(used for variant description)
(last modified February 1, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_004407.3 in the DMP1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000004.11, covering DMP1 transcript NM_004407.3.
(upstream sequence)
. . . . g.5044
ttcattgggcatagatttcctctttgagaacatcaacctgattt c.-61
. . . . | 02 . g.11191
ttgagactttttgaaaaaattctttgtgaactacggagg | gtagaggtatcacacccaact c.-1
. . . . . | 03 . g.11736
ATGAAGATCAGCATCCTGCTCATGTTCCTTTGGGGATTATCCTGTGCTCTCCCA | GTAACC c.60
M K I S I L L M F L W G L S C A L P | V T p.20
. . . . | 04 . . g.13936
AGGTATCAAAATAATGAATCTGAGGATTCTGAAGAATGGAAG | GGTCATTTGGCTCAGGCA c.120
R Y Q N N E S E D S E E W K | G H L A Q A p.40
. | 05 . . . . . g.14174
CCAACACCACCCTTG | GAGAGCAGTGAGTCATCAGAAGGCAGTAAAGTTAGCTCAGAGGAA c.180
P T P P L | E S S E S S E G S K V S S E E p.60
| 06 . . . . . . g.16717
CAG | GCAAATGAAGACCCCAGTGACAGCACTCAGTCAGAGGAGGGCCTGGGCTCTGATGAT c.240
Q | A N E D P S D S T Q S E E G L G S D D p.80
. . . . . . g.16777
CATCAATACATTTATAGGCTAGCTGGTGGCTTCTCCAGGAGCACAGGAAAAGGAGGAGAT c.300
H Q Y I Y R L A G G F S R S T G K G G D p.100
. . . . . . g.16837
GATAAAGATGACGATGAAGATGACAGTGGAGATGACACCTTTGGTGACGATGACAGTGGC c.360
D K D D D E D D S G D D T F G D D D S G p.120
. . . . . . g.16897
CCAGGGCCCAAAGACAGACAAGAAGGAGGAAACTCCAGACTGGGAAGTGATGAGGACTCT c.420
P G P K D R Q E G G N S R L G S D E D S p.140
. . . . . . g.16957
GATGACACCATACAAGCCAGTGAAGAGAGTGCCCCACAAGGGCAAGACAGTGCCCAAGAT c.480
D D T I Q A S E E S A P Q G Q D S A Q D p.160
. . . . . . g.17017
ACCACCAGTGAGAGCAGGGAACTTGACAATGAGGACCGGGTGGACAGCAAGCCTGAGGGA c.540
T T S E S R E L D N E D R V D S K P E G p.180
. . . . . . g.17077
GGTGACTCCACTCAAGAGAGTGAGAGTGAAGAGCACTGGGTGGGAGGTGGCAGTGATGGG c.600
G D S T Q E S E S E E H W V G G G S D G p.200
. . . . . . g.17137
GAGAGCAGCCATGGAGACGGCTCCGAGTTGGACGATGAGGGAATGCAGAGTGATGACCCA c.660
E S S H G D G S E L D D E G M Q S D D P p.220
. . . . . . g.17197
GAGAGCATCAGGAGTGAAAGGGGAAACTCCAGAATGAACAGTGCAGGCATGAAATCAAAA c.720
E S I R S E R G N S R M N S A G M K S K p.240
. . . . . . g.17257
GAATCTGGAGAAAACAGTGAGCAAGCAAACACTCAAGATTCAGGTGGCAGCCAATTGCTG c.780
E S G E N S E Q A N T Q D S G G S Q L L p.260
. . . . . . g.17317
GAGCATCCCAGTAGGAAAATTTTTAGGAAGTCTCGCATCTCAGAGGAAGATGACAGAAGC c.840
E H P S R K I F R K S R I S E E D D R S p.280
. . . . . . g.17377
GAGCTTGATGACAACAACACAATGGAAGAAGTCAAGAGTGACTCTACAGAAAACAGCAAC c.900
E L D D N N T M E E V K S D S T E N S N p.300
. . . . . . g.17437
TCCAGAGACACTGGCCTCAGCCAACCCAGGAGAGACAGCAAGGGTGACTCTCAAGAAGAC c.960
S R D T G L S Q P R R D S K G D S Q E D p.320
. . . . . . g.17497
AGCAAGGAGAATCTGTCCCAGGAAGAGAGCCAAAACGTAGATGGTCCCAGCAGTGAGTCC c.1020
S K E N L S Q E E S Q N V D G P S S E S p.340
. . . . . . g.17557
AGCCAAGAGGCCAACCTGTCATCTCAAGAGAACAGCAGTGAGTCTCAGGAAGAGGTGGTG c.1080
S Q E A N L S S Q E N S S E S Q E E V V p.360
. . . . . . g.17617
AGTGAGTCCAGGGGAGATAACCCCGACCCCACAACTAGTTATGTAGAAGACCAGGAAGAC c.1140
S E S R G D N P D P T T S Y V E D Q E D p.380
. . . . . . g.17677
AGTGACTCCAGCGAGGAGGACAGCTCGCACACACTCTCCCACTCAAAAAGTGAATCCAGA c.1200
S D S S E E D S S H T L S H S K S E S R p.400
. . . . . . g.17737
GAGGAGCAAGCAGACAGCGAATCCAGTGAGAGCCTCAACTTCTCAGAGGAAAGCCCGGAG c.1260
E E Q A D S E S S E S L N F S E E S P E p.420
. . . . . . g.17797
TCCCCTGAGGATGAGAACAGCTCCAGCCAGGAGGGCCTCCAGTCTCACAGCAGCTCAGCA c.1320
S P E D E N S S S Q E G L Q S H S S S A p.440
. . . . . . g.17857
GAGAGTCAGAGCGAGGAAAGCCATTCTGAGGAAGACGACAGTGACTCTCAAGACAGCAGC c.1380
E S Q S E E S H S E E D D S D S Q D S S p.460
. . . . . . g.17917
AGATCCAAAGAAGATAGCAACTCCACGGAGAGCAAATCAAGCAGTGAGGAAGATGGCCAG c.1440
R S K E D S N S T E S K S S S E E D G Q p.480
. . . . . . g.17977
TTGAAAAACATTGAGATAGAGAGCCGGAAATTAACAGTTGATGCCTATCACAACAAACCC c.1500
L K N I E I E S R K L T V D A Y H N K P p.500
. . . . g.18019
ATTGGGGACCAAGATGACAATGACTGCCAAGACGGCTATTAG c.1542
I G D Q D D N D C Q D G Y X p.513
. . . . . . g.18079
catcagctgtcctaagaagcagttgtcacataaaggagtcttagggacttgaaaatgtat c.*60
. . . . . . g.18139
catgataactataatttattgatgttttgatcaaaagaataaccagatgccatatttttc c.*120
. . . . . . g.18199
ctgaaaggaattgctggacattacacttgtttttagggtgtcatcatttcacagaggttt c.*180
. . . . . . g.18259
aaatactgtggagtgacaccagaacacagccaaagaggctagaagcaagaaaggatctgc c.*240
. . . . . . g.18319
atgataactttgcagctgagatagttcctaattcatcaacgtaacaaacaaagctattgg c.*300
. . . . . . g.18379
gtgtccatgatataccaggcactatgctaggtgttgagaatgtaaagcaggttaagactt c.*360
. . . . . . g.18439
gtttcttgctcctgaggagcgtatagaaggacccacaaagctacagagttaaagagggat c.*420
. . . . . . g.18499
atgtataagagaaacaagaattgttacaacccagtatggtgagtgccaagacagagagct c.*480
. . . . . . g.18559
atgaacacgatatctatctgggaacactgagaagggtgaccaatgcgttggagaacgagg c.*540
. . . . . . g.18619
gagggcttcatagcagaagacattggagttggaaggttgcatagggtttcctcattggag c.*600
. . . . . . g.18679
accgggaaattctattcttgggataaataatagtaaattctataggattcaatacttagt c.*660
. . . . . . g.18739
ttgcaaaagcactttgaaattatggcacagtgagttgttttggataagaaaatctttttc c.*720
. . . . . . g.18799
tcccaattaatttaccaattcatcatttttttttttttgtagaactcccataaacatcac c.*780
. . . . . . g.18859
cttactaatcactggtgatgataagaaggattgggtcaggaagagtgggagaaagaaatt c.*840
. . . . . . g.18919
cctctttacgtagatactttttagctttattttttctaaaatcagtttgcgtgcaatgct c.*900
. . . . . . g.18979
agaaaaaaactgttctctgagtcctttacagagcaaaattctgtatgtaagattcaattg c.*960
. . . . . . g.19039
atttttgacaaataccatttgaaatattacctcaacataaaatacttgttttgtaataaa c.*1020
. . g.19060
gattataatacccagaagaaa c.*1041
(downstream sequence)
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