(used for variant description)
(last modified April 24, 2013)
This file was created to facilitate the description of sequence variants on transcript NM_000096.3 in the CP gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000003.11, covering CP transcript NM_000096.3.
(upstream sequence)
. g.5013
acaccctaatgcc c.-241
. . . . . . g.5073
tccaacaataactgttgactttttattttcagtcagagaagcctggcaaccaagaactgt c.-181
. . . . . . g.5133
ttttttggtggtttacgagaacttaactgaattggaaaatatttgctttaatgaaacaat c.-121
. . . . . . g.5193
ttactcttgtgcaacactaaattgtgtcaatcaagcaaataaggaagaaagtcttattta c.-61
. . . . . . g.5253
taaaattgcctgctcctgattttacttcatttcttctcaggctccaagaaggggaaaaaa c.-1
. . . . . . g.5313
ATGAAGATTTTGATACTTGGTATTTTTCTGTTTTTATGTAGTACCCCAGCCTGGGCGAAA c.60
M K I L I L G I F L F L C S T P A W A K p.20
. . . . . . g.5373
GAAAAGCATTATTACATTGGAATTATTGAAACGACTTGGGATTATGCCTCTGACCATGGG c.120
E K H Y Y I G I I E T T W D Y A S D H G p.40
. . | 02 . . . . g.14381
GAAAAGAAACTTATTTCTGTTGACAC | GGAACATTCCAATATCTATCTTCAAAATGGCCCA c.180
E K K L I S V D T | E H S N I Y L Q N G P p.60
. . . . . . g.14441
GATAGAATTGGGAGACTATATAAGAAGGCCCTTTATCTTCAGTACACAGATGAAACCTTT c.240
D R I G R L Y K K A L Y L Q Y T D E T F p.80
. . . . . . g.14501
AGGACAACTATAGAAAAACCGGTCTGGCTTGGGTTTTTAGGCCCTATTATCAAAGCTGAA c.300
R T T I E K P V W L G F L G P I I K A E p.100
. . . . . . g.14561
ACTGGAGATAAAGTTTATGTACACTTAAAAAACCTTGCCTCTAGGCCCTACACCTTTCAT c.360
T G D K V Y V H L K N L A S R P Y T F H p.120
. . . | 03 . . . g.16692
TCACATGGAATAACTTACTATAAGGAACATGAGG | GGGCCATCTACCCTGATAACACCACA c.420
S H G I T Y Y K E H E G | A I Y P D N T T p.140
. . . . . . g.16752
GATTTTCAAAGAGCAGATGACAAAGTATATCCAGGAGAGCAGTATACATACATGTTGCTT c.480
D F Q R A D D K V Y P G E Q Y T Y M L L p.160
. . . . . . g.16812
GCCACTGAAGAACAAAGTCCTGGGGAAGGAGATGGCAATTGTGTGACTAGGATTTACCAT c.540
A T E E Q S P G E G D G N C V T R I Y H p.180
. . . . . . g.16872
TCCCACATTGATGCTCCAAAAGATATTGCCTCAGGACTCATCGGACCTTTAATAATCTGT c.600
S H I D A P K D I A S G L I G P L I I C p.200
| 04. . . . . . g.17714
AAAAAAG | ATTCTCTAGATAAAGAAAAAGAAAAACATATTGACCGAGAATTTGTGGTGATG c.660
K K D | S L D K E K E K H I D R E F V V M p.220
. . . . . . g.17774
TTTTCTGTGGTGGATGAAAATTTCAGCTGGTACCTAGAAGACAACATTAAAACCTACTGC c.720
F S V V D E N F S W Y L E D N I K T Y C p.240
. . . . . . g.17834
TCAGAACCAGAGAAAGTTGACAAAGACAACGAAGACTTCCAGGAGAGTAACAGAATGTAT c.780
S E P E K V D K D N E D F Q E S N R M Y p.260
| 05 . . . . . . g.19487
T | CTGTGAATGGATACACTTTTGGAAGTCTCCCAGGACTCTCCATGTGTGCTGAAGACAGA c.840
S | V N G Y T F G S L P G L S M C A E D R p.280
. . . . . . g.19547
GTAAAATGGTACCTTTTTGGTATGGGTAATGAAGTTGATGTGCACGCAGCTTTCTTTCAC c.900
V K W Y L F G M G N E V D V H A A F F H p.300
. . . . . . g.19607
GGGCAAGCACTGACTAACAAGAACTACCGTATTGACACAATCAACCTCTTTCCTGCTACC c.960
G Q A L T N K N Y R I D T I N L F P A T p.320
. . . . . . g.19667
CTGTTTGATGCTTATATGGTGGCCCAGAACCCTGGAGAATGGATGCTCAGCTGTCAGAAT c.1020
L F D A Y M V A Q N P G E W M L S C Q N p.340
. | 06 . . . . . g.20750
CTAAACCATCTGAAAG | CCGGTTTGCAAGCCTTTTTCCAGGTCCAGGAGTGTAACAAGTCT c.1080
L N H L K A | G L Q A F F Q V Q E C N K S p.360
. . . . . . g.20810
TCATCAAAGGATAATATCCGTGGGAAGCATGTTAGACACTACTACATTGCCGCTGAGGAA c.1140
S S K D N I R G K H V R H Y Y I A A E E p.380
. . . . . . g.20870
ATCATCTGGAACTATGCTCCCTCTGGTATAGACATCTTCACTAAAGAAAACTTAACAGCA c.1200
I I W N Y A P S G I D I F T K E N L T A p.400
| 07 . . . . . g.24856
CCTGGAAG | TGACTCAGCGGTGTTTTTTGAACAAGGTACCACAAGAATTGGAGGCTCTTAT c.1260
P G S | D S A V F F E Q G T T R I G G S Y p.420
. . . . . . g.24916
AAAAAGCTGGTTTATCGTGAGTACACAGATGCCTCCTTCACAAATCGAAAGGAGAGAGGC c.1320
K K L V Y R E Y T D A S F T N R K E R G p.440
. . | 08 . . . g.27213
CCTGAAGAAGAGCATCTTGGCATCCTGG | GTCCTGTCATTTGGGCAGAGGTGGGAGACACC c.1380
P E E E H L G I L G | P V I W A E V G D T p.460
. . . . . . g.27273
ATCAGAGTAACCTTCCATAACAAAGGAGCATATCCCCTCAGTATTGAGCCGATTGGGGTG c.1440
I R V T F H N K G A Y P L S I E P I G V p.480
. . . . . . g.27333
AGATTCAATAAGAACAACGAGGGCACATACTATTCCCCAAATTACAACCCCCAGAGCAGA c.1500
R F N K N N E G T Y Y S P N Y N P Q S R p.500
| 09 . . . . . . g.28526
A | GTGTGCCTCCTTCAGCCTCCCATGTGGCACCCACAGAAACATTCACCTATGAATGGACT c.1560
S | V P P S A S H V A P T E T F T Y E W T p.520
. . . . . . g.28586
GTCCCCAAAGAAGTAGGACCCACTAATGCAGATCCTGTGTGTCTAGCTAAGATGTATTAT c.1620
V P K E V G P T N A D P V C L A K M Y Y p.540
. . . . . . g.28646
TCTGCTGTGGAACCCACTAAAGATATATTCACTGGGCTTATTGGGCCAATGAAAATATGC c.1680
S A V E P T K D I F T G L I G P M K I C p.560
. . . | 10 . . . g.38870
AAGAAAGGAAGTTTACATGCAAATGGGAGACAG | AAAGATGTAGACAAGGAATTCTATTTG c.1740
K K G S L H A N G R Q | K D V D K E F Y L p.580
. . . . . . g.38930
TTTCCTACAGTATTTGATGAGAATGAGAGTTTACTCCTGGAAGATAATATTAGAATGTTT c.1800
F P T V F D E N E S L L L E D N I R M F p.600
. . . . . . g.38990
ACAACTGCACCTGATCAGGTGGATAAGGAAGATGAAGACTTTCAGGAATCTAATAAAATG c.1860
T T A P D Q V D K E D E D F Q E S N K M p.620
| 11 . . . . . . g.40369
CACT | CCATGAATGGATTCATGTATGGGAATCAGCCGGGTCTCACTATGTGCAAAGGAGAT c.1920
H S | M N G F M Y G N Q P G L T M C K G D p.640
. . . . . . g.40429
TCGGTCGTGTGGTACTTATTCAGCGCCGGAAATGAGGCCGATGTACATGGAATATACTTT c.1980
S V V W Y L F S A G N E A D V H G I Y F p.660
. . . . . . g.40489
TCAGGAAACACATATCTGTGGAGAGGAGAACGGAGAGACACAGCAAACCTCTTCCCTCAA c.2040
S G N T Y L W R G E R R D T A N L F P Q p.680
. . . | 12. . . g.41622
ACAAGTCTTACGCTCCACATGTGGCCTGACACAGAGG | GGACTTTTAATGTTGAATGCCTT c.2100
T S L T L H M W P D T E G | T F N V E C L p.700
. . . . . . g.41682
ACAACTGATCATTACACAGGCGGCATGAAGCAAAAATATACTGTGAACCAATGCAGGCGG c.2160
T T D H Y T G G M K Q K Y T V N Q C R R p.720
. . . . . . g.41742
CAGTCTGAGGATTCCACCTTCTACCTGGGAGAGAGGACATACTATATCGCAGCAGTGGAG c.2220
Q S E D S T F Y L G E R T Y Y I A A V E p.740
. . . . . . g.41802
GTGGAATGGGATTATTCCCCACAAAGGGAGTGGGAAAAGGAGCTGCATCATTTACAAGAG c.2280
V E W D Y S P Q R E W E K E L H H L Q E p.760
| 13 . . . . . . g.43495
CAGAA | TGTTTCAAATGCATTTTTAGATAAGGGAGAGTTTTACATAGGCTCAAAGTACAAG c.2340
Q N | V S N A F L D K G E F Y I G S K Y K p.780
. . . . . . g.43555
AAAGTTGTGTATCGGCAGTATACTGATAGCACATTCCGTGTTCCAGTGGAGAGAAAAGCT c.2400
K V V Y R Q Y T D S T F R V P V E R K A p.800
. . | 14 . . . . g.44947
GAAGAAGAACATCTGGGAATTCTAG | GTCCACAACTTCATGCAGATGTTGGAGACAAAGTC c.2460
E E E H L G I L G | P Q L H A D V G D K V p.820
. . . . . . g.45007
AAAATTATCTTTAAAAACATGGCCACAAGGCCCTACTCAATACATGCCCATGGGGTACAA c.2520
K I I F K N M A T R P Y S I H A H G V Q p.840
. . . | 15 . . . g.47409
ACAGAGAGTTCTACAGTTACTCCAACATTACCAG | GTGAAACTCTCACTTACGTATGGAAA c.2580
T E S S T V T P T L P G | E T L T Y V W K p.860
. . . . . . g.47469
ATCCCAGAAAGATCTGGAGCTGGAACAGAGGATTCTGCTTGTATTCCATGGGCTTATTAT c.2640
I P E R S G A G T E D S A C I P W A Y Y p.880
. . | 16 . . . . g.48453
TCAACTGTGGATCAAGTTAAG | GACCTCTACAGTGGATTAATTGGCCCCCTGATTGTTTGT c.2700
S T V D Q V K | D L Y S G L I G P L I V C p.900
. . . . . . g.48513
CGAAGACCTTACTTGAAAGTATTCAATCCCAGAAGGAAACTGGAATTTGCCCTTCTGTTT c.2760
R R P Y L K V F N P R R K L E F A L L F p.920
. . . . . . g.48573
CTAGTTTTTGATGAGAATGAATCTTGGTACTTAGATGACAACATCAAAACATACTCTGAT c.2820
L V F D E N E S W Y L D D N I K T Y S D p.940
. . . . . | 17 g.49068
CACCCCGAGAAAGTAAACAAAGATGATGAGGAATTCATAGAAAGCAATAAAATGCATG | CT c.2880
H P E K V N K D D E E F I E S N K M H A | p.960
. . . . . . g.49128
ATTAATGGAAGAATGTTTGGAAACCTACAAGGCCTCACAATGCACGTGGGAGATGAAGTC c.2940
I N G R M F G N L Q G L T M H V G D E V p.980
. . . . . . g.49188
AACTGGTATCTGATGGGAATGGGCAATGAAATAGACTTACACACTGTACATTTTCACGGC c.3000
N W Y L M G M G N E I D L H T V H F H G p.1000
. | 18 . . . . g.50675
CATAGCTTCCAATACAAG | CACAGGGGAGTTTATAGTTCTGATGTCTTTGACATTTTCCCT c.3060
H S F Q Y K | H R G V Y S S D V F D I F P p.1020
. . . . . . g.50735
GGAACATACCAAACCCTAGAAATGTTTCCAAGAACACCTGGAATTTGGTTACTCCACTGC c.3120
G T Y Q T L E M F P R T P G I W L L H C p.1040
. . . . . . g.50795
CATGTGACCGACCACATTCATGCTGGAATGGAAACCACTTACACCGTTCTACAAAATGAA c.3180
H V T D H I H A G M E T T Y T V L Q N E p.1060
| 19 . g.53374
G | ACACCAAATCTGGCTGA c.3198
D | T K S G X p.1065
. . . . . . g.53434
atgaaataaattggtgataagtggaaaaaagagaaaaaccaatgattcataacaatgtat c.*60
. . . . . . g.53494
gtgaaagtgtaaaatagaatgttactttggaatgactataaacattaaaagaagactgga c.*120
. . . . . . g.53554
agcatacaactttgtacatttgtgggggaaaactattaattttttgcaaatggaaagatc c.*180
. . . . . . g.53614
aacagactatataatgatacatgactgacacttgtacactaggtaataaaactgattcat c.*240
. . . . . . g.53674
acagtctaatgatatcaccgctgttagggttttataaaactgcatttaaaaaaagatcta c.*300
. . . . . . g.53734
tgaccagatattctcctgggtgctcctcaaaggaacactattaaggttcattgaaatgtt c.*360
. . . . . . g.53794
ttcaatcattgccttcccattgatccttctaacatgctgttgacatcacacctaatattc c.*420
. . . . . . g.53854
agagggaatgggcaaggtatgagggaaggaaataaaaaataaaataaataaaatagaatg c.*480
. . . . . . g.53914
acacaaatttgagttttgtgaacccctgaacagatggtcttaaggacgttatctggaact c.*540
. . . . . . g.53974
ggagaaaagcagagttgagagacaattctatagattaaatcctggtaaggacaaacattg c.*600
. . . . . . g.54034
ccattagaagaaaagcttcaaaatagacctgtggcagatgtcacatgagtagaatttctg c.*660
. . . . . . g.54094
cccagccttaactgcattcagaggataatatcaatgaactaaacttgaactaaaaatttt c.*720
. . . . . . g.54154
ttaaacaaaaagttataaatgaagacacatggttgtgaatacaatgatgtatttctttat c.*780
. . . . . . g.54214
tttcacatacactctagctaaaagagcaagagtacacatcaacaaaaatggaaacaaggc c.*840
. . . . . . g.54274
tttggctgaaaaaaacatgcatttgacaaatcatgttaatagctagacaagaagaaagtt c.*900
. . . . . . g.54334
agctttgtaaacttctacttcatttgattcagagaaacagagcatgagttttcttaaaag c.*960
. . . . . . g.54394
taacaagaaaaggaacaaaaaaaatgaggtttgaaatcttttaccatggcaaaacattaa c.*1020
. . . . . . g.54454
catctttctcaaaaacatagagaaatctggaaaaatcaagaagataaaattctggaccag c.*1080
. . . . . . g.54514
ttagtgacattctttcaagcatacttgtaaaatgtttccttaaagtgttcttgggatgaa c.*1140
. . . . . . g.54574
aatgattgtcatgtctccaacaacagtgaactgatgttgttccttggaataaaagtcaat c.*1200
. g.54589
ccccaccttaaaaaa c.*1215
(downstream sequence)
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