dead end homolog 1 (zebrafish) (DND1) - coding DNA reference sequence

(used for variant description)

(last modified September 8, 2026)


This file was created to facilitate the description of sequence variants on transcript NM_194249.2 in the DND1 gene based on a coding DNA reference sequence following the HGVS recommendations.

The sequence was taken from NC_000005.9, covering DND1 transcript NM_194249.2.


Please note that introns are available by clicking on the exon numbers above the sequence.
 (upstream sequence)
                     .         .         .         .                g.5044
                 ggaggaagttataaagagggtacgagggggccagctggagagcc       c.-1

          .         .     | 02   .         .         .         .    g.5234
 ATGCAGTCCAAGCGGGATTGTGAG | CTGTGGTGTGAGAGGGTGAATCCAGAGAACAAGGCG    c.60
 M  Q  S  K  R  D  C  E   | L  W  C  E  R  V  N  P  E  N  K  A      p.20

          .         .         .         .         .         .       g.5294
 GCGCTGGAGGCGTGGGTCAGGGAGACAGGCATCCGCCTGGTGCAGGTGAACGGGCAGAGG       c.120
 A  L  E  A  W  V  R  E  T  G  I  R  L  V  Q  V  N  G  Q  R         p.40

          .         .   | 03     .         .         .         .    g.5718
 AAGTATGGCGGGCCACCCCCAG | GCTGGGTGGGCAGCCCGCCGCCAGCTGGGTCAGAGGTG    c.180
 K  Y  G  G  P  P  P  G |   W  V  G  S  P  P  P  A  G  S  E  V      p.60

          .         .         .         .         .         .       g.5778
 TTCATCGGGCGGCTGCCTCAGGACGTGTACGAGCACCAGCTTATCCCGCTGTTCCAGCGC       c.240
 F  I  G  R  L  P  Q  D  V  Y  E  H  Q  L  I  P  L  F  Q  R         p.80

          .         .         .         .         .         .       g.5838
 GTGGGCCGCCTCTACGAGTTCCGCCTGATGATGACCTTCAGCGGCCTGAACCGCGGCTTC       c.300
 V  G  R  L  Y  E  F  R  L  M  M  T  F  S  G  L  N  R  G  F         p.100

          .         .         .         .         .         .       g.5898
 GCCTATGCCCGCTACAGCTCGAGGCGCGGCGCGCAGGCCGCCATCGCCACGCTGCACAAC       c.360
 A  Y  A  R  Y  S  S  R  R  G  A  Q  A  A  I  A  T  L  H  N         p.120

          .         .         .         .         .         .       g.5958
 CATCCGCTGCGGCCGTCCTGCCCGCTGCTCGTGTGCCGCAGCACCGAGAAGTGTGAGCTG       c.420
 H  P  L  R  P  S  C  P  L  L  V  C  R  S  T  E  K  C  E  L         p.140

          .         .         .         .         .         .       g.6018
 AGCGTTGACGGCCTGCCGCCGAATCTGACCCGCAGCGCGCTGCTGCTCGCGCTGCAGCCG       c.480
 S  V  D  G  L  P  P  N  L  T  R  S  A  L  L  L  A  L  Q  P         p.160

          .         .         .         .         .         .       g.6078
 CTGGGTCCCGGCTTGCAGGAGGCGCGGCTGCTGCCCAGCCCCGGACCGGCGCCCGGGCAG       c.540
 L  G  P  G  L  Q  E  A  R  L  L  P  S  P  G  P  A  P  G  Q         p.180

          .         .         .         .         .         .       g.6138
 ATCGCTCTGCTCAAATTCAGCTCGCACCGGGCCGCTGCCATGGCCAAAAAGGCCCTGGTG       c.600
 I  A  L  L  K  F  S  S  H  R  A  A  A  M  A  K  K  A  L  V         p.200

      | 04   .         .         .         .         .         .    g.6892
 GAAG | GGCAGTCACACCTCTGTGGAGAGCAGGTGGCTGTGGAGTGGCTCAAGCCAGACCTG    c.660
 E  G |   Q  S  H  L  C  G  E  Q  V  A  V  E  W  L  K  P  D  L      p.220

          .         .         .         .         .         .       g.6952
 AAGCAGCGACTTCGCCAGCAGCTTGTGGGTCCCTTCTTGCGGTCCCCACAGCCAGAGGGC       c.720
 K  Q  R  L  R  Q  Q  L  V  G  P  F  L  R  S  P  Q  P  E  G         p.240

          .         .         .         .         .         .       g.7012
 AGCCAGTTGGCTTTGGCAAGGGACAAGTTAGGGTTCCAAGGGGCTCGGGCTACCCTGCAG       c.780
 S  Q  L  A  L  A  R  D  K  L  G  F  Q  G  A  R  A  T  L  Q         p.260

          .         .         .         .         .         .       g.7072
 TTGCTGTGCCAACGAATGAAGCTGGGCAGCCCTGTGTTCCTCACCAAGTGTTTGGGCATA       c.840
 L  L  C  Q  R  M  K  L  G  S  P  V  F  L  T  K  C  L  G  I         p.280

          .         .         .         .         .         .       g.7132
 GGACCTGCTGGCTGGCACCGCTTCTGGTACCAGGTGGTGATTCCTGGGCATCCGGTGCCC       c.900
 G  P  A  G  W  H  R  F  W  Y  Q  V  V  I  P  G  H  P  V  P         p.300

          .         .         .         .         .         .       g.7192
 TTCAGCGGCCTCATCTGGGTTGTGCTGACCCTAGATGGCCGGGATGGGCATGAGGTGGCC       c.960
 F  S  G  L  I  W  V  V  L  T  L  D  G  R  D  G  H  E  V  A         p.320

          .         .         .         .         .         .       g.7252
 AAGGATGCTGTGTCTGTACGGCTGCTGCAGGCACTCAGTGAGTCTGGGGCCAACCTCCTG       c.1020
 K  D  A  V  S  V  R  L  L  Q  A  L  S  E  S  G  A  N  L  L         p.340

          .         .         .         .                           g.7294
 TGGTCTGCTGGGGCTGAGGCAGGTACCATGGTTAAACAGTGA                         c.1062
 W  S  A  G  A  E  A  G  T  M  V  K  Q  X                           p.353

          .         .         .         .         .         .       g.7354
 ctccattctttctccacaggcaccctgaatgggcatgcagagcctgtgtcaggccccatc       c.*60

          .         .         .         .         .         .       g.7414
 ccagcaggcctgggtggccactttctgacccccaaaggtggggaggggcatgggcccagg       c.*120

          .         .         .         .         .         .       g.7474
 cccatcagcctccctgctgggacagggacctatggcacctgggggcagcttaggtttggg       c.*180

          .         .         .         .         .         .       g.7534
 ttaagttgtggtgaggggccttgccctcccgctcccagcccagggtccaacctgacccag       c.*240

          .         .         .         .         .         .       g.7594
 tgatcttccatggccgttccttgtcccacccccacccgatcataccttcccccctctgcc       c.*300

          .         .         .         .         .         .       g.7654
 acagcttagcatgaatcttctttattgtcctgatttgtcctctttgttggtttttatttg       c.*360

          .         .         .         .         .         .       g.7714
 tggggaagggcagctgagccaaaggggtcagaaattctgccctttgcctccaccacatgg       c.*420

          .         .         .         .         .         .       g.7774
 cattctggttttggtttctgtatagttttgggtctttctatgctggttgtatttatatta       c.*480

          .                                                         g.7791
 aacccctggttagtata                                                  c.*497

 (downstream sequence)
Legend:
Nucleotide numbering (following the rules of the HGVS for a 'Coding DNA Reference Sequence') is indicated at the right of the sequence, counting the A of the ATG translation initiating Methionine as 1. Every 10th nucleotide is indicated by a "." above the sequence. The Dead end homolog 1 (zebrafish) protein sequence is shown below the coding DNA sequence, with numbering indicated at the right starting with 1 for the translation initiating Methionine. Every 10th amino acid is shown in bold. The position of introns is indicated by a vertical line, splitting the two exons. The start of the first exon (transcription initiation site) is indicated by a '\', the end of the last exon (poly-A addition site) by a '/'. The exon number is indicated above the first nucleotide(s) of the exon. To aid the description of frame shift variants, all stop codons in the +1 frame are shown in bold while all stop codons in the +2 frame are underlined.

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