(used for variant description)
(last modified May 25, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_000094.3 in the COL7A1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_007065.1, covering COL7A1 transcript NM_000094.3.
(upstream sequence)
g.5093
g c.-1
. . . . . . g.5153
ATGACGCTGCGGCTTCTGGTGGCCGCGCTCTGCGCCGGGATCCTGGCAGAGGCGCCCCGA c.60
M T L R L L V A A L C A G I L A E A P R p.20
. . | 02 . . . . g.5739
GTGCGAGCCCAGCACAGGGAGAGAG | TGACCTGCACGCGCCTTTACGCCGCTGACATTGTG c.120
V R A Q H R E R V | T C T R L Y A A D I V p.40
. . . . . . g.5799
TTCTTACTGGATGGCTCCTCATCCATTGGCCGCAGCAATTTCCGCGAGGTCCGCAGCTTT c.180
F L L D G S S S I G R S N F R E V R S F p.60
. . . . . . g.5859
CTCGAAGGGCTGGTGCTGCCTTTCTCTGGAGCAGCCAGTGCACAGGGTGTGCGCTTTGCC c.240
L E G L V L P F S G A A S A Q G V R F A p.80
. . | 03 . . . . g.6590
ACAGTGCAGTACAGCGATGACCCACG | GACAGAGTTCGGCCTGGATGCACTTGGCTCTGGG c.300
T V Q Y S D D P R | T E F G L D A L G S G p.100
. . . . . . g.6650
GGTGATGTGATCCGCGCCATCCGTGAGCTTAGCTACAAGGGGGGCAACACTCGCACAGGG c.360
G D V I R A I R E L S Y K G G N T R T G p.120
. . . . . . g.6710
GCTGCAATTCTCCATGTGGCTGACCATGTCTTCCTGCCCCAGCTGGCCCGACCTGGTGTC c.420
A A I L H V A D H V F L P Q L A R P G V p.140
| 04 . . . . . . g.6857
CCCAAG | GTCTGCATCCTGATCACAGACGGGAAGTCCCAGGACCTGGTGGACACAGCTGCC c.480
P K | V C I L I T D G K S Q D L V D T A A p.160
. . . . | 05 . . g.7009
CAAAGGCTGAAGGGGCAGGGGGTCAAGCTATTTGCTGTGG | GGATCAAGAATGCTGACCCT c.540
Q R L K G Q G V K L F A V G | I K N A D P p.180
. . . . . . g.7069
GAGGAGCTGAAGCGAGTTGCCTCACAGCCCACCAGTGACTTCTTCTTCTTCGTCAATGAC c.600
E E L K R V A S Q P T S D F F F F V N D p.200
. . . . . . g.7129
TTCAGCATCTTGAGGACACTACTGCCCCTCGTTTCCCGGAGAGTGTGCACGACTGCTGGT c.660
F S I L R T L L P L V S R R V C T T A G p.220
. . | 06 . . . . g.7352
GGCGTGCCTGTGACCCGACCTC | CGGATGACTCGACCTCTGCTCCACGAGACCTGGTGCTG c.720
G V P V T R P P | D D S T S A P R D L V L p.240
. . . . . . g.7412
TCTGAGCCAAGCAGCCAATCCTTGAGAGTACAGTGGACAGCGGCCAGTGGCCCTGTGACT c.780
S E P S S Q S L R V Q W T A A S G P V T p.260
. . . . . . g.7472
GGCTACAAGGTCCAGTACACTCCTCTGACGGGGCTGGGACAGCCACTGCCGAGTGAGCGG c.840
G Y K V Q Y T P L T G L G Q P L P S E R p.280
| 07 . . . . . . g.7607
CAGGAG | GTGAACGTCCCAGCTGGTGAGACCAGTGTGCGGCTGCGGGGTCTCCGGCCACTG c.900
Q E | V N V P A G E T S V R L R G L R P L p.300
. . . . . . g.7667
ACCGAGTACCAAGTGACTGTGATTGCCCTCTACGCCAACAGCATCGGGGAGGCTGTGAGC c.960
T E Y Q V T V I A L Y A N S I G E A V S p.320
. | 08 . . . . . g.7829
GGGACAGCTCGGACCA | CTGCCCTAGAAGGGCCGGAACTGACCATCCAGAATACCACAGCC c.1020
G T A R T T | A L E G P E L T I Q N T T A p.340
. . . . . . g.7889
CACAGCCTCCTGGTGGCCTGGCGGAGTGTGCCAGGTGCCACTGGCTACCGTGTGACATGG c.1080
H S L L V A W R S V P G A T G Y R V T W p.360
. | 09 . . . . . g.8051
CGGGTCCTCAGTG | GTGGGCCCACACAGCAGCAGGAGCTGGGCCCTGGGCAGGGTTCAGTG c.1140
R V L S G | G P T Q Q Q E L G P G Q G S V p.380
. . . . . . g.8111
TTGCTGCGTGACTTGGAGCCTGGCACGGACTATGAGGTGACCGTGAGCACCCTATTTGGC c.1200
L L R D L E P G T D Y E V T V S T L F G p.400
. . . . | 10 . . g.8258
CGCAGTGTGGGGCCCGCCACTTCCCTGATGGCTCGCACTG | ACGCTTCTGTTGAGCAGACC c.1260
R S V G P A T S L M A R T D | A S V E Q T p.420
. . . . . . g.8318
CTGCGCCCGGTCATCCTGGGCCCCACATCCATCCTCCTTTCCTGGAACTTGGTGCCTGAG c.1320
L R P V I L G P T S I L L S W N L V P E p.440
. . . | 11. . . g.8453
GCCCGTGGCTACCGGTTGGAATGGCGGCGTGAGACTG | GCTTGGAGCCACCGCAGAAGGTG c.1380
A R G Y R L E W R R E T G | L E P P Q K V p.460
. . . . . . g.8513
GTACTGCCCTCTGATGTGACCCGCTACCAGTTGGATGGGCTGCAGCCGGGCACTGAGTAC c.1440
V L P S D V T R Y Q L D G L Q P G T E Y p.480
. . . . . . g.8573
CGCCTCACACTCTACACTCTGCTGGAGGGCCACGAGGTGGCCACCCCTGCAACCGTGGTT c.1500
R L T L Y T L L E G H E V A T P A T V V p.500
| 12. . . . . . g.8713
CCCACTG | GACCAGAGCTGCCTGTGAGCCCTGTAACAGACCTGCAAGCCACCGAGCTGCCC c.1560
P T G | P E L P V S P V T D L Q A T E L P p.520
. . . . . . g.8773
GGGCAGCGGGTGCGAGTGTCCTGGAGCCCAGTCCCTGGTGCCACCCAGTACCGCATCATT c.1620
G Q R V R V S W S P V P G A T Q Y R I I p.540
. | 13 . . . . . g.9480
GTGCGCAGCACCCAGG | GGGTTGAGCGGACCCTGGTGCTTCCTGGGAGTCAGACAGCATTC c.1680
V R S T Q G | V E R T L V L P G S Q T A F p.560
. . . . . . g.9540
GACTTGGATGACGTTCAGGCTGGGCTTAGCTACACTGTGCGGGTGTCTGCTCGAGTGGGT c.1740
D L D D V Q A G L S Y T V R V S A R V G p.580
. . . . | 14 . . g.9688
CCCCGTGAGGGCAGTGCCAGTGTCCTCACTGTCCGCCGGG | AGCCGGAAACTCCACTTGCT c.1800
P R E G S A S V L T V R R E | P E T P L A p.600
. . . . . . g.9748
GTTCCAGGGCTGCGGGTTGTGGTGTCAGATGCAACGCGAGTGAGGGTGGCCTGGGGACCC c.1860
V P G L R V V V S D A T R V R V A W G P p.620
. . . . | 15 . . g.9910
GTCCCTGGAGCCAGTGGATTTCGGATTAGCTGGAGCACAGGCAGTG | GTCCGGAGTCCAGC c.1920
V P G A S G F R I S W S T G S G | P E S S p.640
. . . . . . g.9970
CAGACACTGCCCCCAGACTCTACTGCCACAGACATCACAGGGCTGCAGCCTGGAACCACC c.1980
Q T L P P D S T A T D I T G L Q P G T T p.660
. . . . . . g.10030
TACCAGGTGGCTGTGTCGGTACTGCGAGGCAGAGAGGAGGGCCCTGCTGCAGTCATCGTG c.2040
Y Q V A V S V L R G R E E G P A A V I V p.680
. | 16 . . . . . g.10584
GCTCGAACGG | ACCCACTGGGCCCAGTGAGGACGGTCCATGTGACTCAGGCCAGCAGCTCA c.2100
A R T D | P L G P V R T V H V T Q A S S S p.700
. . . . . . g.10644
TCTGTCACCATTACCTGGACCAGGGTTCCTGGCGCCACAGGATACAGGGTTTCCTGGCAC c.2160
S V T I T W T R V P G A T G Y R V S W H p.720
. | 17 . . . . . g.10832
TCAGCCCACG | GCCCAGAGAAATCCCAGTTGGTTTCTGGGGAGGCCACGGTGGCTGAGCTG c.2220
S A H G | P E K S Q L V S G E A T V A E L p.740
. . . . . . g.10892
GATGGACTGGAGCCAGATACTGAGTATACGGTGCATGTGAGGGCCCATGTGGCTGGCGTG c.2280
D G L E P D T E Y T V H V R A H V A G V p.760
. . . | 18 . . . g.11283
GATGGGCCCCCTGCCTCTGTGGTTGTGAGGACTG | CCCCTGAGCCTGTGGGTCGTGTGTCG c.2340
D G P P A S V V V R T A | P E P V G R V S p.780
. . . . . . g.11343
AGGCTGCAGATCCTCAATGCTTCCAGCGACGTTCTACGGATCACCTGGGTAGGGGTCACT c.2400
R L Q I L N A S S D V L R I T W V G V T p.800
. . . . | 19 . . g.11484
GGAGCCACAGCTTACAGACTGGCCTGGGGCCGGAGTGAAG | GCGGCCCCATGAGGCACCAG c.2460
G A T A Y R L A W G R S E G | G P M R H Q p.820
. . . . . . g.11544
ATACTCCCAGGAAACACAGACTCTGCAGAGATCCGGGGTCTCGAAGGTGGAGTCAGCTAC c.2520
I L P G N T D S A E I R G L E G G V S Y p.840
. . . . . . g.11604
TCAGTGCGAGTGACTGCACTTGTCGGGGACCGCGAGGGCACACCTGTCTCCATTGTTGTC c.2580
S V R V T A L V G D R E G T P V S I V V p.860
| 20. . . . . . g.11901
ACTACGC | CGCCTGAGGCTCCGCCAGCCCTGGGGACGCTTCACGTGGTGCAGCGCGGGGAG c.2640
T T P | P E A P P A L G T L H V V Q R G E p.880
. . . . . . g.11961
CACTCGCTGAGGCTGCGCTGGGAGCCGGTGCCCAGAGCGCAGGGCTTCCTTCTGCACTGG c.2700
H S L R L R W E P V P R A Q G F L L H W p.900
. | 21 . . . . . g.12363
CAACCTGAGG | GTGGCCAGGAACAGTCCCGGGTCCTGGGGCCCGAGCTCAGCAGCTATCAC c.2760
Q P E G | G Q E Q S R V L G P E L S S Y H p.920
. . . . . . g.12423
CTGGACGGGCTGGAGCCAGCGACACAGTACCGCGTGAGGCTGAGTGTCCTAGGGCCAGCT c.2820
L D G L E P A T Q Y R V R L S V L G P A p.940
. . . | 22. . . g.12721
GGAGAAGGGCCCTCTGCAGAGGTGACTGCGCGCACTG | AGTCACCTCGTGTTCCAAGCATT c.2880
G E G P S A E V T A R T E | S P R V P S I p.960
. . . . . . g.12781
GAACTACGTGTGGTGGACACCTCGATCGACTCGGTGACTTTGGCCTGGACTCCAGTGTCC c.2940
E L R V V D T S I D S V T L A W T P V S p.980
. . . . . | 23 . g.12924
AGGGCATCCAGCTACATCCTATCCTGGCGGCCACTCAGAGGCCCTGGCCAGG | AAGTGCCT c.3000
R A S S Y I L S W R P L R G P G Q E | V P p.1000
. . . . . . g.12984
GGGTCCCCGCAGACACTTCCAGGGATCTCAAGCTCCCAGCGGGTGACAGGGCTAGAGCCT c.3060
G S P Q T L P G I S S S Q R V T G L E P p.1020
. . . . . . g.13044
GGCGTCTCTTACATCTTCTCCCTGACGCCTGTCCTGGATGGTGTGCGGGGTCCTGAGGCA c.3120
G V S Y I F S L T P V L D G V R G P E A p.1040
. | 24 . . . . g.13185
TCTGTCACACAGACGCCAG | TGTGCCCCCGTGGCCTGGCGGATGTGGTGTTCCTACCACAT c.3180
S V T Q T P V | C P R G L A D V V F L P H p.1060
. . . . . . g.13245
GCCACTCAAGACAATGCTCACCGTGCGGAGGCTACGAGGAGGGTCCTGGAGCGTCTGGTG c.3240
A T Q D N A H R A E A T R R V L E R L V p.1080
. . . | 25 . . . g.13587
TTGGCACTTGGGCCTCTTGGGCCACAGGCAGTTCAG | GTTGGCCTGCTGTCTTACAGTCAT c.3300
L A L G P L G P Q A V Q | V G L L S Y S H p.1100
. . . . . . g.13647
CGGCCCTCCCCACTGTTCCCACTGAATGGCTCCCATGACCTTGGCATTATCTTGCAAAGG c.3360
R P S P L F P L N G S H D L G I I L Q R p.1120
. . . . | 26 . . g.13791
ATCCGTGACATGCCCTACATGGACCCAAGTGGGAACAACCTGG | GCACAGCCGTGGTCACA c.3420
I R D M P Y M D P S G N N L G | T A V V T p.1140
. . . . . . g.13851
GCTCACAGATACATGTTGGCACCAGATGCTCCTGGGCGCCGCCAGCACGTACCAGGGGTG c.3480
A H R Y M L A P D A P G R R Q H V P G V p.1160
. . . . . . g.13911
ATGGTTCTGCTAGTGGATGAACCCTTGAGAGGTGACATATTCAGCCCCATCCGTGAGGCC c.3540
M V L L V D E P L R G D I F S P I R E A p.1180
. | 27 . . . . . g.14056
CAGGCTTCTG | GGCTTAATGTGGTGATGTTGGGAATGGCTGGAGCGGACCCAGAGCAGCTG c.3600
Q A S G | L N V V M L G M A G A D P E Q L p.1200
. . . . . . g.14116
CGTCGCTTGGCGCCGGGTATGGACTCTGTCCAGACCTTCTTCGCCGTGGATGATGGGCCA c.3660
R R L A P G M D S V Q T F F A V D D G P p.1220
. . . . . . g.14176
AGCCTGGACCAGGCAGTCAGTGGTCTGGCCACAGCCCTGTGTCAGGCATCCTTCACTACT c.3720
S L D Q A V S G L A T A L C Q A S F T T p.1240
| 28 . . . | 29 . . g.14417
CAG | CCCCGGCCAGAGCCCTGCCCAGTGTATTGTCCAAAG | GGCCAGAAGGGGGAACCTGGA c.3780
Q | P R P E P C P V Y C P K | G Q K G E P G p.1260
| 30 . . . . . | 31 . g.14642
GAGATG | GGCCTGAGAGGACAAGTTGGGCCTCCTGGCGACCCTGGCCTCCCG | GGCAGGACC c.3840
E M | G L R G Q V G P P G D P G L P | G R T p.1280
. . . . . | 32 . g.15142
GGTGCTCCCGGCCCCCAGGGGCCCCCTGGAAGTGCCACTGCCAAGGGCGAGAGG | GGCTTC c.3900
G A P G P Q G P P G S A T A K G E R | G F p.1300
. . . . . . g.15202
CCTGGAGCAGATGGGCGTCCAGGCAGCCCTGGCCGCGCCGGGAATCCTGGGACCCCTGGA c.3960
P G A D G R P G S P G R A G N P G T P G p.1320
. | 33 . . . . | 34 . g.15492
GCCCCTGGCCTAAAG | GGCTCTCCAGGGTTGCCTGGCCCTCGTGGGGACCCG | GGAGAGCGA c.4020
A P G L K | G S P G L P G P R G D P | G E R p.1340
. . | 35. . . . g.15729
GGACCTCGAGGCCCAAAGGGGGAGCCG | GGGGCTCCCGGACAAGTCATCGGAGGTGAAGGA c.4080
G P R G P K G E P | G A P G Q V I G G E G p.1360
. . . | 36 . . g.15898
CCTGGGCTTCCTGGGCGGAAAGGGGACCCTGGACCATCG | GGCCCCCCTGGACCTCGTGGA c.4140
P G L P G R K G D P G P S | G P P G P R G p.1380
. . . . . | 37. g.16194
CCACTGGGGGACCCAGGACCCCGTGGCCCCCCAGGGCTTCCTGGAACAGCCATGAAG | GGT c.4200
P L G D P G P R G P P G L P G T A M K | G p.1400
. . | 38 . . . . g.16335
GACAAAGGCGATCGTGGGGAGCGG | GGTCCCCCTGGACCAGGTGAAGGTGGCATTGCTCCT c.4260
D K G D R G E R | G P P G P G E G G I A P p.1420
. | 39 . . . . g.16514
GGGGAGCCTGGGCTGCCG | GGTCTTCCCGGAAGCCCTGGACCCCAAGGCCCCGTTGGCCCC c.4320
G E P G L P | G L P G S P G P Q G P V G P p.1440
. . | 40 . . . . g.16676
CCTGGAAAGAAAGGAGAAAAA | GGTGACTCTGAGGATGGAGCTCCAGGCCTCCCAGGACAA c.4380
P G K K G E K | G D S E D G A P G L P G Q p.1460
. . | 41 . . . | 42. g.17084
CCTGGGTCTCCGGGTGAGCAG | GGCCCACGGGGACCTCCTGGAGCTATTGGCCCCAAA | GGT c.4440
P G S P G E Q | G P R G P P G A I G P K | G p.1480
. . . . | 43 . . g.17222
GACCGGGGCTTTCCAGGGCCCCTGGGTGAGGCTGGAGAGAAG | GGCGAACGTGGACCCCCA c.4500
D R G F P G P L G E A G E K | G E R G P P p.1500
. | 44 . . . . g.17641
GGCCCAGCGGGATCCCGG | GGGCTGCCAGGGGTTGCTGGACGTCCTGGAGCCAAGGGTCCT c.4560
G P A G S R | G L P G V A G R P G A K G P p.1520
| 45 . . . | 46 . . g.17915
GAA | GGGCCACCAGGACCCACTGGCCGCCAAGGAGAGAAG | GGGGAGCCTGGTCGCCCTGGG c.4620
E | G P P G P T G R Q G E K | G E P G R P G p.1540
. | 47 . . . | 48 . g.18505
GACCCTGCAGTGGTG | GGACCTGCTGTTGCTGGACCCAAAGGAGAAAAG | GGAGATGTGGGG c.4680
D P A V V | G P A V A G P K G E K | G D V G p.1560
. . . . | 49 . . g.18638
CCCGCTGGGCCCAGAGGAGCTACCGGAGTCCAAGGGGAACGG | GGCCCACCCGGCTTGGTT c.4740
P A G P R G A T G V Q G E R | G P P G L V p.1580
. . . . | 50 . . g.18787
CTTCCTGGAGACCCTGGCCCCAAGGGAGACCCTGGAGACCGG | GGTCCCATTGGCCTTACT c.4800
L P G D P G P K G D P G D R | G P I G L T p.1600
. | 51 . . . . g.18954
GGCAGAGCAGGACCCCCA | GGTGACTCAGGGCCTCCTGGAGAGAAGGGAGACCCTGGGCGG c.4860
G R A G P P | G D S G P P G E K G D P G R p.1620
. . . | 52 . . g.19116
CCTGGCCCCCCAGGACCTGTTGGCCCCCGAGGACGAGAT | GGTGAAGTTGGAGAGAAAGGT c.4920
P G P P G P V G P R G R D | G E V G E K G p.1640
. | 53 . . . . . g.19371
GACGAGGGTCCTCCG | GGTGACCCGGGTTTGCCTGGAAAAGCAGGCGAGCGTGGCCTTCGG c.4980
D E G P P | G D P G L P G K A G E R G L R p.1660
| 54 . . . . . . g.19660
| GGGGCACCTGGAGTTCGGGGGCCTGTGGGTGAAAAGGGAGACCAGGGAGATCCTGGAGAG c.5040
| G A P G V R G P V G E K G D Q G D P G E p.1680
. | 55 . . . . | 56. g.20198
GATGGACGAAAT | GGCAGCCCTGGATCATCTGGACCCAAGGGTGACCGTGGGGAGCCG | GGT c.5100
D G R N | G S P G S S G P K G D R G E P | G p.1700
. . | 57 . . . | 58 . g.20590
CCCCCAGGACCCCCGGGACGGCTG | GTAGACACAGGACCTGGAGCCAGAGAGAAG | GGAGAG c.5160
P P G P P G R L | V D T G P G A R E K | G E p.1720
. . . . . . g.20650
CCTGGGGACCGCGGACAAGAGGGTCCTCGAGGGCCCAAGGGTGATCCTGGCCTCCCTGGA c.5220
P G D R G Q E G P R G P K G D P G L P G p.1740
. | 59 . . . . | 60 . g.20857
GCCCCTGGGGAAAGG | GGCATTGAAGGGTTTCGGGGACCCCCAGGCCCACAG | GGGGACCCA c.5280
A P G E R | G I E G F R G P P G P Q | G D P p.1760
. . | 61. . . . g.21008
GGTGTCCGAGGCCCAGCAGGAGAAAAG | GGTGACCGGGGTCCCCCTGGGCTGGATGGCCGG c.5340
G V R G P A G E K | G D R G P P G L D G R p.1780
. . . . | 62 . g.21310
AGCGGACTGGATGGGAAACCAGGAGCCGCTGGGCCCTCTGGGCCGAAT | GGTGCTGCAGGC c.5400
S G L D G K P G A A G P S G P N | G A A G p.1800
. . | 63 . . . . g.21773
AAAGCTGGGGACCCAGGGAGAGAC | GGGCTTCCAGGCCTCCGTGGAGAACAGGGCCTCCCT c.5460
K A G D P G R D | G L P G L R G E Q G L P p.1820
. . | 64. . . . g.21920
GGCCCCTCTGGTCCCCCTGGATTACCG | GGAAAGCCAGGCGAGGATGGCAAACCTGGCCTG c.5520
G P S G P P G L P | G K P G E D G K P G L p.1840
. | 65 . . . | 66 . g.23345
AATGGAAAAAAC | GGAGAACCTGGGGACCCTGGAGAAGACGGGAGGAAG | GGAGAGAAAGGA c.5580
N G K N | G E P G D P G E D G R K | G E K G p.1860
. . | 67 . . . . g.23517
GATTCAGGCGCCTCTGGGAGAGAA | GGTCGTGATGGCCCCAAGGGTGAGCGTGGAGCTCCT c.5640
D S G A S G R E | G R D G P K G E R G A P p.1880
. . . . . . g.23577
GGTATCCTTGGACCCCAGGGGCCTCCAGGCCTCCCAGGGCCAGTGGGCCCTCCTGGCCAG c.5700
G I L G P Q G P P G L P G P V G P P G Q p.1900
| 68 . . . | 69 . . . g.23841
| GGTTTTCCTGGTGTCCCAGGAGGCACGGGCCCCAAG | GGTGACCGTGGGGAGACTGGATCC c.5760
| G F P G V P G G T G P K | G D R G E T G S p.1920
. | 70 . . . . . g.24004
AAAGGGGAGCAG | GGCCTCCCTGGAGAGCGTGGCCTGCGAGGAGAGCCTGGAAGTGTGCCG c.5820
K G E Q | G L P G E R G L R G E P G S V P p.1940
| 71 . . . | 72 . . . g.24528
| AATGTGGATCGGTTGCTGGAAACTGCTGGCATCAAG | GCATCTGCCCTGCGGGAGATCGTG c.5880
| N V D R L L E T A G I K | A S A L R E I V p.1960
. . . . . . g.24588
GAGACCTGGGATGAGAGCTCTGGTAGCTTCCTGCCTGTGCCCGAACGGCGTCGAGGCCCC c.5940
E T W D E S S G S F L P V P E R R R G P p.1980
. . . | 73 . . g.24734
AAGGGGGACTCAGGCGAACAGGGCCCCCCAGGCAAGGAG | GGCCCCATCGGCTTTCCTGGA c.6000
K G D S G E Q G P P G K E | G P I G F P G p.2000
. . . . . . g.24794
GAACGCGGGCTGAAGGGCGACCGTGGAGACCCTGGCCCTCAGGGGCCACCTGGTCTGGCC c.6060
E R G L K G D R G D P G P Q G P P G L A p.2020
. . . . . . g.24854
CTTGGGGAGAGGGGCCCCCCCGGGCCTTCCGGCCTTGCCGGGGAGCCTGGAAAGCCTGGT c.6120
L G E R G P P G P S G L A G E P G K P G p.2040
. . . . . . g.24914
ATTCCCGGGCTCCCAGGCAGGGCTGGGGGTGTGGGAGAGGCAGGAAGGCCAGGAGAGAGG c.6180
I P G L P G R A G G V G E A G R P G E R p.2060
| 74 . . . | 75 . . . g.25150
| GGAGAACGGGGAGAGAAAGGAGAACGTGGAGAACAG | GGCAGAGATGGCCCTCCTGGACTC c.6240
| G E R G E K G E R G E Q | G R D G P P G L p.2080
. . . | 76 . . g.25408
CCTGGAACCCCTGGGCCCCCCGGACCCCCTGGCCCCAAG | GTGTCTGTGGATGAGCCAGGT c.6300
P G T P G P P G P P G P K | V S V D E P G p.2100
. . . . | 77 . g.25543
CCTGGACTCTCTGGAGAACAGGGACCCCCTGGACTCAAGGGTGCTAAG | GGGGAGCCGGGC c.6360
P G L S G E Q G P P G L K G A K | G E P G p.2120
. . . | 78 . . . g.25729
AGCAATGGTGACCAAGGTCCCAAAGGAGACAGG | GGTGTGCCAGGCATCAAAGGAGACCGG c.6420
S N G D Q G P K G D R | G V P G I K G D R p.2140
. . . | 79 . . . g.25970
GGAGAGCCTGGACCGAGGGGTCAGGACGGCAACCCG | GGTCTACCAGGAGAGCGTGGTATG c.6480
G E P G P R G Q D G N P | G L P G E R G M p.2160
. . | 80 . . . | 81. g.26530
GCTGGGCCTGAAGGGAAGCCG | GGTCTGCAGGGTCCAAGAGGCCCCCCTGGCCCAGTG | GGT c.6540
A G P E G K P | G L Q G P R G P P G P V | G p.2180
. . . | 82 . . . g.26722
GGTCATGGAGACCCTGGACCACCTGGTGCCCCG | GGTCTTGCTGGCCCTGCAGGACCCCAA c.6600
G H G D P G P P G A P | G L A G P A G P Q p.2200
. | 83 . . . | 84 . g.27025
GGACCTTCTGGCCTGAAG | GGGGAGCCTGGAGAGACAGGACCTCCAGGACGG | GGCCTGACT c.6660
G P S G L K | G E P G E T G P P G R | G L T p.2220
. . . . . | 85 . g.27202
GGACCTACTGGAGCTGTGGGACTTCCTGGACCCCCCGGCCCTTCAGGCCTTGTG | GGTCCA c.6720
G P T G A V G L P G P P G P S G L V | G P p.2240
. . . | 86 . . . g.27340
CAGGGGTCTCCAGGTTTGCCTGGACAAGTG | GGGGAGACAGGGAAGCCGGGAGCCCCAGGT c.6780
Q G S P G L P G Q V | G E T G K P G A P G p.2260
. . . . . | 87 . g.27522
CGAGATGGTGCCAGTGGAAAAGATGGAGACAGAGGGAGCCCTGGTGTGCCA | GGGTCACCA c.6840
R D G A S G K D G D R G S P G V P | G S P p.2280
. . . . . . g.27582
GGTCTGCCTGGCCCTGTCGGACCTAAAGGAGAACCTGGCCCCACGGGGGCCCCTGGACAG c.6900
G L P G P V G P K G E P G P T G A P G Q p.2300
| 88 . . . | 89 . . . g.27855
| GCTGTGGTCGGGCTCCCTGGAGCAAAGGGAGAGAAG | GGAGCCCCTGGAGGCCTTGCTGGA c.6960
| A V V G L P G A K G E K | G A P G G L A G p.2320
. | 90 . . . . g.28123
GACCTGGTGGGTGAGCCG | GGAGCCAAAGGTGACCGAGGACTGCCAGGGCCGCGAGGCGAG c.7020
D L V G E P | G A K G D R G L P G P R G E p.2340
| 91 . . . . | 92 . g.28986
AAG | GGTGAAGCTGGCCGTGCAGGGGAGCCCGGAGACCCTGGGGAAGAT | GGTCAGAAAGGG c.7080
K | G E A G R A G E P G D P G E D | G Q K G p.2360
. . | 93 . . . . g.29128
GCTCCAGGACCCAAAGGTTTCAAG | GGTGACCCAGGAGTCGGGGTCCCGGGCTCCCCTGGG c.7140
A P G P K G F K | G D P G V G V P G S P G p.2380
. . | 94 . . . . g.29320
CCTCCTGGCCCTCCAGGTGTGAAG | GGAGATCTGGGCCTCCCTGGCCTGCCCGGTGCTCCT c.7200
P P G P P G V K | G D L G L P G L P G A P p.2400
. . . . . . g.29380
GGTGTTGTTGGGTTCCCGGGTCAGACAGGCCCTCGAGGAGAGATGGGTCAGCCAGGCCCT c.7260
G V V G F P G Q T G P R G E M G Q P G P p.2420
. | 95 . . . . . g.29590
AGTGGAGAGCGG | GGTCTGGCAGGCCCCCCAGGGAGAGAAGGAATCCCAGGACCCCTGGGG c.7320
S G E R | G L A G P P G R E G I P G P L G p.2440
. . | 96 . . . . g.29788
CCACCTGGACCACCGGGGTCAGTG | GGACCACCTGGGGCCTCTGGACTCAAAGGAGACAAG c.7380
P P G P P G S V | G P P G A S G L K G D K p.2460
| 97 . . . . . . g.29978
| GGAGACCCTGGAGTAGGGCTGCCTGGGCCCCGAGGCGAGCGTGGGGAGCCAGGCATCCGG c.7440
| G D P G V G L P G P R G E R G E P G I R p.2480
| 98 . . . . | 99 . . g.30352
| GGTGAAGATGGCCGCCCCGGCCAGGAGGGACCCCGAGGACTCACG | GGGCCCCCTGGCAGC c.7500
| G E D G R P G Q E G P R G L T | G P P G S p.2500
. . | 100 . . . | 101 g.30607
AGGGGAGAGCGTGGGGAGAAG | GGTGATGTTGGGAGTGCAGGACTAAAGGGTGACAAG | GGA c.7560
R G E R G E K | G D V G S A G L K G D K | G p.2520
. . . . . | 102 . g.30812
GACTCAGCTGTGATCCTGGGGCCTCCAGGCCCACGGGGTGCCAAGGGGGACATG | GGTGAA c.7620
D S A V I L G P P G P R G A K G D M | G E p.2540
. . . . . . g.30872
CGAGGGCCTCGGGGCTTGGATGGTGACAAAGGACCTCGGGGAGACAATGGGGACCCTGGT c.7680
R G P R G L D G D K G P R G D N G D P G p.2560
| 103. . . . . . g.31451
GACAAG | GGCAGCAAGGGAGAGCCTGGTGACAAGGGCTCAGCCGGGTTGCCAGGACTGCGT c.7740
D K | G S K G E P G D K G S A G L P G L R p.2580
. | 104 . . . | 105 . g.32088
GGACTCCTGGGACCCCAG | GGTCAACCTGGTGCAGCAGGGATCCCTGGTGACCCG | GGATCC c.7800
G L L G P Q | G Q P G A A G I P G D P | G S p.2600
. . . . . . g.32148
CCAGGAAAGGATGGAGTGCCTGGTATCCGAGGAGAAAAAGGAGATGTTGGCTTCATGGGT c.7860
P G K D G V P G I R G E K G D V G F M G p.2620
. | 106 . . . . . g.32406
CCCCGGGGCCTCAAG | GGTGAACGGGGAGTGAAGGGAGCCTGTGGCCTTGATGGAGAGAAG c.7920
P R G L K | G E R G V K G A C G L D G E K p.2640
| 107 . . . . . g.32540
GGAGACAAG | GGAGAAGCTGGTCCCCCAGGCCGCCCCGGGCTGGCAGGACACAAAGGAGAG c.7980
G D K | G E A G P P G R P G L A G H K G E p.2660
| 108 . . . . . . g.32673
ATG | GGGGAGCCTGGTGTGCCGGGCCAGTCGGGGGCCCCTGGCAAGGAGGGCCTGATCGGT c.8040
M | G E P G V P G Q S G A P G K E G L I G p.2680
| 109. . . . . . g.33116
CCCAAG | GGTGACCGAGGCTTTGACGGGCAGCCAGGCCCCAAGGGTGACCAGGGCGAGAAA c.8100
P K | G D R G F D G Q P G P K G D Q G E K p.2700
| 110 . . . . . g.33280
GGGGAGCGG | GGAACCCCAGGAATTGGGGGCTTCCCAGGCCCCAGTGGAAATGATGGCTCT c.8160
G E R | G T P G I G G F P G P S G N D G S p.2720
. . . . . . g.33340
GCTGGTCCCCCAGGGCCACCTGGCAGTGTTGGTCCCAGAGGCCCCGAAGGACTTCAGGGC c.8220
A G P P G P P G S V G P R G P E G L Q G p.2740
| 111. . . . . . g.33569
CAGAAG | GGTGAGCGAGGTCCCCCCGGAGAGAGAGTGGTGGGGGCTCCTGGGGTCCCTGGA c.8280
Q K | G E R G P P G E R V V G A P G V P G p.2760
. . | 112 . . . . g.33725
GCTCCTGGCGAGAGAGGGGAGCAG | GGGCGGCCAGGGCCTGCCGGTCCTCGAGGCGAGAAG c.8340
A P G E R G E Q | G R P G P A G P R G E K p.2780
. | 113 . . . . g.33979
GGAGAAGCTGCACTGACG | GAGGATGACATCCGGGGCTTTGTGCGCCAAGAGATGAGTCAG c.8400
G E A A L T | E D D I R G F V R Q E M S Q p.2800
| 114 . . . | 115 . . g.34776
CACTGTG | CCTGCCAGGGCCAGTTCATCGCATCTGGATCAC | GACCCCTCCCTAGTTATGCT c.8460
H C A | C Q G Q F I A S G S R | P L P S Y A p.2820
. . . . . . g.34836
GCAGACACTGCCGGCTCCCAGCTCCATGCTGTGCCTGTGCTCCGCGTCTCTCATGCAGAG c.8520
A D T A G S Q L H A V P V L R V S H A E p.2840
| 116 . . . . . g.35104
GAGGAAG | AGCGGGTACCCCCTGAGGATGATGAGTACTCTGAATACTCCGAGTATTCTGTG c.8580
E E E | R V P P E D D E Y S E Y S E Y S V p.2860
. . . . | 117 . . g.35292
GAGGAGTACCAGGACCCTGAAGCTCCTTGGGATAGTGATG | ACCCCTGTTCCCTGCCACTG c.8640
E E Y Q D P E A P W D S D D | P C S L P L p.2880
. . . . . . g.35352
GATGAGGGCTCCTGCACTGCCTACACCCTGCGCTGGTACCATCGGGCTGTGACAGGCAGC c.8700
D E G S C T A Y T L R W Y H R A V T G S p.2900
. . . . . . g.35412
ACAGAGGCCTGTCACCCTTTTGTCTATGGTGGCTGTGGAGGGAATGCCAACCGTTTTGGG c.8760
T E A C H P F V Y G G C G G N A N R F G p.2920
. . . . . | 118 g.35832
ACCCGTGAGGCCTGCGAGCGCCGCTGCCCACCCCGGGTGGTCCAGAGCCAGGGGACAG | GT c.8820
T R E A C E R R C P P R V V Q S Q G T G | p.2940
. g.35847
ACTGCCCAGGACTGA c.8835
T A Q D X p.2944
. . . . . . g.35907
ggcccagataatgagctgagattcagcatcccctggaggagtcggggtctcagcagaacc c.*60
. . . . . . g.35967
ccactgtccctccccttggtgctagaggcttgtgtgcacgtgagcgtgcgtgtgcacgtc c.*120
. . . . . . g.36027
cgttatttcagtgacttggtcccgtgggtctagccttcccccctgtggacaaacccccat c.*180
. . . . . . g.36087
tgtggctcctgccaccctggcagatgactcactgtgggggggtggctgtgggcagtgagc c.*240
. . . . . . g.36147
ggatgtgactggcgtctgacccgccccttgacccaagcctgtgatgacatggtgctgatt c.*300
. . . g.36180
ctggggggcattaaagctgctgttttaaaaggc c.*333
(downstream sequence)
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