(used for variant description)
(last modified June 16, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_007186.3 in the CEP250 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000020.10, covering CEP250 transcript NM_007186.3.
(upstream sequence)
. . . . g.5047
cccggggcccgcttgcctcagcttcttgctgccgccagcacgctaag c.-601
. . . . . . g.5107
ctccagtcggcgccgaaggagagcttcccgaccctcgtgtccagtagccgcaatcccagg c.-541
. . . . . . g.5167
ctgggagggtgaggcgccgcgctctgccgcccccccgcccctcgctccctgtgtcctggc c.-481
. . . . . . g.5227
ggatttgcacgtaatctatccgaaagcccagtcccacccgccacccgactctggagctcc c.-421
. . . . . . g.5287
cattcttcaggaccctgctgaagtatcgcttctcagccgccttctccaggcgcagctgca c.-361
. . . . . . g.5347
ttcgcttctcggtttttgcactcgctgtgcaccgagttactttcccggcccctcgttgac c.-301
. | 02 . . . . . g.7959
acc | gttcacaggtggctgttggtctttagtaagggtgctgtcttccctgtctgatcctta c.-241
. . | 03 . . . . g.9626
gcaaaagtaggaag | gtagagttgttggcagaaatcctgggataagagaatagtttcctgg c.-181
. . . . . . g.9686
aagatctgtgcctccaaccagcagagagggattgagcttcattgaactcaacagagccaa c.-121
. . | 04 . . . . g.11910
catttcatagcaccatg | ttcaagaggaggttgaagtggcatggcaatggttagagaccct c.-61
. . . . . . g.11970
gctgggcgtgaacaccctctggctacctagggacctgtgggcctaccacctggtgccctc c.-1
. . . . . . g.12030
ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTG c.60
M E T R S P G L N N M K P Q S L Q L V L p.20
. . . . . . g.12090
GAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGG c.120
E E Q V L A L Q Q Q M A E N Q A A S W R p.40
. . . . . . g.12150
AAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAG c.180
K L K N S Q E A Q Q R Q A T L V R K L Q p.60
| 05 . . . . . . g.13231
GCCAAG | GTGCTGCAGTACCGAAGCTGGTGCCAAGAGCTGGAGAAGCGGCTAGAAGCCACT c.240
A K | V L Q Y R S W C Q E L E K R L E A T p.80
| 06 . . . . . . g.15402
GGA | GGACCAATCCCCCAGAGGTGGGAAAATGTGGAGGAGCCAAACCTGGATGAGCTGCTG c.300
G | G P I P Q R W E N V E E P N L D E L L p.100
. . | 07 . . . . g.15675
GTCCGATTGGAGGAGGAGCAACAGAG | GTGTGAGAGTCTAGCAGAGGTGAACACCCAGCTT c.360
V R L E E E Q Q R | C E S L A E V N T Q L p.120
. . . . . . g.15735
CGACTGCACATGGAAAAAGCTGACGTGGTGAATAAAGCCCTTAGGGAAGATGTGGAAAAA c.420
R L H M E K A D V V N K A L R E D V E K p.140
. . . . . . g.15795
CTGACAGTGGACTGGAGCCGGGCCCGGGATGAGCTAATGAGGAAGGAGAGCCAGTGGCAG c.480
L T V D W S R A R D E L M R K E S Q W Q p.160
. | 08 . . . . . g.16616
ATGGAGCAGGAG | TTCTTCAAGGGCTACCTGAAAGGGGAGCACGGTCGCCTTCTCAGTCTA c.540
M E Q E | F F K G Y L K G E H G R L L S L p.180
. . . . . | 09 g.16907
TGGCGGGAGGTTGTGACATTCCGACGCCACTTCCTGGAAATGAAGTCAGCTACTGACAG | A c.600
W R E V V T F R R H F L E M K S A T D R | p.200
. . . . . . g.16967
GATCTGATGGAGCTAAAAGCTGAGCATGTGAGGCTTTCAGGGTCTCTGTTGACCTGTTGT c.660
D L M E L K A E H V R L S G S L L T C C p.220
. . . . . . g.17027
CTGCGCTTGACTGTGGGAGCACAGTCTCGGGAACCCAACGGATCTGGAAGAATGGATGGG c.720
L R L T V G A Q S R E P N G S G R M D G p.240
. . . . . . g.17087
CGGGAGCCGGCCCAGCTGCTGCTGCTACTAGCCAAGACCCAGGAGCTGGAGAAGGAAGCC c.780
R E P A Q L L L L L A K T Q E L E K E A p.260
. . . . . . g.17147
CATGAAAGGAGCCAGGAGTTAATACAGCTGAAGAGTCAAGGGGATCTGGAGAAGGCTGAA c.840
H E R S Q E L I Q L K S Q G D L E K A E p.280
. | 10 . . . . . g.19541
CTTCAGGACCG | GGTGACCGAGCTCTCTGCTCTGTTGACCCAGTCTCAGAAGCAAAATGAA c.900
L Q D R | V T E L S A L L T Q S Q K Q N E p.300
. . . . | 11 . g.21664
GATTATGAAAAGATGATAAAGGCTCTGAGAGAGACAGTGGAGATCCTG | GAGACAAATCAC c.960
D Y E K M I K A L R E T V E I L | E T N H p.320
. . . . . . g.21724
ACAGAATTAATGGAACATGAAGCATCTCTTAGTAGGAATGCGCAAGAGGAGAAGTTGTCT c.1020
T E L M E H E A S L S R N A Q E E K L S p.340
. . . | 12 . . . g.22305
TTACAGCAGGTGATCAAGGATATAACCCAG | GTCATGGTGGAAGAAGGGGACAATATAGCC c.1080
L Q Q V I K D I T Q | V M V E E G D N I A p.360
. . . . . . g.22365
CAAGGCTCTGGTCATGAGAACTCTTTGGAATTGGACTCTAGTATCTTCTCCCAGTTTGAT c.1140
Q G S G H E N S L E L D S S I F S Q F D p.380
. . . . . . g.22425
TACCAGGATGCAGACAAGGCTCTTACTCTGGTGCGTTCAGTGCTGACTCGGAGACGCCAG c.1200
Y Q D A D K A L T L V R S V L T R R R Q p.400
| 13 . . . . . g.23027
GCTGTGCAG | GACCTAAGGCAGCAGCTTGCAGGCTGTCAAGAGGCTGTGAACTTGTTGCAA c.1260
A V Q | D L R Q Q L A G C Q E A V N L L Q p.420
. . . . . . g.23087
CAGCAGCATGATCAGTGGGAGGAAGAGGGCAAAGCCTTGAGACAGCGGCTGCAGAAGCTC c.1320
Q Q H D Q W E E E G K A L R Q R L Q K L p.440
. . . . . . g.23147
ACTGGGGAGCGGGACACTCTGGCAGGGCAGACTGTGGACCTCCAGGGAGAGGTGGACTCT c.1380
T G E R D T L A G Q T V D L Q G E V D S p.460
| 14 . . . . . g.23524
CTCAGCAA | GGAGCGAGAGCTGCTGCAGAAGGCCAGGGAAGAGCTGCGGCAGCAGCTGGAG c.1440
L S K | E R E L L Q K A R E E L R Q Q L E p.480
. . . . . . g.23584
GTGCTAGAGCAGGAGGCATGGCGCCTGCGAAGGGTAAATGTGGAGCTTCAGCTGCAGGGG c.1500
V L E Q E A W R L R R V N V E L Q L Q G p.500
. . . . . . g.23644
GACTCTGCCCAGGGCCAGAAGGAGGAACAGCAGGAGGAGCTGCACCTGGCTGTCCGGGAG c.1560
D S A Q G Q K E E Q Q E E L H L A V R E p.520
. | 15 . . . . . g.25153
AGGGAGCGTCT | TCAGGAGATGCTGATGGGCCTGGAAGCCAAACAGTCAGAATCACTCAGT c.1620
R E R L | Q E M L M G L E A K Q S E S L S p.540
. . . . . . g.25213
GAACTGATCACTCTTCGGGAAGCCCTGGAGTCAAGTCACCTGGAAGGGGAGTTACTGAGG c.1680
E L I T L R E A L E S S H L E G E L L R p.560
. . . | 16 . . . g.26075
CAAGAGCAAACGGAAGTGACCGCAGCGCTGGCTAGG | GCAGAGCAGTCAATTGCAGAGCTG c.1740
Q E Q T E V T A A L A R | A E Q S I A E L p.580
. . . . . . g.26135
TCGAGTTCTGAAAACACCCTGAAGACAGAAGTAGCTGATCTTCGGGCTGCAGCTGTCAAG c.1800
S S S E N T L K T E V A D L R A A A V K p.600
. . . . . . g.26195
CTCAGTGCCTTAAATGAGGCTTTGGCGTTAGATAAAGTTGGGCTGAACCAGCAGCTTCTC c.1860
L S A L N E A L A L D K V G L N Q Q L L p.620
| 17 . . . . . . g.27530
CAG | TTAGAGGAGGAGAACCAGTCTGTGTGCAGCAGAATGGAGGCCGCAGAGCAGGCGAGA c.1920
Q | L E E E N Q S V C S R M E A A E Q A R p.640
. . . . . . g.27590
AATGCTTTGCAGGTCGACCTGGCGGAGGCAGAGAAGAGGAGGGAAGCCCTGTGGGAAAAG c.1980
N A L Q V D L A E A E K R R E A L W E K p.660
. . . . . . g.27650
AACACTCACCTGGAGGCTCAGCTGCAGAAAGCTGAGGAGGCTGGGGCTGAGCTGCAGGCA c.2040
N T H L E A Q L Q K A E E A G A E L Q A p.680
. . . . . | 18 . g.28839
GATCTCAGGGACATCCAAGAAGAGAAGGAAGAAATTCAAAAGAAACTAAGTGAG | TCACGT c.2100
D L R D I Q E E K E E I Q K K L S E | S R p.700
. . . . . . g.28899
CACCAGCAGGAGGCAGCCACGACTCAGCTGGAGCAGCTACATCAGGAGGCAAAGCGACAG c.2160
H Q Q E A A T T Q L E Q L H Q E A K R Q p.720
. . . . . . g.28959
GAAGAAGTGCTTGCCAGGGCAGTCCAGGAGAAGGAGGCCCTAGTACGAGAGAAAGCGGCT c.2220
E E V L A R A V Q E K E A L V R E K A A p.740
. . . . . . g.29019
CTAGAGGTGCGGCTGCAGGCCGTGGAGCGTGACCGGCAGGACCTCGCTGAACAACTACAG c.2280
L E V R L Q A V E R D R Q D L A E Q L Q p.760
| 19 . . . . . g.29300
GGGCTCAG | CTCAGCCAAGGAGCTACTGGAGAGCAGTCTGTTTGAAGCCCAACAACAAAAT c.2340
G L S | S A K E L L E S S L F E A Q Q Q N p.780
. . . . . . g.29360
TCTGTGATAGAGGTCACCAAGGGGCAGCTGGAGGTCCAGATTCAAACTGTCACTCAAGCC c.2400
S V I E V T K G Q L E V Q I Q T V T Q A p.800
. | 20 . . . . . g.29622
AAGGAAGTAATCCAAG | GGGAAGTGAGGTGCCTGAAGCTGGAACTGGACACTGAACGGAGT c.2460
K E V I Q G | E V R C L K L E L D T E R S p.820
. . . . . . g.29682
CAGGCAGAGCAGGAGCGGGATGCTGCAGCCAGACAGCTGGCCCAGGCTGAGCAAGAAGGG c.2520
Q A E Q E R D A A A R Q L A Q A E Q E G p.840
. . . . . . g.29742
AAGACTGCCTTGGAGCAGCAGAAGGCAGCCCATGAGAAAGAGGTGAACCAGCTCCGGGAG c.2580
K T A L E Q Q K A A H E K E V N Q L R E p.860
| 21 . . . . . . g.40294
AAATGG | GAGAAGGAGCGCTCCTGGCACCAGCAGGAGCTGGCAAAGGCTCTGGAGAGCTTA c.2640
K W | E K E R S W H Q Q E L A K A L E S L p.880
. . . . . . g.40354
GAAAGGGAAAAAATGGAGCTGGAAATGAGGCTAAAGGAGCAGCAGACAGAAATGGAGGCC c.2700
E R E K M E L E M R L K E Q Q T E M E A p.900
. . . . . | 22 . g.40821
ATCCAGGCCCAGAGGGAAGAAGAACGGACCCAGGCAGAGAGTGCCCTATGCCAG | ATGCAG c.2760
I Q A Q R E E E R T Q A E S A L C Q | M Q p.920
. . . . . . g.40881
CTGGAAACAGAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGACGCAGAAGGAG c.2820
L E T E K E R V S L L E T L L Q T Q K E p.940
. . . . . . g.40941
CTAGCAGATGCCAGCCAACAACTGGAACGACTGAGGCAGGACATGAAAGTCCAGAAATTA c.2880
L A D A S Q Q L E R L R Q D M K V Q K L p.960
| 23 . . . . . g.43084
AAGGAGCAG | GAGACCACTGGGATACTACAGACCCAGCTCCAGGAGGCTCAACGGGAGCTG c.2940
K E Q | E T T G I L Q T Q L Q E A Q R E L p.980
. . . . . . g.43144
AAGGAGGCAGCCCGGCAGCACAGAGATGACCTTGCTGCCCTCCAAGAAGAGAGCAGCTCC c.3000
K E A A R Q H R D D L A A L Q E E S S S p.1000
. . . | 24 . . . g.44155
CTGCTGCAGGATAAGATGGACCTGCAGAAGCAG | GTGGAGGACTTGAAGTCTCAGCTGGTG c.3060
L L Q D K M D L Q K Q | V E D L K S Q L V p.1020
. . . . . . g.44215
GCCCAGGATGACTCCCAGAGGCTGGTGGAGCAGGAGGTTCAGGAGAAGCTGAGAGAGACC c.3120
A Q D D S Q R L V E Q E V Q E K L R E T p.1040
. . . . | 25. . g.46196
CAGGAGTATAACCGAATTCAGAAGGAGCTGGAGAGAGAGAAAGCCAG | CCTGACTCTGTCA c.3180
Q E Y N R I Q K E L E R E K A S | L T L S p.1060
. . . . . . g.46256
CTGATGGAAAAGGAACAGAGACTCCTTGTTTTACAAGAAGCTGACTCTATTCGACAACAA c.3240
L M E K E Q R L L V L Q E A D S I R Q Q p.1080
. . . . . . g.46316
GAGCTGAGTGCCCTGCGCCAGGACATGCAGGAGGCCCAGGGAGAACAGAAAGAGCTCAGT c.3300
E L S A L R Q D M Q E A Q G E Q K E L S p.1100
| 26 . . . . . . g.47379
GCTCAG | ATGGAATTACTAAGGCAAGAGGTGAAGGAAAAGGAGGCTGACTTTCTGGCCCAG c.3360
A Q | M E L L R Q E V K E K E A D F L A Q p.1120
. . . . . . g.47439
GAAGCACAGCTGCTGGAGGAGCTGGAGGCGTCTCATATCACGGAGCAGCAGCTGCGAGCC c.3420
E A Q L L E E L E A S H I T E Q Q L R A p.1140
. . . . . . g.47499
TCCTTGTGGGCCCAGGAAGCCAAGGCAGCCCAACTACAGCTGCGACTGCGCAGCACAGAG c.3480
S L W A Q E A K A A Q L Q L R L R S T E p.1160
. . . . . . g.47559
AGCCAGCTAGAAGCGCTGGCCGCAGAGCAGCAGCCCGGGAACCAGGCCCAGGCCCAGGCC c.3540
S Q L E A L A A E Q Q P G N Q A Q A Q A p.1180
. . . . . . g.47619
CAGCTGGCCAGCCTCTACTCTGCCCTGCAGCAGGCCCTGGGGTCTGTTTGTGAGAGCAGG c.3600
Q L A S L Y S A L Q Q A L G S V C E S R p.1200
. . . . . | 27 . g.48206
CCTGAGCTGAGTGGTGGGGGAGACTCTGCTCCTTCCGTCTGGGGCCTTGAGCCAG | ACCAG c.3660
P E L S G G G D S A P S V W G L E P D | Q p.1220
. . . . . . g.48266
AATGGAGCTAGGAGCCTCTTTAAGAGAGGGCCCCTGCTGACTGCTCTCTCCGCTGAGGCA c.3720
N G A R S L F K R G P L L T A L S A E A p.1240
. . . . . | 28. g.49658
GTAGCATCTGCCCTCCACAAGCTTCATCAAGACCTGTGGAAGACTCAACAGACCCGG | GAT c.3780
V A S A L H K L H Q D L W K T Q Q T R | D p.1260
. . . . . . g.49718
GTTCTGAGGGATCAGGTCCAGAAACTGGAAGAGCGTCTAACTGATACTGAGGCTGAGAAG c.3840
V L R D Q V Q K L E E R L T D T E A E K p.1280
. . . . . | 29 g.51451
AGCCAGGTCCACACAGAGTTGCAGGATCTGCAGAGACAGCTCTCCCAGAATCAGGAAG | AG c.3900
S Q V H T E L Q D L Q R Q L S Q N Q E E | p.1300
. . . . . . g.51511
AAATCCAAGTGGGAAGGAAAGCAGAACTCCCTAGAATCTGAGCTGATGGAACTACATGAA c.3960
K S K W E G K Q N S L E S E L M E L H E p.1320
. . . . . . g.51571
ACTATGGCATCCTTACAGAGTCGCCTGCGGAGAGCAGAGCTACAGCGAATGGAAGCCCAG c.4020
T M A S L Q S R L R R A E L Q R M E A Q p.1340
| 30 . . . . . . g.52055
| GGTGAGCGAGAGTTACTTCAGGCAGCCAAGGAGAACCTGACAGCCCAGGTGGAACACCTG c.4080
| G E R E L L Q A A K E N L T A Q V E H L p.1360
. . . . . . g.52115
CAAGCAGCTGTCGTAGAAGCCAGGGCTCAGGCAAGTGCTGCTGGCATCCTGGAAGAAGAC c.4140
Q A A V V E A R A Q A S A A G I L E E D p.1380
. . . . . . g.52175
CTGAGAACGGCTCGCTCAGCACTGAAGCTGAAAAATGAGGAAGTAGAGAGTGAGCGTGAG c.4200
L R T A R S A L K L K N E E V E S E R E p.1400
. . . . . . g.52235
AGAGCCCAGGCTCTGCAAGAGCAGGGCGAACTGAAGGTGGCCCAAGGGAAGGCTCTGCAA c.4260
R A Q A L Q E Q G E L K V A Q G K A L Q p.1420
. . . . . . g.52295
GAGAATTTGGCCCTCCTGACCCAGACCCTAGCTGAAAGAGAAGAGGAGGTGGAGACTCTG c.4320
E N L A L L T Q T L A E R E E E V E T L p.1440
. . . . . . g.52355
CGGGGACAAATCCAGGAACTGGAGAAGCAACGGGAAATGCAGAAGGCTGCTTTGGAATTG c.4380
R G Q I Q E L E K Q R E M Q K A A L E L p.1460
. . . . . . g.52415
CTGTCTCTGGACCTGAAGAAGAGGAACCAAGAGGTAGATCTGCAGCAAGAACAGATTCAG c.4440
L S L D L K K R N Q E V D L Q Q E Q I Q p.1480
. . . . . . g.52475
GAGCTAGAGAAGTGTAGGTCTGTTTTAGAGCATCTGCCCATGGCCGTCCAGGAGCGAGAG c.4500
E L E K C R S V L E H L P M A V Q E R E p.1500
. . . . . . g.52535
CAGAAGCTGACTGTGCAGAGGGAGCAGATCAGAGAGCTCGAGAAGGATCGGGAGACTCAG c.4560
Q K L T V Q R E Q I R E L E K D R E T Q p.1520
. . . . . . g.52595
AGGAACGTCTTGGAGCATCAGCTTCTAGAACTTGAGAAGAAAGACCAAATGATTGAGTCC c.4620
R N V L E H Q L L E L E K K D Q M I E S p.1540
. . . . . . g.52655
CAGAGAGGACAGGTTCAGGACCTGAAAAAGCAGTTGGTTACTCTGGAATGCCTGGCCCTG c.4680
Q R G Q V Q D L K K Q L V T L E C L A L p.1560
. . . . . . g.52715
GAACTGGAGGAAAACCATCACAAGATGGAGTGCCAGCAAAAACTGATCAAGGAGCTGGAG c.4740
E L E E N H H K M E C Q Q K L I K E L E p.1580
. . . . . . g.52775
GGCCAGAGGGAAACCCAGAGAGTGGCTTTGACCCACCTTACGCTGGACCTAGAAGAAAGG c.4800
G Q R E T Q R V A L T H L T L D L E E R p.1600
. . . . . . g.52835
AGCCAGGAGCTGCAGGCACAAAGCAGCCAGATCCATGACCTGGAGAGCCACAGCACCGTT c.4860
S Q E L Q A Q S S Q I H D L E S H S T V p.1620
. . . . . . g.52895
CTGGCAAGAGAGCTGCAGGAGAGGGACCAGGAGGTGAAGTCTCAGCGAGAACAGATCGAG c.4920
L A R E L Q E R D Q E V K S Q R E Q I E p.1640
. . . . . . g.52955
GAGCTGCAGAGGCAGAAAGAGCATCTGACTCAGGATCTCGAGAGGAGAGACCAGGAGCTG c.4980
E L Q R Q K E H L T Q D L E R R D Q E L p.1660
. . . . . . g.53015
ATGCTGCAGAAGGAGAGGATTCAGGTTCTCGAGGATCAGAGGACCCGGCAGACCAAGATC c.5040
M L Q K E R I Q V L E D Q R T R Q T K I p.1680
. . . . . . g.53075
CTGGAGGAGGACCTGGAACAGATCAAGCTGTCCTTGAGAGAGCGAGGCCGGGAGCTGACC c.5100
L E E D L E Q I K L S L R E R G R E L T p.1700
. . . . . . g.53135
ACTCAGAGGCAGCTGATGCAGGAACGGGCAGAGGAAGGGAAGGGCCCAAGTAAAGCACAG c.5160
T Q R Q L M Q E R A E E G K G P S K A Q p.1720
. . . . . . g.53195
CGCGGGAGCCTAGAGCACATGAAGCTGATCCTGCGTGATAAGGAGAAGGAGGTGGAATGT c.5220
R G S L E H M K L I L R D K E K E V E C p.1740
. . . . . . g.53255
CAGCAGGAGCATATCCATGAACTCCAGGAGCTCAAAGACCAGCTGGAGCAGCAGCTCCAG c.5280
Q Q E H I H E L Q E L K D Q L E Q Q L Q p.1760
. . . . . . g.53315
GGCCTGCACAGGAAGGTAGGTGAGACCAGCCTCCTCCTGTCCCAGCGAGAGCAGGAAATA c.5340
G L H R K V G E T S L L L S Q R E Q E I p.1780
. . . . . . g.53375
GTGGTCCTGCAGCAGCAACTGCAGGAAGCCAGGGAACAAGGGGAGCTGAAGGAGCAGTCA c.5400
V V L Q Q Q L Q E A R E Q G E L K E Q S p.1800
. . . . . . g.53435
CTTCAGAGTCAACTGGATGAGGCCCAGAGAGCCCTAGCCCAGAGGGACCAGGAACTGGAG c.5460
L Q S Q L D E A Q R A L A Q R D Q E L E p.1820
. . . . . . g.53495
GCTCTGCAGCAAGAACAGCAGCAGGCCCAGGGACAGGAGGAGAGGGTGAAGGAAAAGGCA c.5520
A L Q Q E Q Q Q A Q G Q E E R V K E K A p.1840
. . . . . . g.53555
GACGCCCTCCAGGGAGCTCTGGAGCAAGCCCATATGACACTGAAGGAGCGTCATGGAGAG c.5580
D A L Q G A L E Q A H M T L K E R H G E p.1860
. . . . . . g.53615
CTTCAGGACCACAAGGAACAGGCACGAAGGCTGGAGGAAGAGCTGGCAGTGGAGGGACGG c.5640
L Q D H K E Q A R R L E E E L A V E G R p.1880
. . . . . . g.53675
CGGGTCCAGGCCCTGGAGGAGGTGCTGGGAGACCTAAGGGCTGAGTCTCGGGAACAGGAG c.5700
R V Q A L E E V L G D L R A E S R E Q E p.1900
. . . . . . g.53735
AAAGCTCTGTTGGCCCTCCAGCAGCAGTGTGCTGAGCAGGCACAGGAGCATGAGGTGGAG c.5760
K A L L A L Q Q Q C A E Q A Q E H E V E p.1920
. . . . . . g.53795
ACCAGGGCCCTGCAGGACAGCTGGCTGCAGGCCCAGGCAGTGCTCAAGGAACGGGACCAG c.5820
T R A L Q D S W L Q A Q A V L K E R D Q p.1940
. . . . . . g.53855
GAGCTGGAAGCTCTGCGGGCAGAAAGTCAGTCCTCCCGGCATCAGGAGGAGGCTGCCCGG c.5880
E L E A L R A E S Q S S R H Q E E A A R p.1960
. . . . . . g.53915
GCCCGGGCTGAGGCTCTGCAGGAGGCCCTTGGCAAGGCTCATGCTGCCCTGCAGGGGAAA c.5940
A R A E A L Q E A L G K A H A A L Q G K p.1980
. . . . . . g.53975
GAGCAGCATCTCCTCGAGCAGGCAGAATTGAGCCGCAGTCTGGAGGCCAGCACTGCAACC c.6000
E Q H L L E Q A E L S R S L E A S T A T p.2000
. . . . . . g.54035
CTGCAAGCCTCCCTGGATGCCTGCCAGGCACACAGTCGGCAGCTGGAGGAGGCTCTGAGG c.6060
L Q A S L D A C Q A H S R Q L E E A L R p.2020
. . . . . . g.54095
ATACAAGAAGGTGAGATCCAGGACCAGGATCTCCGATACCAGGAGGATGTGCAGCAGCTG c.6120
I Q E G E I Q D Q D L R Y Q E D V Q Q L p.2040
. . . . . . g.54155
CAGCAGGCACTTGCCCAGAGGGATGAAGAGCTGAGACATCAGCAGGAACGGGAGCAGCTG c.6180
Q Q A L A Q R D E E L R H Q Q E R E Q L p.2060
. . . . . . g.54215
CTGGAGAAGTCTCTGGCCCAGAGGGTCCAAGAGAATATGATCCAAGAGAAGCAGAATCTG c.6240
L E K S L A Q R V Q E N M I Q E K Q N L p.2080
. . . . . . g.54275
GGGCAAGAGAGAGAAGAGGAGGAGATAAGGGGCCTTCATCAGAGTGTAAGGGAGCTACAG c.6300
G Q E R E E E E I R G L H Q S V R E L Q p.2100
. . . . . . g.54335
CTGACTCTAGCCCAAAAGGAACAGGAGATTCTGGAGCTGAGGGAGACCCAGCAAAGGAAC c.6360
L T L A Q K E Q E I L E L R E T Q Q R N p.2120
. . . . . . g.54395
AACCTGGAAGCCTTACCCCACAGCCACAAAACCTCCCCAATGGAGGAACAATCTCTAAAA c.6420
N L E A L P H S H K T S P M E E Q S L K p.2140
. . . . . . g.54455
CTTGATTCTTTAGAGCCCAGGCTGCAGCGGGAGCTGGAGCGGCTACAGGCAGCCCTGAGA c.6480
L D S L E P R L Q R E L E R L Q A A L R p.2160
. . . . . . g.54515
CAGACAGAAGCCAGGGAGATTGAGTGGAGGGAGAAGGCCCAGGACTTGGCACTCTCCCTA c.6540
Q T E A R E I E W R E K A Q D L A L S L p.2180
. . . . . . g.54575
GCGCAGACCAAGGCCAGTGTCAGCAGTCTGCAGGAGGTAGCCATGTTCCTACAAGCCTCT c.6600
A Q T K A S V S S L Q E V A M F L Q A S p.2200
. . . | 31 . . . g.57368
GTCCTGGAGCGGGACTCAGAACAGCAAAGGCTGCAG | GATGAACTGGAGCTCACCAGACGG c.6660
V L E R D S E Q Q R L Q | D E L E L T R R p.2220
. . . . . . g.57428
GCTCTGGAGAAGGAGCGGCTACACAGCCCAGGTGCAACCAGCACAGCAGAACTGGGGTCC c.6720
A L E K E R L H S P G A T S T A E L G S p.2240
. . . | 32 . . . g.57671
AGAGGGGAGCAGGGTGTGCAGCTGGGAGAG | GTCTCAGGAGTGGAGGCTGAGCCTAGTCCT c.6780
R G E Q G V Q L G E | V S G V E A E P S P p.2260
. . . . . . g.57731
GATGGAATGGAGAAGCAGTCATGGAGACAAAGGCTTGAACACCTGCAGCAAGCAGTGGCC c.6840
D G M E K Q S W R Q R L E H L Q Q A V A p.2280
. . . . . . g.57791
CGGCTGGAGATTGACAGGAGCAGGCTGCAGCGCCACAATGTCCAGCTGCGGAGTACCTTG c.6900
R L E I D R S R L Q R H N V Q L R S T L p.2300
| 33 . . . . . . g.58603
GAGCAG | GTGGAGCGAGAACGGAGGAAGCTGAAGAGGGAGGCCATGCGTGCGGCCCAGGCA c.6960
E Q | V E R E R R K L K R E A M R A A Q A p.2320
. . . . | 34 . g.59616
GGGTCCCTAGAGATCAGCAAGGCCACGGCTTCTTCACCCACACAGCAG | GATGGGAGAGGA c.7020
G S L E I S K A T A S S P T Q Q | D G R G p.2340
. . . . | 35 . . g.60984
CAGAAGAACTCAGATGCCAAGTGTGTGGCTGAACTGCAGAAAGAG | GTGGTCCTGCTGCAA c.7080
Q K N S D A K C V A E L Q K E | V V L L Q p.2360
. . . . . . g.61044
GCTCAGCTGACTTTGGAGCGGAAGCAGAAGCAGGACTACATCACCCGCTCAGCACAGACC c.7140
A Q L T L E R K Q K Q D Y I T R S A Q T p.2380
. . . . . . g.61104
AGCCGTGAGCTAGCAGGCCTGCACCACAGCCTCTCACACTCACTTCTTGCCGTGGCCCAG c.7200
S R E L A G L H H S L S H S L L A V A Q p.2400
. . . . . . g.61164
GCCCCTGAGGCCACTGTCCTGGAGGCAGAGACCCGCAGGCTGGATGAGTCCCTGACTCAA c.7260
A P E A T V L E A E T R R L D E S L T Q p.2420
. . . . . . g.61224
AGTCTGACATCCCCAGGGCCAGTCCTGCTACACCCCAGCCCCAGCACTACCCAAGCCGCC c.7320
S L T S P G P V L L H P S P S T T Q A A p.2440
g.61233
TCCAGGTAG c.7329
S R X p.2442
. . . . . . g.61293
cagccacagccaggagcacacagacagaagactgtgtcatgggtcatggcccctccgcac c.*60
. . . . . . g.61353
acctacaggtttgccaaaggaaaagcctggctctgttaggcacccaggagccccaggtcg c.*120
. . . . . . g.61413
gcgggtgttcccaggaagaggaagtaaatctgcaaccctggggaggaccccaactcacct c.*180
. . . . . . g.61473
gggaatgaggcaaattgcatttgcttgctccctatggaatcacccagaggggtgccttgc c.*240
. . . . . . g.61533
cctggctgagggacatgtactgcctctcatctagaatttattttcctagcacttcaccac c.*300
. . . . g.61581
ctccttcatcttctccttcaacaataaaccctgagatctttgcattca c.*348
(downstream sequence)
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