(used for variant description)
(last modified June 21, 2018)
This file was created to facilitate the description of sequence variants on transcript NM_001267585.1 in the FBXW10 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000017.10, covering FBXW10 transcript NM_001267585.1.
(upstream sequence)
. . . . . g.5052
acggtaaagccatgtttccaaggaggtctgtacaaaaagccagacttctgct c.-181
. . . . . . g.5112
ggcagttactgagagagataggctttccatccatggcagccatttacttttgctctggga c.-121
. . . . . . g.5172
gacgtttgtaatagaaaaggcacaactggggtatttattcattccccccgttcctctagt c.-61
. . . . . . g.5232
gtttggtggcgttgccgttgcaagtgcgcagggctaaaatggactggttatcttaggatc c.-1
. . . . . . g.5292
ATGGAAAACCTGGAATCAAGGCTCAAGAATGCCCCCTATTTTCGTTGTGAGAAGGGAACC c.60
M E N L E S R L K N A P Y F R C E K G T p.20
. . . . . . g.5352
GATTCCATCCCTCTATGCCGGAAGTGTGAGACGTGTGTCTTAGCCTGGAAGATCTTCTCT c.120
D S I P L C R K C E T C V L A W K I F S p.40
. . . . . . g.5412
ACCAAAGAGTGGTTCTGCAGGATCAATGACATATCACAGAGGAGGTTTCTAGTTGGCATT c.180
T K E W F C R I N D I S Q R R F L V G I p.60
. . . . . . g.5472
CTGAAGCAGTTAAATAGCTTATATTTGTTACACTATTTCCAAAATATCCTTCAGACCACA c.240
L K Q L N S L Y L L H Y F Q N I L Q T T p.80
. . . . . . g.5532
CAGGGAAAGGATTTCATCTATAACAGGTCCCGGATCAACCTCAGCAAGAAAGAGGGGAAA c.300
Q G K D F I Y N R S R I N L S K K E G K p.100
. . . . . . g.5592
GTTGTGAAGTCCTCCTTGAACCAAATGTTGGATAAAACAGTAGAACAGAAGATGAAAGAG c.360
V V K S S L N Q M L D K T V E Q K M K E p.120
. . . . . . g.5652
ATCTTGTACTGGTTTGCGAACAGCACCCAGTGGACCAAGGCGAATTATACTCTCTTACTG c.420
I L Y W F A N S T Q W T K A N Y T L L L p.140
. . . . . . g.5712
CTGCAGATGTGCAACCCCAAATTACTGCTCACTGCTGCCAATGTGATCAGAGTCCTGTTT c.480
L Q M C N P K L L L T A A N V I R V L F p.160
. . | 02 . . . . g.8963
CTGAGAGAGGAGAACAATATCTCAG | GGCTCAATCAAGACATCACAGATGTGTGTTTTTCC c.540
L R E E N N I S G | L N Q D I T D V C F S p.180
. . . . . . g.9023
CCTGAGAAAGACCACAGCTCCAAGTCTGCGACCTCACAAGTCTATTGGACAGCCAAAACT c.600
P E K D H S S K S A T S Q V Y W T A K T p.200
. . . . . . g.9083
CAGCACACATCCCTTCCTTTGTCCAAAGCCCCAGAAAATGAACACTTGCTTGGGGCAGCA c.660
Q H T S L P L S K A P E N E H L L G A A p.220
. | 03 . . . . . g.10759
TCTAACCCTG | AGGAACCATGGAGGAATTCACTCCGGTGTATATCCGAAATGAATAGGCTG c.720
S N P E | E P W R N S L R C I S E M N R L p.240
. . . . . . g.10819
TTTTCTGGAAAAGGAGACATAACCAAGCCAGGGTACGATCCCTGCAATCTATTGGTTGAC c.780
F S G K G D I T K P G Y D P C N L L V D p.260
. . . . . . g.10879
CTGGATGACATCAGAGACCTGTCTTCTGGGTTCAGCAAATACCGAGACTTCATCCGTTAC c.840
L D D I R D L S S G F S K Y R D F I R Y p.280
. . . | 04 . . . g.11026
CTGCCCATCCACCTCTCCAAGTACATTCTAA | GAATGCTGGATAGACACACCCTGAACAAG c.900
L P I H L S K Y I L R | M L D R H T L N K p.300
. . . . . . g.11086
TGCGCCTCTGTGAGCCAGCACTGGGCCGCCATGGCTCAACAGGTCAAGATGGACTTGTCA c.960
C A S V S Q H W A A M A Q Q V K M D L S p.320
. . . | 05 . . g.11939
GCGCACGGCTTCATTCAGAACCAGATTACCTTCTTGCAG | GGGTCCTACACAAGAGGAATT c.1020
A H G F I Q N Q I T F L Q | G S Y T R G I p.340
. . . . . . g.11999
GATCCTAATTATGCCAATAAGGTTTCTATCCCAGTTCCTAAAATGGTAGATGACGGGAAG c.1080
D P N Y A N K V S I P V P K M V D D G K p.360
. . . . | 06 . . g.17050
AGCATGCGTGTGAAACATCCGAAGTGGAAGCTGAGAACGAAG | AATGAGTACAACCTGTGG c.1140
S M R V K H P K W K L R T K | N E Y N L W p.380
. . . . . . g.17110
ACTGCATACCAGAACGAGGAAACGCAGCAGGTCCTGATAGAGGAGAGAAATGTTTTCTGT c.1200
T A Y Q N E E T Q Q V L I E E R N V F C p.400
. . . | 07 . . . g.19320
GGGACCTACAATGTTCGCATTCTCTCTGACAC | GTGGGATCAAAACCGAGTCATCCACTAT c.1260
G T Y N V R I L S D T | W D Q N R V I H Y p.420
. . . . . . g.19380
TCCGGGGGAGATCTGATAGCTGTGTCATCTAATCGAAAGATCCATCTTCTGGACATCATA c.1320
S G G D L I A V S S N R K I H L L D I I p.440
. . . . . . g.19440
CAAGTGAAAGCGATACCCGTTGAATTCCGAGGCCATGCTGGGAGTGTCCGGGCCCTCTTC c.1380
Q V K A I P V E F R G H A G S V R A L F p.460
. . . . . | 08 . g.25736
CTGTGTGAGGAGGAAAACTTTCTCCTAAGCGGGAGCTATGACCTAAGTATCAG | ATACTGG c.1440
L C E E E N F L L S G S Y D L S I R | Y W p.480
. . . . . . g.25796
GATCTGAAAAGTGGGGTTTGCACACGAATCTTCGGTGGTCACCAGGGGACTATCACTTGC c.1500
D L K S G V C T R I F G G H Q G T I T C p.500
. . . . . | 09 . g.27706
ATGGACTTGTGTAAGAACAGGCTCGTATCTGGAGGAAGAGATTGCCAGGTAAAAG | TATGG c.1560
M D L C K N R L V S G G R D C Q V K V | W p.520
. . . . . . g.27766
GATGTAGACACAGGGAAGTGCCTGAAGACGTTTAGACACAAAGACCCCATCTTGGCCACC c.1620
D V D T G K C L K T F R H K D P I L A T p.540
. . . . . . g.27826
AGGATCAATGATACCTACATTGTGAGCAGCTGTGAGCGAGGGCTGGTGAAAGTGTGGCAC c.1680
R I N D T Y I V S S C E R G L V K V W H p.560
. . | 10 . . . . g.29557
ATTGCCATGGCCCAGTTGGTAAAG | ACTCTCAGTGGCCATGAGGGAGCCGTGAAATGCCTG c.1740
I A M A Q L V K | T L S G H E G A V K C L p.580
. . . . . . g.29617
TTCTTTGACCAGTGGCATCTCCTCTCAGGAAGTACTGATGGCCTGGTCATGGCCTGGAGC c.1800
F F D Q W H L L S G S T D G L V M A W S p.600
. . . . | 11. . g.30927
ATGGTGGGGAAGTACGAGCGCTGCCTGATGGCCTTCAAGCATCCCAA | GGAGGTGCTCGAC c.1860
M V G K Y E R C L M A F K H P K | E V L D p.620
. . . . . . g.30987
GTGTCCCTTCTCTTCCTCCGGGTCATCAGCGCCTGTGCAGATGGCAAGATCCGAATTTAC c.1920
V S L L F L R V I S A C A D G K I R I Y p.640
. . . . . . g.31047
AATTTCCTCAACGGGAACTGTATGAAGGTGTTAAAAGCCAATGGCAGAGGTGATCCTGTG c.1980
N F L N G N C M K V L K A N G R G D P V p.660
. . | 12 . . . . g.33433
CTGTCCTTCTTTATTCAGGGCAACAG | GATGGTGGTCAACACAGAGAGCAATGTTCTCATG c.2040
L S F F I Q G N R | M V V N T E S N V L M p.680
. . . . . . g.33493
TTCCAGTTTGAGCACATAAAGTGGCAGTATGCCGTGGAAAAAACGAAACAAAAGAAGAAT c.2100
F Q F E H I K W Q Y A V E K T K Q K K N p.700
. . . . . . g.33553
AAGGAGAAAGAGGAGGAAAAAGAAGAAAATAGTCTCATGGAAATTCTCTCTAAGTGTAAT c.2160
K E K E E E K E E N S L M E I L S K C N p.720
. . . . . . g.33613
ATTCAGGTTCACAGCCCAAGAGAGTCTGTATCCAGTAAACAAACTGTGATCCAAGAGCTC c.2220
I Q V H S P R E S V S S K Q T V I Q E L p.740
. . . . . | 13 g.36125
CTACCAGGCAAACCTCCCAAGTCCCGAGTACTCCTGAAGCCGGCCAAGTTCTCTTCAG | CA c.2280
L P G K P P K S R V L L K P A K F S S A | p.760
. . . . . | 14 . g.39467
GTGTTAATAGAGGAACTTCAAAGTCAAGGAAAGTCAAAATCACCCCGAAGAGATG | CAGAT c.2340
V L I E E L Q S Q G K S K S P R R D A | D p.780
. . . . . . g.39527
GATGTGGAGAAAGCACAAAAACAAGGACAATTGGAAACTCCTGGAAAACTGCCCAGTCAC c.2400
D V E K A Q K Q G Q L E T P G K L P S H p.800
. . . . . . g.39587
CCAAAGAAAAAGTCTTGGAAAATCCCTATGTCACCTGACCAATTCCTCCTGACTGTTAGC c.2460
P K K K S W K I P M S P D Q F L L T V S p.820
. . . . . . g.39647
GCCCTGCAGCACGCCCATAATTCCGGGGAATTTGCCTATCCCTGTAGGCCCCAAACAGAA c.2520
A L Q H A H N S G E F A Y P C R P Q T E p.840
. . . . . . g.39707
ATTACTGATGTCTGGGGACCTTCAATTTCATACCCAAGGAAGGTCTTGAATTTCAAAGGA c.2580
I T D V W G P S I S Y P R K V L N F K G p.860
. . . . . . g.39767
AAATCAATCCAACGTGCAGTTGATCGGTTGAGATTGAGCAATCCTCCTATAGATGTGAAA c.2640
K S I Q R A V D R L R L S N P P I D V K p.880
. . . . . . g.39827
CGAACCAGTATTCCCCTTGAAATCCAGAAACTGCAGCCCAACTTGAAGATCTCTTTGCAC c.2700
R T S I P L E I Q K L Q P N L K I S L H p.900
. . . . . . g.39887
AGTCCTAGAGTCCAGTCCACCATACCCCAGCCCATGATTATCCGCTCCAGGTTCTCTGGC c.2760
S P R V Q S T I P Q P M I I R S R F S G p.920
. . . . . . g.39947
AGCTTAAAGGGTGGAGACCAAGTGACCAGTTCAATTGAAAGGGCTGTGTGCAGTACGGGT c.2820
S L K G G D Q V T S S I E R A V C S T G p.940
. . . . . . g.40007
CCCCTGACCAGTATGCAGGTCATTAAACCAAACCGCATGCTAGCTCCACAAGTGGGCACA c.2880
P L T S M Q V I K P N R M L A P Q V G T p.960
. . . . . . g.40067
GCCACCCTGTCTCTTAAGAAAGAACGGCCTCGCATCTATACAGCCCTTGATCCTTTTAGA c.2940
A T L S L K K E R P R I Y T A L D P F R p.980
. . . . . . g.40127
GTGAACACTGAGTTCGTGCTGTTGACCGTGAAGGAGGAGAAGGAGCACCAGGAAGCCAAG c.3000
V N T E F V L L T V K E E K E H Q E A K p.1000
. . . . . . g.40187
ATGAAGGAATATCAGGCCAGGGAGTCCACTGGAGTGGTTGATCCAGGAAAAGTCAGCAAA c.3060
M K E Y Q A R E S T G V V D P G K V S K p.1020
. . . . . . g.40247
GCTGCATGGATCAGGAAGATCAAAGGCCTGCCTATTGATAATTTCACGAAGCAAGGGAAA c.3120
A A W I R K I K G L P I D N F T K Q G K p.1040
. . . g.40286
ACAGCGGCCCCTGAACTTGGACAAAATGTATTTATCTAA c.3159
T A A P E L G Q N V F I X p.1052
. . . . . g.40337
accagccttgggaaattacaatgttttacaataaacagaaagccaagcgga c.*51
(downstream sequence)
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