCAGAAAG | GGATTACAACATGGATTTTTTGAC c.480
L T I L D C L Q G I R K | G L Q H G F F D p.160
. . . | 08 . . g.107959
TTTGAGACATTTGATGTGGATGAATATGAACATTATGAG | CGAGTTGAAAATGGTGACTTC c.540
F E T F D V D E Y E H Y E | R V E N G D F p.180
. . . . . . g.108019
AACTGGATTGTTCCAGGAAAATTTTTAGCATTTAGTGGACCACATCCTAAAAGCAAAATT c.600
N W I V P G K F L A F S G P H P K S K I p.200
| 09. . . . . . g.115237
GAGAATG | GTTATCCTCTTCACGCCCCTGAAGCCTACTTTCCTTATTTCAAAAAGCATAAT c.660
E N G | Y P L H A P E A Y F P Y F K K H N p.220
. . . . . . g.115297
GTGACTGCAGTTGTGAGGCTAAACAAAAAGATTTATGAGGCAAAGCGCTTCACAGACGCT c.720
V T A V V R L N K K I Y E A K R F T D A p.240
. . . . . . g.115357
GGCTTCGAGCACTATGACCTCTTCTTCATAGATGGCAGCACACCCAGTGACAACATCGTG c.780
G F E H Y D L F F I D G S T P S D N I V p.260
. . . . . | 10 g.120491
CGAAGGTTCCTGAACATCTGTGAGAACACCGAAGGGGCCATCGCCGTTCACTGCAAAG | CT c.840
R R F L N I C E N T E G A I A V H C K A | p.280
. . . . . . g.120551
GGTCTTGGAAGAACAGGGACATTGATAGCCTGTTATGTAATGAAACACTACAGGTTTACA c.900
G L G R T G T L I A C Y V M K H Y R F T p.300
. . . . . . g.120611
CATGCTGAAATAATTGCTTGGATTAGAATATGCCGGCCAGGCTCTATTATAGGACCCCAG c.960
H A E I I A W I R I C R P G S I I G P Q p.320
. | 11. . . . . g.136868
CAGCACTTCCTGGAAGA | AAAACAAGCATCGTTGTGGGTCCAAGGAGACATTTTCCGATCC c.1020
Q H F L E E | K Q A S L W V Q G D I F R S p.340
. . . . . . g.136928
AAACTGAAAAATCGACCATCCAGTGAAGGAAGTATTAATAAAATTCTTTCTGGCCTAGAT c.1080
K L K N R P S S E G S I N K I L S G L D p.360
. . . . . | 12. g.147354
GATATGTCTATTGGTGGAAATCTTTCAAAAACACAAAACATGGAACGATTTGGAGAG | GAT c.1140
D M S I G G N L S K T Q N M E R F G E | D p.380
. . . . . . g.147414
AACTTAGAAGATGATGATGTGGAAATGAAAAATGGTATAACCCAGGGAGACAAACTACGT c.1200
N L E D D D V E M K N G I T Q G D K L R p.400
. . . . . | 13 . g.148545
GCCTTAAAAAGTCAGAGACAGCCACGTACCTCACCATCCTGTGCATTTAG | GTCAGATGAT c.1260
A L K S Q R Q P R T S P S C A F R | S D D p.420
. . . | 14 . . g.150640
ACAAAAGGACATCCAAGAGCAGTGTCCCAGCCTTTCAG | ATTAAGTTCATCCCTGCAAGGA c.1320
T K G H P R A V S Q P F R | L S S S L Q G p.440
. . . . . . g.150700
TCTGCAGTTACTTTGAAGACATCAAAAATGGCACTGTCCCCTTCAGCAACGGCCAAGAGG c.1380
S A V T L K T S K M A L S P S A T A K R p.460
. . . . | 15 . . g.151481
ATCAACAGAACTTCTTTGTCTTCGGGTGCCACTGTAAGAAG | CTTTTCCATAAACTCCCGG c.1440
I N R T S L S S G A T V R S | F S I N S R p.480
. . . . . . g.151541
CTAGCCAGTTCTCTAGGGAACTTGAATGCTGCAACAGATGATCCAGAGAACAAAAAGACC c.1500
L A S S L G N L N A A T D D P E N K K T p.500
. . . . . . g.151601
TCCTCATCCTCTAAGGCAGGCTTCACAGCCAGCCCGTTTACCAACCTCTTGAATGGCAGC c.1560
S S S S K A G F T A S P F T N L L N G S p.520
. . . . . . g.151661
TCCCAGCCAACTACCAGAAATTACCCTGAGCTCAACAATAATCAGTACAACAGAAGCAGC c.1620
S Q P T T R N Y P E L N N N Q Y N R S S p.540
. . . . . . g.151721
AACAGCAACGGGGGCAACCTGAACAGCCCCCCAGGCCCCCACAGCGCCAAGACAGAGGAG c.1680
N S N G G N L N S P P G P H S A K T E E p.560
. . . . . . g.151781
CACACCACCATCCTCCGACCCTCCTACACCGGGCTTTCTTCTTCTTCAGCGAGATTCCTG c.1740
H T T I L R P S Y T G L S S S S A R F L p.580
. | 16 . . . g.170829
AGCCGTTCTATCCCT | TCCCTTCAGTCTGAATATGTTCATTACTAA c.1785
S R S I P | S L Q S E Y V H Y X p.594
. . . . . . g.170889
ggccttgccactccagtgaaagctgttcttctcttagacacaatttcttcatctggacga c.*60
. . . . . . g.170949
gcagtggagagggaaagcaacttcttgctggaagaatatctctgccttcttaccttaaat c.*120
. . . . . . g.171009
taaaaagagcactaagataacaccttcaagagacttgaaaacagaaaactggttaatgac c.*180
. . . . . . g.171069
tactataaatgcactgaaactatgtttatggagatttccatacttttaaagacagtttta c.*240
. . . . . . g.171129
atgttgaatttggtattttgaagggttatttttaatgtattttggtaatacatttattat c.*300
. . . . . . g.171189
tatatttacatgtacagtgttacattatatatgtattgtgaactttaaaagactattttg c.*360
. . . . . . g.171249
ataaatttataaatatataaaattatgtaaaaactacactatattttgatttagattttc c.*420
. . . . . . g.171309
ctgctgtttgctaccaaaaatttgtattttaaatctgtttagttttagtatggttttgtc c.*480
. . . . . . g.171369
tctaatgaataaataattccttcttattaagaagaagtaagggagaaagtttttagaaag c.*540
. . . . . . g.171429
tgatttttatgctcgcactataaatatggcaggtcagttcattcttttgggaagtcagtt c.*600
. . . . . . g.171489
tagttacactgagtttatccaagtttatctctaccaagagtataatggcatgggatggct c.*660
. . . . . . g.171549
tatttaggacaattccctttcctattgtttttgttgctgagccaatttgagttagttttg c.*720
. . . . . . g.171609
catcctggggggctttaaaatacagcatgcagtgaaagatcagaattcactgaatatttc c.*780
. . . . . . g.171669
ttctgagagcatggtttcatggtttttctctatgaaatgactcaatattccaaatgtttt c.*840
. . . . . . g.171729
tttttccttcctcctttcaaaagagttcttaacccaattaggatatcctgctttgggtat c.*900
. . . . . . g.171789
gaggttgttgttgcctgtaatcacacatggtttgacatcagttttaaatcaatggagaga c.*960
. . . . . . g.171849
aaaaactgaaaaagatgctgctaagtagttctctgtattaaaggagatatttttaaaaca c.*1020
. . . . . . g.171909
gggtacaaccccctgctgcacacgctagcatatctggaacctactatgaaaatgaaagga c.*1080
. . . . . . g.171969
cccttataggtactcacagccctttcatgtaagtatgatctgatatttaggtcttcagaa c.*1140
. . . . . . g.172029
gcctgtaggtttcatttctatgaggaatcgaggagcgttacatcctgatatccttccagg c.*1200
. . . . . . g.172089
ctgcttaagaatggactgcttcgacactgaaagtgctagttaaatggattcatatgaagt c.*1260
. . . . . . g.172149
gctttactcccaaccattgagttatttataatgtatttattaggggagggtaccttgagt c.*1320
. . . . . . g.172209
ctattatatatgcttcatcaaaacatcttgttcatgttttatgtttttaaaaaaggcatt c.*1380
. . . . . . g.172269
tgaatgaatgtttgactcaggtttgttaaattaaccttcagtaactgcagtaccaaaaat c.*1440
. . . . . . g.172329
tacactcaactgatgaaaaaaacgaattgtatgatttaggaatcaaaaactaaaataagt c.*1500
. . . . . . g.172389
ggaattatgtatcttttctaaagttaaaaaagtaaaatattttattatgagttattataa c.*1560
. . . . . . g.172449
aaattggttaattgtataggaagatgacagtatttttttcaagttatcataaaaagtaat c.*1620
. . . . . . g.172509
tcagatgacatttgagaagtaggggaaagggaatcatgttgacagttttagttctgtgaa c.*1680
. . . . . . g.172569
cactaatttgtgtgaagctattaaaatgattgtaaagttgactactgtaaatttcccata c.*1740
. . . . . . g.172629
attatgtgtgtatatgtgtcatatgtatgtacatgtatatgtctaaaaattactttacac c.*1800
. . . . . . g.172689
atgtgcctacatagacacaccaagaagtggatgtatataatatagaaagtatatagcaaa c.*1860
. . . . . . g.172749
gtaattttactctgataataaaaattgtttgacatgtattttgttatgaatagtttatct c.*1920
. . . . . . g.172809
tccaaaagatattttgctctattttaaagtgtagaagaatacactgctaataaataataa c.*1980
. g.172826
aagttttattcaattta c.*1997
(downstream sequence)
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