(used for variant description)
(last modified August 26, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_015420.6 in the DCAF13 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000008.10, covering DCAF13 transcript NM_015420.6.
(upstream sequence)
. . . g.5037
aaaagacggaggagatccagttcgggctgacagtgag c.-241
. . . . . . g.5097
aggatgcagcccggtgtctgggcgggctcttaccggcgaagcggatcttcacgaggtcga c.-181
. . . . . . g.5157
gcggatgcagcgcaaggttggataagacgccgccgctcacgcccgctatcaggttctcat c.-121
. . . . . . g.5217
accggacgtggcggaataccgtgctccacgccgacgacccggacgccgactggccctggc c.-61
. . . . . . g.5277
ccgtcataggctcggggcccgtcgacaccacggcgcccagggccgcggaggtgggacgcg c.-1
. . . . . . g.5337
ATGCAGTGGCCGCCACCGTGGCGACGGTCGCCCCTTGTGAGCGCAACCCCACCTCCGGGA c.60
M Q W P P P W R R S P L V S A T P P P G p.20
. . . . . . g.5397
CCAACGAGAGGACTCTTATGCCCAAGGCGCGTGAGCGAAGCCGGAGACTCTAGTACTGAG c.120
P T R G L L C P R R V S E A G D S S T E p.40
. . . . . . g.5457
GGGGCAAGAACGGGGCACAGACACTACGTCACGCCGGCGGAAAGCGCGATGGAGGGGAGG c.180
G A R T G H R H Y V T P A E S A M E G R p.60
. . . . . . g.5517
TCCCAGCCTCTCCCGAGTCTCCGCCCTGCCTCGCCCACAAATGCTCCAGCCCACGGACGC c.240
S Q P L P S L R P A S P T N A P A H G R p.80
. . . . . . g.5577
GGAAGCGACTGCACAGCTAAAGAACCGCCCCTTGCTAACGTTTGCCGGCAAAACTACGGA c.300
G S D C T A K E P P L A N V C R Q N Y G p.100
. . . . . . g.5637
GCGGCGCAGGATCCAGTTGAGCCAGCAGGCCGCCGCTCCGCGAGTCACGTGACTGGAAGT c.360
A A Q D P V E P A G R R S A S H V T G S p.120
. . . . . . g.5697
AGTCTGGGAAAAGCGGAAGTCGCCTGTGGGAGGAGGTGGCGGTGGGCGGAACTCCTAGCG c.420
S L G K A E V A C G R R W R W A E L L A p.140
. . . . . . g.5757
GACACCTCGTGGAGTCCGGCCGGAAGAGCAACCGAGATGAAGGTGAAGATGCTGAGCCGG c.480
D T S W S P A G R A T E M K V K M L S R p.160
. . . . | 02 . . g.10564
AATCCGGACAATTATGTCCGCGAAACCAAGTTGGACTTACAGAGAG | TTCCAAGAAACTAT c.540
N P D N Y V R E T K L D L Q R V | P R N Y p.180
. . . . . . g.10624
GATCCTGCTTTACATCCTTTTGAGGTCCCACGAGAATATATAAGAGCTTTAAATGCTACC c.600
D P A L H P F E V P R E Y I R A L N A T p.200
. . . . . . g.10684
AAACTGGAACGAGTATTTGCAAAACCATTCCTTGCTTCGCTGGATGGTCACCGTGATGGA c.660
K L E R V F A K P F L A S L D G H R D G p.220
. . . . . . g.10744
GTCAATTGCTTGGCAAAGCATCCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGAT c.720
V N C L A K H P E K L A T V L S G A C D p.240
| 03 . . . . . . g.11315
GGAGAG | GTTAGAATTTGGAATCTAACTCAGCGGAATTGTATCCGTACAATACAAGCACAT c.780
G E | V R I W N L T Q R N C I R T I Q A H p.260
. . . . . | 04 . g.16348
GAAGGCTTTGTACGAGGAATATGTACTCGCTTTTGTGGGACTTCTTTTTTCACT | GTTGGT c.840
E G F V R G I C T R F C G T S F F T | V G p.280
. . . . . . g.16408
GATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAG c.900
D D K T V K Q W K M D G P G Y G D E E E p.300
. . | 05 . . . . g.17419
CCATTACATACAATATTAGGAAAG | ACAGTGTATACTGGGATTGATCATCACTGGAAAGAA c.960
P L H T I L G K | T V Y T G I D H H W K E p.320
. . . . . . g.17479
GCTGTTTTTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACTAATCCT c.1020
A V F A T C G Q Q V D I W D E Q R T N P p.340
. . . . . . g.17539
ATATGTTCAATGACCTGGGGATTTGACAGTATAAGTAGTGTTAAATTTAACCCAATTGAG c.1080
I C S M T W G F D S I S S V K F N P I E p.360
| 06 . . . . . . g.20958
| ACATTTCTCTTGGGAAGTTGTGCATCTGACAGGAATATAGTACTGTACGATATGAGGCAA c.1140
| T F L L G S C A S D R N I V L Y D M R Q p.380
. | 07 . . . . g.22987
GCTACTCCTTTGAAAAAG | GTTATCTTAGATATGAGAACAAATACAATCTGTTGGAACCCT c.1200
A T P L K K | V I L D M R T N T I C W N P p.400
. . . . | 08 . . g.25931
ATGGAAGCTTTCATTTTTACAGCAGCAAATGAAGATTATAA | CTTATATACTTTTGATATG c.1260
M E A F I F T A A N E D Y N | L Y T F D M p.420
. . . . . . g.25991
CGTGCACTGGACACTCCTGTAATGGTCCATATGGATCATGTATCTGCAGTGCTTGATGTG c.1320
R A L D T P V M V H M D H V S A V L D V p.440
. . . . . . g.26051
GATTACTCTCCCACTGGGAAGGAGTTTGTGTCTGCTAGTTTCGATAAATCTATTCGAATC c.1380
D Y S P T G K E F V S A S F D K S I R I p.460
. . | 09 . . . . g.30456
TTTCCTGTAGACAAAAGTCGAAGCAG | GGAGGTATATCATACAAAGAGAATGCAACATGTT c.1440
F P V D K S R S R | E V Y H T K R M Q H V p.480
. . . . . . g.30516
ATCTGTGTAAAATGGACTTCTGACAGCAAGTATATTATGTGTGGATCTGATGAAATGAAC c.1500
I C V K W T S D S K Y I M C G S D E M N p.500
. . . . | 10 . . g.31759
ATTCGCCTGTGGAAAGCTAATGCTTCTGAAAAATTGGGTGTG | CTTACATCACGAGAAAAA c.1560
I R L W K A N A S E K L G V | L T S R E K p.520
. . . . . . g.31819
GCAGCCAAGGATTATAACCAGAAATTGAAGGAGAAATTTCAGCATTATCCTCATATAAAA c.1620
A A K D Y N Q K L K E K F Q H Y P H I K p.540
. . . . . . g.31879
CGTATAGCTCGTCATCGACATCTACCAAAATCTATCTATAGCCAGATTCAGGAACAGCGC c.1680
R I A R H R H L P K S I Y S Q I Q E Q R p.560
. . | 11 . . . . g.33115
ATCATGAAAGAAGCTCGTCGACGAAA | GGAAGTGAATCGTATTAAACACAGCAAGCCTGGA c.1740
I M K E A R R R K | E V N R I K H S K P G p.580
. . . . . g.33169
TCTGTGCCACTTGTGTCAGAGAAGAAGAAACACGTAGTGGCAGTTGTAAAATAA c.1794
S V P L V S E K K K H V V A V V K X p.597
. . . . . . g.33229
ttggtattcctaacaatcctgatgtataattatttgttacttttgatttgagaactctac c.*60
. . . . . . g.33289
aaataaaagtgctgggactagattaattgcaaacattttagttatatgtgtagagcttta c.*120
. . . . . . g.33349
ttgttactccttttagctaccctgaaaaatgatccttaaaggtggcctagttggtaagac c.*180
. . . . . . g.33409
tgttttatccttaatctgcattcttctttcattgtagaatacagtatttgcaactcattt c.*240
. . . . . . g.33469
tttcttgtttttattacagatatacttactttctctttgatctattattgtagacactat c.*300
. . . . . . g.33529
acattcaaattgacatttaagaccaaacatctcttatgttatctttaatattactttgaa c.*360
. . . . . . g.33589
taatgattgcaatgatgtttcttcctgtgattccacataacatttagaataatgatgtca c.*420
. . . . . . g.33649
attttttacaactgaatttatttctagtgctttacttatatttggctttttgactctttt c.*480
. . . . . . g.33709
aaaacaatcagcctgcatttatataacttttataaataataatataatttgggtcaagtt c.*540
. . . g.33740
aagatattaaaagttcctttcagcattgaaa c.*571
(downstream sequence)
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