(used for variant description)
(last modified October 27, 2021)
This file was created to facilitate the description of sequence variants on transcript NM_001460.3 in the FMO2 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000001.10, covering FMO2 transcript NM_001460.3.
(upstream sequence)
. . . . . g.5057
tttctcacagccacctccaactcttaaaaacgcttccaactgcctcccagcacacaa c.-61
. . . . . . | 02 g.5465
ccaagggagaaaactattctgtcaaagagacggtgccaaaaggcaaaaacaaag | gagctg c.-1
. . . . . . g.5525
ATGGCAAAGAAGGTAGCTGTGATTGGAGCTGGGGTCAGTGGCCTAATTTCTCTGAAGTGC c.60
M A K K V A V I G A G V S G L I S L K C p.20
. . . . . . g.5585
TGTGTGGATGAGGGACTTGAGCCCACTTGCTTTGAGAGAACTGAAGATATTGGAGGAGTG c.120
C V D E G L E P T C F E R T E D I G G V p.40
. | 03 . . . . . g.13134
TGGAGGTTCAAA | GAGAATGTGGAAGATGGCCGAGCAAGTATCTATCAATCTGTCGTTACC c.180
W R F K | E N V E D G R A S I Y Q S V V T p.60
. . . . . . g.13194
AACACCAGCAAAGAAATGTCCTGTTTCAGTGACTTTCCAATGCCTGAAGATTTTCCAAAC c.240
N T S K E M S C F S D F P M P E D F P N p.80
. . . . . . g.13254
TTCCTGCATAATTCTAAACTTCTGGAATATTTCAGGATTTTTGCTAAAAAATTTGATCTG c.300
F L H N S K L L E Y F R I F A K K F D L p.100
. . | 04 . . . . g.16439
CTAAAATATATTCAGTTCCAG | ACAACTGTCCTTAGTGTGAGAAAATGTCCAGATTTCTCA c.360
L K Y I Q F Q | T T V L S V R K C P D F S p.120
. . . . . . g.16499
TCCTCTGGCCAATGGAAGGTTGTCACTCAGAGCAACGGCAAGGAGCAGAGTGCTGTCTTT c.420
S S G Q W K V V T Q S N G K E Q S A V F p.140
. . . . . . g.16559
GACGCAGTTATGGTTTGCAGTGGCCACCACATTCTACCTCATATCCCACTGAAGTCATTT c.480
D A V M V C S G H H I L P H I P L K S F p.160
| 05 . . . . . . g.19153
CCAG | GTATGGAGAGGTTCAAAGGCCAATATTTCCATAGCCGCCAATACAAGCATCCAGAT c.540
P G | M E R F K G Q Y F H S R Q Y K H P D p.180
. . . . . . g.19213
GGATTTGAGGGAAAACGCATCCTGGTGATTGGAATGGGAAACTCAGGCTCAGATATTGCT c.600
G F E G K R I L V I G M G N S G S D I A p.200
. . | 06. . . . g.23649
GTTGAGCTGAGTAAGAATGCTGCTCAG | GTTTTTATCAGCACCAGGCATGGCACCTGGGTC c.660
V E L S K N A A Q | V F I S T R H G T W V p.220
. . . . . . g.23709
ATGAGCCGTATCTCTGAAGATGGCTATCCTTGGGACTCAGTGTTCCACACCCGGTTTCGT c.720
M S R I S E D G Y P W D S V F H T R F R p.240
. . . . . . g.23769
TCTATGCTCCGCAATGTACTGCCACGAACAGCTGTAAAATGGATGATAGAACAACAGATG c.780
S M L R N V L P R T A V K W M I E Q Q M p.260
. . . . | 07. . g.25043
AATCGGTGGTTCAACCATGAAAATTATGGCCTTGAGCCTCAAAACAA | ATACATTATGAAG c.840
N R W F N H E N Y G L E P Q N K | Y I M K p.280
. . . . . . g.25103
GAACCTGTACTAAATGATGATGTCCCAAGTCGTCTACTCTGTGGAGCCATCAAGGTGAAA c.900
E P V L N D D V P S R L L C G A I K V K p.300
. . . . . . g.25163
TCTACAGTGAAAGAGCTCACAGAAACTTCTGCCATCTTTGAGGATGGAACAGTGGAGGAG c.960
S T V K E L T E T S A I F E D G T V E E p.320
. . . . . . g.25223
AACATTGATGTCATCATTTTTGCAACAGGATATAGTTTCTCTTTTCCCTTCCTTGAAGAT c.1020
N I D V I I F A T G Y S F S F P F L E D p.340
. . . . . . g.25283
TCACTCGTTAAAGTAGAGAATAATATGGTCTCACTGTATAAATACATATTCCCCGCTCAC c.1080
S L V K V E N N M V S L Y K Y I F P A H p.360
. . . . . . g.25343
CTGGACAAGTCAACCCTCGCGTGCATTGGTCTCATCCAGCCCCTAGGTTCCATTTTCCCA c.1140
L D K S T L A C I G L I Q P L G S I F P p.380
. . . . | 08 . . g.27486
ACTGCTGAACTTCAAGCTCGTTGGGTGACAAGAGTTTTCAAAG | GCTTGTGTAGCCTGCCC c.1200
T A E L Q A R W V T R V F K G | L C S L P p.400
. . . . . | 09 . g.28549
TCAGAGAGAACTATGATGATGGACATTATCAAAAGGAATGAAAAAAGAATTGACCT | GTTT c.1260
S E R T M M M D I I K R N E K R I D L | F p.420
. . . . . . g.28609
GGAGAAAGCCAGAGCCAGACGTTGCAGACCAATTATGTTGACTACTTGGACGAGCTCGCC c.1320
G E S Q S Q T L Q T N Y V D Y L D E L A p.440
. . . . . . g.28669
TTAGAGATAGGTGCGAAGCCAGATTTCTGCTCTCTCTTGTTCAAAGATCCTAAACTGGCT c.1380
L E I G A K P D F C S L L F K D P K L A p.460
. . . g.28705
GTGAGACTCTATTTCGGACCCTGCAACTCCTATTAG c.1416
V R L Y F G P C N S Y X p.471
. . . . . . g.28765
tatcgcctggttgggcctgggcaatgggaaggagccagaaatgccatcttcacccagaaa c.*60
. . . . . . g.28825
caaagaatactgaagccactcaagactcgggccctgaaggattcatctaatttctcagtt c.*120
. . . . . . g.28885
tcttttctgttgaaaatcctgggccttcttgctgttgttgtggcctttttttgccaactt c.*180
. . . . . . g.28945
caatggtcctagtcagcataatgctttgggctttattatcttgtcagtcactacctccta c.*240
. . . . . . g.29005
aagaaaaaaaaaaaggctagaagaaaaaacattacattcatgttctaattatagatttta c.*300
. . . . . . g.29065
gagttaggtagtacaggtaagggggaaattgtaaagaattagcagaattaggcatatgta c.*360
. . . . . . g.29125
caaaaccaaaattttgtcatgaaattttgcctttccacgcttccctcagttcaccaaagt c.*420
. . . . . . g.29185
taccaaaatgtaaaataaaataagactggctcaggtaagtagtgctgccaaccctgatat c.*480
. . . . . . g.29245
aggggagttgtatggaaaaatagtagaattacacagcatgaaaagcagcccatggtttaa c.*540
. . . . . . g.29305
attattggacaatttaaattgtgggtaaatatttaaaactcctgaacaatgtttctgatg c.*600
. . . . . . g.29365
gtcttctatccaccctacttggtaacaaagttctcagatgttaggtcatgtttcatttgc c.*660
. . . . . . g.29425
tcagtcggggatcactcaaaactactagacaaaaaagtgagaggatagatttagaaaaca c.*720
. . . . . . g.29485
tcagtgatgctcagataaacttttaggacctcatattaagagctaagcaaatggccacat c.*780
. . . . . . g.29545
ttcctatattttgacagagatactgctggaaaaattaaaattaaaatgccataatagcta c.*840
. . . . . . g.29605
cctaacaaatatatatgtttaatgtttatcataggccagacattgtgctatgtgcatatc c.*900
. . . . . . g.29665
atatgtattatttcatttaattctcacaacaattctgtgaaatggttacagctattatag c.*960
. . . . . . g.29725
tcatttcacagatgatgaaactaagattcagagcagctgatcttgtgaggcagctggaat c.*1020
. . . . . . g.29785
tggaactcagatttgttgaactctagaactaaagatcataatgttgtcttgtaatatatt c.*1080
. . . . . . g.29845
tatttacaaaacacttcattatttataaagaatttactaacagtttatcttatttatacc c.*1140
. . . . . . g.29905
catacatctgctactttgggaggccctttacatagaaaacagcattctttttgccaaata c.*1200
. . . . . . g.29965
tgaccaaattacttttatttataatttttgatttatatttcagctagatctaaaaagcat c.*1260
. . . . . . g.30025
ctgaaggaatttacaatgaaagatacctatgcaataacatttaggataatctttgacatt c.*1320
. . . . . . g.30085
ttggaaaaataagaattgaggaaaaaaagtgtatctttcaagtagatgcaaagcattata c.*1380
. . . . . . g.30145
atgactgacacttgtatctaactccagtcttacagataactaaggcaaaaagctaaataa c.*1440
. . . . . . g.30205
acaatatgtaacctctaacatttggtaaaaggaagtatactggtctgttagcagagacaa c.*1500
. . . . . . g.30265
actttttttagaattgaagtctgaaacaaacaaaagcaattcaatgtcaatagacattaa c.*1560
. . . . . . g.30325
gcaacataatagacaaacatctcctaagggaacatttgttacagctgctccttccctgaa c.*1620
. . . . . . g.30385
ctgtgctttggaagataagctctgtcctgagtccaaaccaagcccttccaagagagaaca c.*1680
. . . . . . g.30445
aaggtcagagatgttgaagattccagcaaatttctcctcttatttctaccaagcctttgt c.*1740
. . . . . . g.30505
gaacattgctcttcattttggcctgtacttctccctcagggacgtagaacaatggaatgt c.*1800
. . . . . . g.30565
cagtcagtctctgtagttaaaactttttctttaaaattcaattaaggtacttctccctca c.*1860
. . . . . . g.30625
gggacgtagaacaatggaatgtcagtcagtctctgtagttaaaactttttctttaaaatt c.*1920
. . . . . . g.30685
caattaaggtacttctccctcagggacgtagaacaatggaatgtcagtcagtctctgtag c.*1980
. . . . . . g.30745
ttaaaactttttctttaaaattcaattaagttacaccagaatttacaggcaagatttttt c.*2040
. . . . . . g.30805
ttttcattgctcccataagcaaatttgttttaaaataattgtaaatgaggtatatactta c.*2100
. . . . . . g.30865
gttcttggttaaaaaatatattgctttgttaagtattaaagattatttgtaagtcattgt c.*2160
. . . . . . g.30925
attaataatactaataaaatttatcaagcctttatagcaagggtcagtgaattaccactg c.*2220
. . . . . . g.30985
cctgtgggccaaatctagctcactatctgtttttgtaaataaaattttataatagtacac c.*2280
. . . . . . g.31045
agccacactcattcatttattttctgtggttgctttcaagctacaattgtagagttgggt c.*2340
. . . . . . g.31105
agtcgcaacagaatctctgtggcccacaaggctaaaatatttacattctcacccattaca c.*2400
. . . . . . g.31165
gaaaaagtttgataattcctgctttataatatgtaaggcattgtcccattttgcataact c.*2460
. . . . . . g.31225
tgccttatttcatcattatcactacccatttagtagctatggttgttatcttacttctac c.*2520
. . . . . . g.31285
agtggaagagattgaaaagcatttgtcaggttaatgctaaatcagtgcggaaatatagct c.*2580
. . . . . . g.31345
ccactaggaaaatattattaaatttatatccctaaaatttttagaaatctctcaaaatct c.*2640
. . . . . . g.31405
ttccaaatgttctggtatctttgaaaaatgtaaatagtttatttatagagaaccctacct c.*2700
. . . . . . g.31465
ctgaggttgactcaaaggttaaagaaggctcatcagtctatccttctgcctccatatatc c.*2760
. . . . . . g.31525
ctgaacatcaaactatcccaggaaaaccatctagagtagtttgtttcaaaatattagcca c.*2820
. . . . . . g.31585
cagaccacctacatcacaataactcagggagcttatagaagtgaagattcctgaatataa c.*2880
. . . . . . g.31645
acatagtaataattcaacctactgaatggaaatctctgctgaaatccacagttttcataa c.*2940
. . . . . . g.31705
gctccccagatgattcctgtgtacattaaatctagaaaccattagtttgagatctctcaa c.*3000
. . . . . . g.31765
aaataaaaataaaaattgctttcagagagtagcccatgaaatttcccattcttcaaggac c.*3060
. . . . . . g.31825
aaattccttctgttcagccttggtcctccaactgcagtttacaatttttgttcttctcct c.*3120
. . . . . . g.31885
gtaaagaatgtcaatggttatcaccttcaatagtttcaatatgtcccccaaagttatgtg c.*3180
. . . . . . g.31945
tttgaaacttgcaatagtattgggagatggggcctaatgaggtgattaggtgaagtctct c.*3240
. . . . . . g.32005
gccctcatgaaaagattaatcccattatctcaggagtgtgttggttataaaagcaagttt c.*3300
. . . . . . g.32065
ggctccctcttttcctcacacactctttttcccttctgccttcacctttgccgtgggtgg c.*3360
. . . . . . g.32125
acacagcaagaaggccctcatcagatgctggccccttggtcttgaatttcctagcctcta c.*3420
. . . . . . g.32185
caactaagccaaataaatttctgtttattataaataacccagtctcagatattctgttac c.*3480
. . . . . . g.32245
agaaacacaaaatggactaagacaccacccttttccaaaatctctccttgtgatggctcc c.*3540
. . . . . . g.32305
ctttactaacctttcttttagctattccctttatgatagtttcttaattttttctatcaa c.*3600
. . . . . . g.32365
aagctaaatatggcacacttgttctttacagaaaaataaagatattttaaacaaaatact c.*3660
. . . . . . g.32425
agggccatggtatgtaataaaatttgaaacaataatttcaaataataaagattgaaaatg c.*3720
. g.32435
cttaacccag c.*3730
(downstream sequence)
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