collagen, type IX, alpha 1 (COL9A1) - 9404 nt intron 28 reference sequence

(intronic numbering for coding DNA Reference Sequence)


         .         .         .         .         .         .  g.56024
gtgagtattccttgctgttctttcctaaagcaccttctcaggactttgctggatgttctt  c.1872+60

         .         .         .         .         .         .  g.56084
ccattcattcatccatctatccatgaatgctgtctgatgtttgagcccatgctagtccaa  c.1872+120

         .         .         .         .         .         .  g.56144
gacacacaaggagatgaaatgctatttagatgcacagcatgccttttcagaaaatggaaa  c.1872+180

         .         .         .         .         .         .  g.56204
caaaaataaagtgcttcaaaaaccatggtgaccctttctgccctcaccccatgtttaagg  c.1872+240

         .         .         .         .         .         .  g.56264
aaatattttagtgtgatttaaaaagacccaacgttgagatacaattcacatactatataa  c.1872+300

         .         .         .         .         .         .  g.56324
ttcacctatctttattgatttttagcatattgatggaattgtgcaaccatcaccccaatc  c.1872+360

         .         .         .         .         .         .  g.56384
aagtttagaatatttccatcacctaaaaaaagaatcttatacccacctcccacctgcagt  c.1872+420

         .         .         .         .         .         .  g.56444
catccatcatttcctcttaattccttcagttttagacaaccactaatccactttatgtct  c.1872+480

         .         .         .         .         .         .  g.56504
ctatagatttgccaattctggaagtttcataaaaatggaatcatacaatatgtgagcttt  c.1872+540

         .         .         .         .         .         .  g.56564
ttgttttttaaaaataaatagttaattttttaagagatatggtgtctctcaatcacccag  c.1872+600

         .         .         .         .         .         .  g.56624
gttggggtgcagtggcgcaatcgtagctcacagcaaccttgaactcctgggctcatgcag  c.1872+660

         .         .         .         .         .         .  g.56684
tcctcctgcctaagcctcccgagtggctgggactgaaggggtgcatcaccacacctggct  c.1872+720

         .         .         .         .         .         .  g.56744
aacttttaatttttttttgtagagatggggtcttgctatgttgaccaggctggtcttgaa  c.1872+780

         .         .         .         .         .         .  g.56804
ctcccggcttcaagagatccttctgcctcagcttcccaaaatgttgggattacagacatg  c.1872+840

         .         .         .         .         .         .  g.56864
agctaccatgcccgactgtattttattttttttcctaatgattggcttctgtcacttagc  c.1872+900

         .         .         .         .         .         .  g.56924
ataatgtttcaaggtttatctatgctgtagcatgtatcagtacttcatttctttttattc  c.1872+960

         .         .         .         .         .         .  g.56984
ttgaatatatttaattgtggggattaattatgtggctatatcacattttattgatccatg  c.1872+1020

         .         .         .         .         .         .  g.57044
cattgggtgatggacatttgaattgtttccattttttggccgttatgaaaagtgctgcta  c.1872+1080

         .         .         .         .         .         .  g.57104
tgaacattcgtatacaggtttttgtgtggacatgtgttttaatttttcttgagtgcctac  c.1872+1140

         .         .         .         .         .         .  g.57164
ctaggagtggaattgctgggtgatagggtagctctgctttggagaaaccaccagactttt  c.1872+1200

         .         .         .         .         .         .  g.57224
cttagtgtgagtttgtaaacttgtctattttatagcagccatagcaatgaccattttctc  c.1872+1260

         .         .         .         .         .         .  g.57284
actatacacagtttaaccctagagagaaattgattaggaaattaaatattatacacttaa  c.1872+1320

         .         .         .         .         .         .  g.57344
atttgactttaaaacattctctctggccttcagtttcagttcttattttcaaaggctgcg  c.1872+1380

         .         .         .         .         .         .  g.57404
gaatagccaaaagaactccaagtgagaacacagaaacatttccaaatatcattattactt  c.1872+1440

         .         .         .         .         .         .  g.57464
tttttgaagcatttcttgggcttgttgaatgaagatttttatacttgagaaaagcaatgt  c.1872+1500

         .         .         .         .         .         .  g.57524
attccaggtgtcttgtgccatgagaatggaatttctccacttctcacagacatttgtcag  c.1872+1560

         .         .         .         .         .         .  g.57584
ccgacttccaccaggtggtttcctgaggtttctgcagccaaaacaaccagctcataatgc  c.1872+1620

         .         .         .         .         .         .  g.57644
ccctcactcacttgctctgtgcttattttattcttttcttttgcttgaagcttgtgaatt  c.1872+1680

         .         .         .         .         .         .  g.57704
tctaattaaaatactttccacaagttaactgtcgaagcaatgacattatagccagatcac  c.1872+1740

         .         .         .         .         .         .  g.57764
atttctaaaacaatgaagatgctatatgactagcccaggaagattgagcagtgtgtggcc  c.1872+1800

         .         .         .         .         .         .  g.57824
attagagctttgcgagtgtttactattacatctcttattcatcttattttattttatttt  c.1872+1860

         .         .         .         .         .         .  g.57884
aaacagagtctcactctgttgcccaggctggagtgcagtggtaggatcttggctcactgc  c.1872+1920

         .         .         .         .         .         .  g.57944
aatctccacctcctgggttcaagtgatcctcccaccttagcctccagaatagctggaact  c.1872+1980

         .         .         .         .         .         .  g.58004
acaggtgcacaccaccatgcccagctaattgttgtattttttatagagacagggttttgc  c.1872+2040

         .         .         .         .         .         .  g.58064
catgttgcccaggctggtttcaatctcctgagctcaggagattcaccctttttggcctcc  c.1872+2100

         .         .         .         .         .         .  g.58124
caaagtgctgggattacaggtgtgagccacctcacccggctgtattagtcactttaaaga  c.1872+2160

         .         .         .         .         .         .  g.58184
gcagaaagctctatatagttaaaggaacattgactgagcacttgttgtgggacagaacca  c.1872+2220

         .         .         .         .         .         .  g.58244
tgcatgaatacaaaacatgacatggagtagggagagctgcttggccagtcaccagttaag  c.1872+2280

         .         .         .         .         .         .  g.58304
tgccgtgggctgcataaagcaatgaagaaccagaggcagcacctcaggagaggatggggt  c.1872+2340

         .         .         .         .         .         .  g.58364
agggggttgattctcttatgtgaggagaggcaaatcataggaggctatgctgatgcaggg  c.1872+2400

         .         .         .         .         .         .  g.58424
ttttggatctgagttttagatttttgatttttgaatttctgtaagagtctaaattcttgc  c.1872+2460

         .         .         .         .         .         .  g.58484
cattgctcctgtccctgaggctcaaaacctcagcattttcctccatcacatttcctatca  c.1872+2520

         .         .         .         .         .         .  g.58544
caaataggacctgttggttctgtcctcttttcaagatctcttatatttgactcttcattt  c.1872+2580

         .         .         .         .         .         .  g.58604
ccattcccactactatcaccctggctcaggtcatcacctactgcttggattactgcaatt  c.1872+2640

         .         .         .         .         .         .  g.58664
gtctcaccggctgcagtctttcctttctctaccagtgtctcccaaaaggatattgctgca  c.1872+2700

         .         .         .         .         .         .  g.58724
acttgggctgggctagttctttgttttccagaactcttgcacatggcagggtgtctcaca  c.1872+2760

         .         .         .         .         .         .  g.58784
tccatgacctctgtcctgcacgaacatcagtagtgtctccacagtcactgggacaaacaa  c.1872+2820

         .         .         .         .         .         .  g.58844
aaatgccaaacacaattccaaagtccctggggaatgatagttccctgagtctgcacacac  c.1872+2880

         .         .         .         .         .         .  g.58904
cactgtattggtatttccaaagtacagcatccatactcacttctccccatttaaaaatct  c.1872+2940

         .         .         .         .         .         .  g.58964
tcagtggatttccacggacagtaagagaaagtctaaaatcttaaactgtccattaacctc  c.1872+3000

         .         .         .         .         .         .  g.59024
cctgttttacttctcatttcggctttactcagatcttgtgttcaagtcaggctggactcc  c.1872+3060

         .         .         .         .         .         .  g.59084
atgctaattctcaaatactctccgtacctctttcctgtaggccagaccctgcatttaaat  c.1872+3120

         .         .         .         .         .         .  g.59144
ggctttttccttcatttctctggctcaacattccataagccatctcagatgtaattggaa  c.1872+3180

         .         .         .         .         .         .  g.59204
tgttaattgcatcatgaaaacatttcaattatgccctgtcccccagatagaagtgatctt  c.1872+3240

         .         .         .         .         .         .  g.59264
tccttattctgaactcttgtgtcctttgtaccccatgccgtggtaactgcagaaggtgcc  c.1872+3300

         .         .         .         .         .         .  g.59324
agtcatgtcgttttcaccgctgtgtttcccacctcgctttcctcagggcttgccataagg  c.1872+3360

         .         .         .         .         .         .  g.59384
tagcactcaatcaatatttcttgaaacgaattgaatcggaggcgtaataaatcctgccat  c.1872+3420

         .         .         .         .         .         .  g.59444
gctgcttttgttggtaataactgacttctcacctgctataaaattttctgaaaaatgtca  c.1872+3480

         .         .         .         .         .         .  g.59504
tgataggttataaatgttatagttctggagcagagttttaacaccaaatccacttactga  c.1872+3540

         .         .         .         .         .         .  g.59564
aagacacatttgttctttcactttacatcattaaattcagttttgtagataacttcatac  c.1872+3600

         .         .         .         .         .         .  g.59624
atttttaacaatgcctcacacgtttgatcagtttttcctgcaaatctaaaacaagctgag  c.1872+3660

         .         .         .         .         .         .  g.59684
aagaagaaatgagctactgaggcatgtgggttggagatgaagacatggacacacatttct  c.1872+3720

         .         .         .         .         .         .  g.59744
aatgtgtcctagaagcatgtatttgaaattaagtgctatttcctttaatgtttgccaata  c.1872+3780

         .         .         .         .         .         .  g.59804
ctactgcaaaaatattgtctgttcattttggtgcctccagaggtttcatatgggcgcctg  c.1872+3840

         .         .         .         .         .         .  g.59864
cctttacgatgtaggctatgcttctggatttctctatggccctccccttggttttcacct  c.1872+3900

         .         .         .         .         .         .  g.59924
ggtctgggtggctcctggttttgcacaggcacatgacctgggcttttcatttggtcctac  c.1872+3960

         .         .         .         .         .         .  g.59984
catgtggtagctctcggtccatttctgtcttcctggcttctgagaacttgccagggcttt  c.1872+4020

         .         .         .         .         .         .  g.60044
tgctgagtgggttgtgttcattctgctctcgtggcactgactgggatgagtttcatgctg  c.1872+4080

         .         .         .         .         .         .  g.60104
atgtacctcagttttctgaagatgatacgttccttgtgtacagaagcctgtctactttct  c.1872+4140

         .         .         .         .         .         .  g.60164
ctcgtagtcctttaccacccctccaataccaacagcctcaatgacagaggtccacaaatg  c.1872+4200

         .         .         .         .         .         .  g.60224
ttgtattgtgaaagatctaagccaccctcccactccatctaggcactggcatgtttcctc  c.1872+4260

         .         .         .         .         .         .  g.60284
tgtcaataatttgtgaagctgatgtgtgtgatggttagagtttggacagatttttttttt  c.1872+4320

         .         .         .         .         .         .  g.60344
ctgcctctgtatgagggcatatgtaaacatacacaagagaaatatgcaaactatataatg  c.1872+4380

         .         .         .         .         .         .  g.60404
taaaattgaatagattttaaaaatatctttgtgacaaatctaaatgttatcattgtagta  c.1872+4440

         .         .         .         .         .         .  g.60464
ggactaatatgacctttcaatgttaacatgaaaatgggtttataaaagcagcaatctata  c.1872+4500

         .         .         .         .         .         .  g.60524
gaaatcataattgatctcctaggttaatcagcattctttttgccagagagaggcacttaa  c.1872+4560

         .         .         .         .         .         .  g.60584
tatatagtacagactaagtatagtgatttataatttccaacctctgaattggaaaggtac  c.1872+4620

         .         .         .         .         .         .  g.60644
tgaggatagtgttcgtttttcagttagttagcattttgggtagttggacaaagacaacag  c.1872+4680

         .         .    g.60666
ccattacaagctagagcatgat  c.1872+4702

--------------------- middle of intron ---------------------
                         g.60667        .         .           g.60688
                         c.1873-4702  ggaataaaatccatttattggg  c.1873-4681

.         .         .         .         .         .           g.60748
aaaataattttggcagcataagtataattaagttaaatctgttattttttgtgatctttt  c.1873-4621

.         .         .         .         .         .           g.60808
aaaagtctaacagttccattttaaaaggaaaacctccaacttgaattatttagctgtatg  c.1873-4561

.         .         .         .         .         .           g.60868
tatttatggaaataatttttacaaaataacacccagtacttgtttataaagaagttgcct  c.1873-4501

.         .         .         .         .         .           g.60928
gcttgatgatcagtgatgttgacagaaactggaaacatgaaaactaaagacttatttttt  c.1873-4441

.         .         .         .         .         .           g.60988
tccaagcacaacttgtgcttttaaacagacttgggggatttgacaggcaaacaacattta  c.1873-4381

.         .         .         .         .         .           g.61048
attaaacatttggttaaaaatgttttggccgatttctttagtaattacctcagatcaata  c.1873-4321

.         .         .         .         .         .           g.61108
taactaacacttctactatgcttactatgagacaagcatagttctaagtgatttatgtct  c.1873-4261

.         .         .         .         .         .           g.61168
tttaacttattcaatcctcaaaaaagccctaagagataagtactatttttattcccactt  c.1873-4201

.         .         .         .         .         .           g.61228
tatagatgaggaaacaggcacggagaggttaagctgcttgcccgaagttaccagatgcat  c.1873-4141

.         .         .         .         .         .           g.61288
ggcaaaatcagcttcagaccaggccactgggctcagtgttcttgtctttatttccaccct  c.1873-4081

.         .         .         .         .         .           g.61348
cgcatatgcctcagtagctcaaatcatagctccacaggatgattttcagttgaagtttgc  c.1873-4021

.         .         .         .         .         .           g.61408
tggctaaatgctgatgttacaagacgtatctagcaaattatttaaaatttatggaacttt  c.1873-3961

.         .         .         .         .         .           g.61468
ggtggtgggcatttaacaaaagtctgagaaagctggtaaagacaaacaaatacaacataa  c.1873-3901

.         .         .         .         .         .           g.61528
atgcatacagattcctggatcttaccccagacctgcagaattagaatcagagggcaaggg  c.1873-3841

.         .         .         .         .         .           g.61588
gctaaataaagataaggaatggggagatggggttggggggaggacatctagtgcaatata  c.1873-3781

.         .         .         .         .         .           g.61648
tttctaaagaactcaggggattctgatgcatagctatcactgggaatcagtgatagaagg  c.1873-3721

.         .         .         .         .         .           g.61708
tctgcatctttttcaaagccctgattggcggctgcttcttctttgtcttctttttttttt  c.1873-3661

.         .         .         .         .         .           g.61768
gtttgtttgtttctttgagatgaagtcacactctgttgcccaggctggaatgcagtgatg  c.1873-3601

.         .         .         .         .         .           g.61828
caatctcgggtcactgcaacctccatctcccagtttcaagaaattctcccccctcagcct  c.1873-3541

.         .         .         .         .         .           g.61888
cccgagtagttgggattacaggcgcccgccatgatgcctagctaatttttgtagagacag  c.1873-3481

.         .         .         .         .         .           g.61948
gggtttgaccatgttggccaggctggtcccaaactcttgacctcaggtgatccgtccgca  c.1873-3421

.         .         .         .         .         .           g.62008
tcagcctcttaaagtgctgggattataaggcatgagcccctgcgcctagccctgaatggc  c.1873-3361

.         .         .         .         .         .           g.62068
ttcttaaaaagagatgagttggcagatgtgtctcaatttgttggggacgtatgtggcagc  c.1873-3301

.         .         .         .         .         .           g.62128
acagagcatccaagagaaatgtacagcctttggttatggttcatcattatttttggtttt  c.1873-3241

.         .         .         .         .         .           g.62188
tgggatggagtctaacttttttgcctaggctggggtgcagtggcgcgatcttgggtcact  c.1873-3181

.         .         .         .         .         .           g.62248
gcaacctccacctcccgggttcaagtgatgctcctgcctcagcctcctgagtagctggga  c.1873-3121

.         .         .         .         .         .           g.62308
gtacaggcacctgccaccacgccaagctaatttttgtatgtttagtagagacggggtttc  c.1873-3061

.         .         .         .         .         .           g.62368
accatgttggtcgggctggtctcgaactcctgatctcaagtgatccacccacctcggcct  c.1873-3001

.         .         .         .         .         .           g.62428
cccaaagtgctgggattacaggtgtgaaccaccatgcgcggccaattcatcatttttaat  c.1873-2941

.         .         .         .         .         .           g.62488
ggtaggatttttgcctttattccagtttcttcttattcctttattataaattggaactct  c.1873-2881

.         .         .         .         .         .           g.62548
tgttgtcatgggatttataaatattagcaactgggaagaacagccttttcctaccaccct  c.1873-2821

.         .         .         .         .         .           g.62608
ctcttgcccatatctgagaatatggttatcaccaaggctgttgaagactaagagttttag  c.1873-2761

.         .         .         .         .         .           g.62668
catttatttagcacacttgtggttaccggtgccatgggtaacccgtttacgcctgaggtt  c.1873-2701

.         .         .         .         .         .           g.62728
gcaattttttgaatttttacaatcagaccttggcgatgaccttcagcagtaggatataaa  c.1873-2641

.         .         .         .         .         .           g.62788
taactcccacatgcttaattactccctgaggaatgtgtttagtctatgttttcagagata  c.1873-2581

.         .         .         .         .         .           g.62848
actgtttatatcttgattatttatgttcatcttagcttagtagatgaaattccagaactt  c.1873-2521

.         .         .         .         .         .           g.62908
agagcaagagtatgcatgttcttagaagacaaagaaatcacatgaatgggcatcagaaac  c.1873-2461

.         .         .         .         .         .           g.62968
tcgccccaacaccttgtttgtaactgtttggtcactcttgggaaaataaacattactgtt  c.1873-2401

.         .         .         .         .         .           g.63028
ttgcacagtgaggtgatttctgtaaaattacctgcatttagaatggccaaggatttatag  c.1873-2341

.         .         .         .         .         .           g.63088
gatggaagtgaaataaaaatgaggaaccacatgctgtccatttgtgcagtaacaggggag  c.1873-2281

.         .         .         .         .         .           g.63148
taaatgctcacaattttactgatccttctctccgtgctacatatggtggactcttatggg  c.1873-2221

.         .         .         .         .         .           g.63208
tacacaagttcagcagagcaggctgtgtatgtgggtctctgagctgttcattcatatata  c.1873-2161

.         .         .         .         .         .           g.63268
ttaccaagggtctgccactggttggaaagcacttataaactgtaataagaacttagaaaa  c.1873-2101

.         .         .         .         .         .           g.63328
gacagagaaaataagagtccagcagagaaaatctttgttattcactgggaagataattaa  c.1873-2041

.         .         .         .         .         .           g.63388
tcctcccccaaataaatcaaagattatacaatctcttattttaatttagccctttggttt  c.1873-1981

.         .         .         .         .         .           g.63448
atggaagagaaaaaaatgtataataatcatctttattttggataagatagcataatggtt  c.1873-1921

.         .         .         .         .         .           g.63508
catttatttagaaatgaatacttgagaatgtgccaaaaactgagatttccccttctgata  c.1873-1861

.         .         .         .         .         .           g.63568
ttaacttttccccaccaattactattaattgttctgtgaattaaagtcacgtgagcccag  c.1873-1801

.         .         .         .         .         .           g.63628
tgatatttaggatgtcaatcatgatgcacttgagaaattatttcaaaatgccaacagagc  c.1873-1741

.         .         .         .         .         .           g.63688
agacacgatgaggaaaatctgtcttgaactttgaagttgtaaagatggggtagaacccaa  c.1873-1681

.         .         .         .         .         .           g.63748
tttttatatttatagatggatagaggaatctatcacaggggctggttttcatctagactc  c.1873-1621

.         .         .         .         .         .           g.63808
acattctcccagtatccaccctcatggggcactgcctctggcttccaaactgctcatgag  c.1873-1561

.         .         .         .         .         .           g.63868
gttaaggaccaatgcatcatcccaaagtcatataccagacacaggttgtttatataaagt  c.1873-1501

.         .         .         .         .         .           g.63928
tgttgaaaaatgtttaaaagcatttagtttaaatcacctataagtcatatgaaatgacta  c.1873-1441

.         .         .         .         .         .           g.63988
ctatgaaattattgctaatattaattgctagattgttgtaaactggcaaacagttcttaa  c.1873-1381

.         .         .         .         .         .           g.64048
tcctttagagaaattcaaaattcagaaggtttatggatctttacactttgttaaacttaa  c.1873-1321

.         .         .         .         .         .           g.64108
ataggaataaatagcacgagtcagaataatcttatcagaagcatttataaatattaaaca  c.1873-1261

.         .         .         .         .         .           g.64168
ttaatatggagctgtcatgtcattttacagaaaaattaacttaaaggactcctttcattt  c.1873-1201

.         .         .         .         .         .           g.64228
ttatatgcaccttccaggaaatgtgattatttatccaataatgtcagtgttcagcttagt  c.1873-1141

.         .         .         .         .         .           g.64288
tgaacatgcattagaaataaaatgagctagccgggcgcagtggctcacacctgtaatccc  c.1873-1081

.         .         .         .         .         .           g.64348
agcacgttgggaggccaaggcgggcggatcacctgaggtcaggaattcaagaccagcctg  c.1873-1021

.         .         .         .         .         .           g.64408
gccaatatggcgaaacccggtctctactaaaaatacaaaaatcagccaggcgtggtggca  c.1873-961

.         .         .         .         .         .           g.64468
tgcacctgtactcccagctactcaggaggctgaggcaggagaatcacttgaacctgggag  c.1873-901

.         .         .         .         .         .           g.64528
atggaggttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagaaag  c.1873-841

.         .         .         .         .         .           g.64588
actccgtctcaaaaaaaaaaattaggaaataaaatgaacttttgtcagattgcataaaat  c.1873-781

.         .         .         .         .         .           g.64648
tgtatgaagttctcagggaaaaaagttgaaaagttcatgtgtttctttttctcaatagat  c.1873-721

.         .         .         .         .         .           g.64708
tagaaaagcttagcatttcaaataaaaatttgaaagcttagagtttcaaataaaaaattg  c.1873-661

.         .         .         .         .         .           g.64768
aagtaggttcacaaaataaaattatttttggtgtatcttcgttataagttctactttctg  c.1873-601

.         .         .         .         .         .           g.64828
aagtctgtttaatcttttaagatatgtttagaacaaaaatgagtagaagaaaaaaatttt  c.1873-541

.         .         .         .         .         .           g.64888
tacttcagaaacttcagaaatttttaccatctgtgtctttttgaagttgcaatagtaatt  c.1873-481

.         .         .         .         .         .           g.64948
taaaggcaaacatatctattatgtgtttcttttttcactctgttgaggtttaagatcatt  c.1873-421

.         .         .         .         .         .           g.65008
tgccagatgttgctttgaaatgttctgtagacctgagaatttattctgtgttctaggcac  c.1873-361

.         .         .         .         .         .           g.65068
tgtgcagaattccaaattaatatttaacaataccttaagaacacataatctaagtgaggg  c.1873-301

.         .         .         .         .         .           g.65128
cttaaaacatggacacaaataaccataataaaagttaggatgtgatttagatgttgaaag  c.1873-241

.         .         .         .         .         .           g.65188
tgactaattgccatttcatatacatgcatagctatcatttctaaacgtctgtaatcacag  c.1873-181

.         .         .         .         .         .           g.65248
taaacagcattcgaatcattcaatgcaagatgaacacaggatgctgtaggcactatgtag  c.1873-121

.         .         .         .         .         .           g.65308
gatggcctatgcctttagctgaaggaaaaaaacctaggtaggatgttattttatttacat  c.1873-61

.         .         .         .         .         .           g.65368
agtaactaagcatttgaattttggcaaaatatccaattgacaatgtttgtgtttttacag  c.1873-1


Powered by LOVD v.3.0 Build 25b
©2004-2020 Leiden University Medical Center