(used for variant description)
(last modified October 27, 2021)
This file was created to facilitate the description of sequence variants on transcript NM_016929.4 in the CLIC5 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000006.11, covering CLIC5 transcript NM_016929.4.
(upstream sequence)
. . . . g.69506
attttgggcgcgttggcggcggcgggatcgctgacagtcgcggatcc c.-301
. . . . . . g.69566
tgtgacacctccgggcagcccggcacttgttgctcccacgacctgttgtcattcccttaa c.-241
. . . . . . g.69626
cccggctttccccgtggccccccgcctcctcccggcttcgctccttttcatgtgagcatc c.-181
. . . . . . g.69686
tgggacactgatctctcagaccccgctgctcgggctggagaatagatggttttgtgaaaa c.-121
. . . . . . g.69746
attaaacaccgccctgaagaggagccccgctgggcagcggcaggagcgcagagtgctggc c.-61
. . . . . . g.69806
ccaggtgctgcagaggtggcgcctccccggcccgggacggtagccccgggcgccaacggc c.-1
. . . . . . g.69866
ATGACAGACTCGGCGACAGCTAACGGGGACGACAGGGACCCCGAGATCGAGCTCTTTGTG c.60
M T D S A T A N G D D R D P E I E L F V p.20
| 02 . . . . . . g.130161
AAG | GCTGGAATCGATGGAGAAAGCATCGGCAACTGTCCTTTCTCTCAGCGCCTCTTCATG c.120
K | A G I D G E S I G N C P F S Q R L F M p.40
. . . . . | 03 . g.135974
ATCCTCTGGCTGAAAGGAGTCGTGTTCAATGTCACCACTGTGGATCTGAAAAG | AAAGCCA c.180
I L W L K G V V F N V T T V D L K R | K P p.60
. . . . . . g.136034
GCTGACCTGCACAACCTAGCCCCCGGCACGCACCCGCCCTTCCTGACCTTCAACGGGGAC c.240
A D L H N L A P G T H P P F L T F N G D p.80
. . . . . | 04 g.143696
GTGAAGACAGACGTCAATAAGATCGAGGAGTTCCTGGAGGAGACCTTGACCCCTGAAAA | G c.300
V K T D V N K I E E F L E E T L T P E K | p.100
. . . . . . g.143756
TACCCCAAACTGGCTGCAAAACACCGGGAATCCAACACAGCGGGCATCGACATCTTTTCC c.360
Y P K L A A K H R E S N T A G I D I F S p.120
. . . . | 05 . . g.170953
AAGTTTTCTGCCTACATCAAAAATACCAAGCAGCAGAACAATGCTG | CTCTTGAAAGAGGC c.420
K F S A Y I K N T K Q Q N N A A | L E R G p.140
. . . . . . g.171013
CTAACCAAGGCTCTAAAGAAATTGGATGACTACCTGAACACCCCTCTACCAGAGGAGATT c.480
L T K A L K K L D D Y L N T P L P E E I p.160
. . . . . . g.171073
GACGCCAACACTTGTGGGGAAGACAAGGGGTCCCGGCGCAAGTTCCTGGATGGGGATGAG c.540
D A N T C G E D K G S R R K F L D G D E p.180
. . . . | 06 . g.182105
CTGACCCTGGCTGACTGCAATCTGTTGCCCAAGCTCCATGTGGTCAAG | ATTGTGGCCAAG c.600
L T L A D C N L L P K L H V V K | I V A K p.200
. . . . . . g.182165
AAATACCGCAACTATGATATCCCGGCTGAGATGACAGGCCTGTGGCGGTACCTCAAGAAC c.660
K Y R N Y D I P A E M T G L W R Y L K N p.220
. . . . . . g.182225
GCCTATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATCGAGTTGGCC c.720
A Y A R D E F T N T C A A D S E I E L A p.240
. . . g.182261
TACGCTGATGTCGCCAAACGCCTCAGCCGATCCTGA c.756
Y A D V A K R L S R S X p.251
. . . . . . g.182321
gcacagccattttgccccatccccgctgcagaaggactcaaccactcccctaagactcca c.*60
. . . . . . g.182381
gcttcatagactcctctgtatcactgccttgaggcgcactttttataatcaagcctcatc c.*120
. . . . . . g.182441
ttgctggtatcatgggaactccagcctgctatctttcatgaaggtcagcaccatccctgg c.*180
. . . . . . g.182501
cctcctcacataggaatctagcagaaatgatagacacagtccacctttcggccggccagc c.*240
. . . . . . g.182561
ctgatctgggctcagcatgtttggggtcagtcagtgttggagagcccacatatgggattg c.*300
. . . . . . g.182621
ccactagcttcttctgccaatatcaaaataccttctcagatgctttagaaacatgcaaca c.*360
. . . . . . g.182681
ccaactccttttctaccctcctctccgtccatacctacaaggccaaggacaaacgccatc c.*420
. . . . . . g.182741
ttcatccttcttagaaagagatctattaccccattaggggagacagagagagtgaatgga c.*480
. . . . . . g.182801
ggagtaccgagctggctatggacttgggtgtctggcaaacacagcttcagtctcactact c.*540
. . . . . . g.182861
tctgacactctggttattgggcactaagggccagactggaaagtcacttgagacacattc c.*600
. . . . . . g.182921
tcagtttgttgcagtgccaggaatgctgcgctgctgctgctgcgcacctggcccatgctg c.*660
. . . . . . g.182981
tccctggcttccatgccgtccaggccctgccagaaaaggaaattggcatgcaattctaaa c.*720
. . . . . . g.183041
ctgcagtgactgggatgggaggggaggggagcagtgttgatgccaaaatacccacggggt c.*780
. . . . . . g.183101
ctaccagccatggggtttgcttgcttaggagtagttgtttcagaggtgattacaggcctg c.*840
. . . . . . g.183161
ggtttgactgtgcttaccaatgagtggtttttgagctatgagaaagtggatgggagtggg c.*900
. . . . . . g.183221
aggaggagagatgggtgaagacaaaagagttctttatgagcctcgatgttccctggtaaa c.*960
. . . . . . g.183281
cttttaaaaaggccttctctcatgatctaagtcttggactggtggcatcatgtaactgct c.*1020
. . . . . . g.183341
aaccttacagtaaaaacccaagaatgggtcaaaaatgtcttcccagtttctccaagctgc c.*1080
. . . . . . g.183401
ttctggaatgcaggtctgtcggctgggtgctctccagcagctgctcctgcctgattcaac c.*1140
. . . . . . g.183461
tgtagcctgtaatgggtaaaagccacatttaggaggtggtctgatcatagaacaccttag c.*1200
. . . . . . g.183521
gaagaaagtccatgagactttctgactaggaaaccatgtggtttgaacttgaagaaaaat c.*1260
. . . . . . g.183581
gtagacccatctgggttaattttcctacaatctgactcaactgccaggtgaaaaaaaaaa c.*1320
. . . . . . g.183641
ggaaaaatttttaagctaatatttcactcttttgtcattctccttaagtttcatctccta c.*1380
. . . . . . g.183701
aaaagcttacccagcctgagcttggggacctgtgcagaggaaactaagaaaaatgcactc c.*1440
. . . . . . g.183761
atcaactccttctcccagtgaacgcccggtgagaaaatccatttgccacaggcccttacc c.*1500
. . . . . . g.183821
ttcaacaatcccccttctatagtgttcgctggtaaagggtgaggctcccaagtgctggaa c.*1560
. . . . . . g.183881
agcccctggacttggctcatttctcagcaagggcaggatagcacgggtcctttccataga c.*1620
. . . . . . g.183941
aatatcaacaaattctaacccaagcaatccctggacctacctgcctccagggatctctga c.*1680
. . . . . . g.184001
agaaaaaaagtaacccattgatcaaatcagaggagaggaagcaggaggtctcctagagcc c.*1740
. . . . . . g.184061
cattgaggaagaggaactttctcagtaggacactttataagcctgagaaagctttgaaaa c.*1800
. . . . . . g.184121
ggcggaatgagttgattcatttccacctcaaaaggaacctttccaggtccccctggaaat c.*1860
. . . . . . g.184181
tgtgccctggagatgtttaacaaggagaactggtgaggaaagagtccttttttactgtag c.*1920
. . . . . . g.184241
ggaaaagccccaaactggcctcctgggggatgagggctgaaatgatcccgaaggcctttt c.*1980
. . . . . . g.184301
aattagtgtgaaatcctgctgtactcagaaatccttccccgaatttacagcacaggcagg c.*2040
. . . . . . g.184361
atgacctaagaggcagtttacttccctgagacccacagttgggctgttctggaaacacat c.*2100
. . . . . . g.184421
ctgtgaatcatagccaattgccacagagaaaacagaaccaagcctccggtgaggccactc c.*2160
. . . . . . g.184481
caccccagagaagtctgcagaattccaaggactcggattggatgttcagaattcagcaac c.*2220
. . . . . . g.184541
tggaaagtccttaaaaacaaacaggccaaaccaaatcaatattgctgtttctagatgtcc c.*2280
. . . . . . g.184601
cttctgtggttgagctagttttacagagataaatatattaagacaaggaggtgggggtgt c.*2340
. . . . . . g.184661
tatatgatcaatgatagccatttgaaagagagggaggagtacagaaggaaggcacttctg c.*2400
. . . . . . g.184721
ggtacttaattcagaaatttctttatatttcagcactggattatcatataatgcaagtga c.*2460
. . . . . . g.184781
ctatggactaagagttagttatggtgtcttatgactagatttattatggtatattaaagt c.*2520
. . . . . . g.184841
aacaataatattaatattaccttcctttttttttttgtttcaaaagagatctttctccag c.*2580
. . . . . . g.184901
atgcttcagcctgtctggccttcttatcatatgtgcagcacatcatgtctcagcaacagt c.*2640
. . . . . . g.184961
gtggtgaggtccttaggtgtcccaagaacaactcagggagcacgggagggtctgcagttg c.*2700
. . . . . . g.185021
ggaccccacaactatacagctatagggtaggaggcttccttttcattggtcctgaatgaa c.*2760
. . . . . . g.185081
tacaaatcgctcagaaagcattttggtggcacagaaaggggatgtatttgtgttgagatc c.*2820
. . . . . . g.185141
ttattttattttgtatttatttatcttctttgacttgcacagcactattgggggtggggg c.*2880
. . . . . . g.185201
aagcagggtagtgggagacgaaggcagaagcaagagtcaaactcagaatgactgagttga c.*2940
. . . . . . g.185261
attcactgtctagtcagcaatgcctgcttctgagtttggcccagagagaaggtattgagt c.*3000
. . . . . . g.185321
aagattttaataactgtaaaaagtaagctggataagtaaaatcatgatggatccaaagca c.*3060
. . . . . . g.185381
cagtttcttcatctcctgataaagaaagtcaaatgcttgataaattcagagtcacagatg c.*3120
. . . . . . g.185441
tgagcatagctatattcttttaaacgagaggtagagtgacctagcactaagcaaatgagc c.*3180
. . . . . . g.185501
tgaaatgtcggaaacagagtccatcagcttatttggccacacgatcccaaactagtttta c.*3240
. . . . . . g.185561
tcttgggaaatggccctgtcctcagcattcccttcttgtgctggtggggccagtgaagtc c.*3300
. . . . . . g.185621
ttgatcttatcagaaaaaggccacaccaagtgcgagttttcccaggctgactttccaggc c.*3360
. . . . . . g.185681
ccttatcaaatgaaacaacagaagctcttcacagttctgtgccccatggccactccacag c.*3420
. . . . . . g.185741
acagacaataccaagcatcttagaactgtcataagataggtcatgcctgaaatagatctt c.*3480
. . . . . . g.185801
gaccatatgagagtcccagaaatcagcaaggcctggacaaatagaactaagagagaggca c.*3540
. . . . . . g.185861
gaggcaggaagctgcgggtctatcttgtaaagagtttagcatcactgtgagagtgtgtgt c.*3600
. . . . . . g.185921
ctaaaattaaattaaactagaagcagcaggtgagtatttggtaagtacttctgtgactcg c.*3660
. . . . . . g.185981
cctcaattcccactggccaggggccatctcaactgcacggtgaatcaagatgctggtgtc c.*3720
. . . . . . g.186041
atcctccttggaaaaaggaaatgttaactcatggttaaaactaagtacaatgattcccaa c.*3780
. . . . . . g.186101
gggatcactttcttatttttttaaatgacattaaggagaatcttaagaaagcatcagaga c.*3840
. . . . . . g.186161
aagacatgtgcatgtgaagcaccctgattctgatgttaggaaaacttaagcgaacaggac c.*3900
. . . . . . g.186221
ctgctgcacacagccccattgtcttctatccatttctctttatcattcaaatcaagcaac c.*3960
. . . . . . g.186281
atgtgccctcctcatcaacacacattcttcccctttgtcagtatgcatctcccagcttag c.*4020
. . . . . . g.186341
tgtcaggatactttcgattcataattatgtatgatccaaagtgtgcataatttcatttaa c.*4080
. . . . . . g.186401
cgttaaagaaatagatccaattcctttcttgcaaccaaaaataaataaaatacgttgcct c.*4140
. . . . . . g.186461
caatataaggtttgggctattctgtgtttctatagaagcaatctgtttttggtaaaatgt c.*4200
. . . . . . g.186521
acttttaaggatccagtcatctgaagtattttatgtagagttagagatttcacaatattg c.*4260
. . . . . . g.186581
actatacatatatttaaaatataaattatccagctgatgtttgaatttgtcttactttcc c.*4320
. . . . . . g.186641
tggccacctcgttgtcctattttataagctggggagttaactagcttaacaaaagatgct c.*4380
. . . . . . g.186701
tagcttttgtaaaagaacaagtgtttcattttacaaagacactccaaatgatagttactt c.*4440
. . . . . . g.186761
gattttctcgagacctttaactatggtgatgaataacaggacttgctttcaagccttaat c.*4500
. . . . . . g.186821
aaatgtaaaatgccttttaatgaagatacagctgagtgttttcctcatgaatctgaacca c.*4560
. . . . . . g.186881
attaccaatttgtgttccagtcttgattggtattgactgattcaaataaagttggtttat c.*4620
. g.186898
tttcaaatattacaaaa c.*4637
(downstream sequence)
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