(used for variant description)
(last modified January 16, 2013)
This file was created to facilitate the description of sequence variants on transcript NM_032682.5 in the FOXP1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000003.11, covering FOXP1 transcript NM_032682.5.
(upstream sequence)
. . . . g.5046
ggggggtgggcgccagcgccccggcgaacggcaaagagggagccgc c.-481
. . . . | 02 . . g.7318
tcccgctcggggggccgctggagtgcccagcggg | aacccgaaagtttgtaagaggaagag c.-421
. . . . . . g.7378
agcgcgcggcgagcgagcgagcgggccgggggcagcggcagcggcgccggggaccatggt c.-361
. . . . . . g.7438
gctgccggcgcctcctccgcgggcgtgaaggcggcgctcctactccctccccggactccg c.-301
. | 03 . . . . . g.95491
cgg | tgtcccagaagcttttgttgacaattccagtttccgaacaaaacatttcggcaatgg c.-241
. . . . . . g.95551
tgagggcttcgatcccttctctgatttgctgtcagccatgaacggatggatgtgatgcct c.-181
. . | 04 . . . . g.229792
gctagccaaaagg | cttccctctgtgtgttgcagtcctgtggcattatgcatgccccctcc c.-121
. . . . . | 05. g.289121
cagtgaccccaggctttttatggctgtgagacacgttaaaatttcagg | ggtaagacgtga c.-61
. . . . . | 06 g.390608
ccttttgaggtgactataactgaagattgctttacagaagccaaaaaag | gtttttgagtc c.-1
. . . . . . g.390668
ATGATGCAAGAATCTGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCG c.60
M M Q E S G T E T K S N G S A I Q N G S p.20
. . . . . . g.390728
GGCGGCAGCAACCACTTACTAGAGTGCGGCGGTCTTCGGGAGGGGCGGTCCAACGGAGAG c.120
G G S N H L L E C G G L R E G R S N G E p.40
. . . . . . g.390788
ACGCCGGCCGTGGACATCGGGGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAG c.180
T P A V D I G A A D L A H A Q Q Q Q Q Q p.60
| 07 . . . . . . g.476412
| GCACTTCAGGTGGCAAGACAGCTCCTTCTTCAGCAGCAACAGCAGCAGCAAGTTAGTGGA c.240
| A L Q V A R Q L L L Q Q Q Q Q Q Q V S G p.80
. . . . | 08 . . g.535234
TTAAAATCTCCCAAGAGGAATGACAAACAACCAGCTCTTCAG | GTTCCCGTGTCAGTGGCT c.300
L K S P K R N D K Q P A L Q | V P V S V A p.100
. . . . . . g.535294
ATGATGACACCTCAAGTTATCACTCCCCAGCAAATGCAGCAGATCCTCCAGCAACAAGTG c.360
M M T P Q V I T P Q Q M Q Q I L Q Q Q V p.120
. . . . . . g.535354
CTGAGCCCTCAGCAGCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAG c.420
L S P Q Q L Q V L L Q Q Q Q A L M L Q Q p.140
| 09 . . . . . . g.536423
| CAGCAGCTTCAAGAGTTTTATAAAAAACAACAGGAACAGTTGCAGCTTCAACTTTTACAA c.480
| Q Q L Q E F Y K K Q Q E Q L Q L Q L L Q p.160
. . . | 10 . . . g.541924
CAACAACATGCTGGAAAACAGCCTAAAGAG | CAACAGCAGGTGGCTACCCAGCAGTTGGCT c.540
Q Q H A G K Q P K E | Q Q Q V A T Q Q L A p.180
. . . . . . g.541984
TTTCAGCAGCAGCTTTTACAGATGCAGCAGTTACAGCAGCAGCACCTCCTGTCTTTGCAG c.600
F Q Q Q L L Q M Q Q L Q Q Q H L L S L Q p.200
. . . . . . g.542044
CGCCAAGGCCTTCTGACAATTCAGCCCGGGCAGCCTGCCCTTCCCCTTCAACCTCTTGCT c.660
R Q G L L T I Q P G Q P A L P L Q P L A p.220
| 11 . . . . . . g.547513
CAAG | GCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCTCATACT c.720
Q G | M I P T E L Q Q L W K E V T S A H T p.240
. . . . . . g.547573
GCAGAAGAAACCACAGGCAACAATCACAGCAGTTTGGATCTGACCACGACATGTGTCTCC c.780
A E E T T G N N H S S L D L T T T C V S p.260
. . . . . . g.547633
TCCTCTGCACCTTCCAAGACCTCCTTAATAATGAACCCACATGCCTCTACCAATGGACAG c.840
S S A P S K T S L I M N P H A S T N G Q p.280
. . | 12 . . . g.573367
CTCTCAGTCCACACTCCCAAAAGGGAAAG | TTTGTCCCATGAGGAGCACCCCCATAGCCAT c.900
L S V H T P K R E S | L S H E E H P H S H p.300
. . . . . . g.573427
CCTCTCTATGGACATGGTGTATGCAAGTGGCCAGGCTGTGAAGCAGTGTGCGAAGATTTC c.960
P L Y G H G V C K W P G C E A V C E D F p.320
. | 13 . . . . . g.587976
CAATCATTTCTAAA | ACATCTCAACAGTGAGCATGCGCTGGACGATAGAAGTACAGCCCAA c.1020
Q S F L K | H L N S E H A L D D R S T A Q p.340
. . . . | 14 . . g.600930
TGTAGAGTACAAATGCAGGTTGTACAGCAGTTAGAGCTACAG | CTTGCAAAAGACAAAGAA c.1080
C R V Q M Q V V Q Q L E L Q | L A K D K E p.360
. . . . . . g.600990
CGCCTGCAAGCCATGATGACCCACCTGCATGTGAAGTCTACAGAACCCAAAGCCGCCCCT c.1140
R L Q A M M T H L H V K S T E P K A A P p.380
| 15 . . . . . . g.611014
CAGCCC | TTGAATCTGGTATCAAGTGTCACTCTCTCCAAGTCCGCATCGGAGGCTTCTCCA c.1200
Q P | L N L V S S V T L S K S A S E A S P p.400
. . . . . . g.611074
CAGAGCTTACCTCATACTCCAACGACCCCAACCGCCCCCCTGACTCCCGTCACCCAAGGC c.1260
Q S L P H T P T T P T A P L T P V T Q G p.420
. . . . . . g.611134
CCCTCTGTCATCACAACCACCAGCATGCACACGGTGGGACCCATCCGCAGGCGGTACTCA c.1320
P S V I T T T S M H T V G P I R R R Y S p.440
. . | 16 . . . g.611299
GACAAATACAACGTGCCCATTTCGTCAG | CAGATATTGCGCAGAACCAAGAATTTTATAAG c.1380
D K Y N V P I S S A | D I A Q N Q E F Y K p.460
. . . . | 17 . g.611959
AACGCAGAAGTTAGACCACCATTTACATATGCATCTTTAATTAGGCAG | GCCATTCTCGAA c.1440
N A E V R P P F T Y A S L I R Q | A I L E p.480
. . . . . . g.612019
TCTCCAGAAAAGCAGCTAACACTAAATGAGATCTATAACTGGTTCACACGAATGTTTGCT c.1500
S P E K Q L T L N E I Y N W F T R M F A p.500
. . . | 18 . . . g.616343
TACTTCCGACGCAACGCGGCCACGTGGAAG | AATGCAGTGCGTCATAATCTTAGTCTTCAC c.1560
Y F R R N A A T W K | N A V R H N L S L H p.520
. . . . . . g.616403
AAGTGTTTTGTGCGAGTAGAAAACGTTAAAGGGGCAGTATGGACAGTGGATGAAGTAGAA c.1620
K C F V R V E N V K G A V W T V D E V E p.540
. . . | 19 . . . g.618212
TTCCAAAAACGAAGGCCACAAAAGATCAGTGG | TAACCCTTCCCTTATTAAAAACATGCAG c.1680
F Q K R R P Q K I S G | N P S L I K N M Q p.560
. . . . | 20 . . g.622951
AGCAGCCACGCCTACTGCACACCTCTCAATGCAGCTTTACAG | GCTTCAATGGCTGAGAAT c.1740
S S H A Y C T P L N A A L Q | A S M A E N p.580
. . . . . . g.623011
AGTATACCTCTATACACTACCGCTTCCATGGGAAATCCCACTCTGGGCAACTTAGCCAGC c.1800
S I P L Y T T A S M G N P T L G N L A S p.600
. . . . . . g.623071
GCAATACGGGAAGAGCTGAACGGGGCAATGGAGCATACCAACAGCAACGAGAGTGACAGC c.1860
A I R E E L N G A M E H T N S N E S D S p.620
. . | 21 . . . g.629629
AGTCCAGGCAGATCTCCTATGCAAGCCGT | GCATCCTGTACACGTCAAAGAAGAGCCCCTC c.1920
S P G R S P M Q A V | H P V H V K E E P L p.640
. . . . . . g.629689
GATCCAGAGGAAGCTGAAGGGCCCCTGTCCTTAGTGACAACAGCCAACCACAGTCCAGAT c.1980
D P E E A E G P L S L V T T A N H S P D p.660
. . . . . g.629743
TTTGACCATGACAGAGATTACGAAGATGAACCAGTAAACGAGGACATGGAGTGA c.2034
F D H D R D Y E D E P V N E D M E X p.677
. . . . . . g.629803
ctatcggggcgggccaaccccgagaatgaagattggaaaaaggaaaaaaaaaaaaacacg c.*60
. . . . . . g.629863
tcaaaagttagcagtgaaattgttctccatttgttgtacagtctggaggattttcactac c.*120
. . . . . . g.629923
gttttgacaactctgaaatgtgttaactcttagtgccatcaagaaccccatttgggagta c.*180
. . . . . . g.629983
tttttgatttttctactttttgttgaaaaaaggaatttgtactctgtgcattggatggac c.*240
. . . . . . g.630043
ttgtttggtacttgggattttcctctcttaaccgtcaacatcagtgttgtaaatttgcta c.*300
. . . . . . g.630103
aactgattcacttttagcagcagactttgaactgcagtcctgccaacgttggacactgag c.*360
. . . . . . g.630163
gacgcccgacagagcttgtgcacctaagctgcagaccaagcctttgcccagaatttaagg c.*420
. . . . . . g.630223
attccaatggacgacctatttgcacagtactgcatgttgattatcactgcctttactcct c.*480
. . . . . . g.630283
tttttttttttttttttttttttttttttgcttccagttgggatggggaaggcctttgtg c.*540
. . . . . . g.630343
tgtgtattggggggaggggttaaaaaataattatcccaaactttttaatgtattgctttt c.*600
. . . . . . g.630403
tttttttttttttttccttctactataccattttaagttctgacctcaggcctccatttg c.*660
. . . . . . g.630463
ggccgatggcctcttggaggcttaaagttttctgtaccttgtgatgaatgttaataggtg c.*720
. . . . . . g.630523
tttttattatacaaagctgaatgtcatttctcgtttgtagctttctgtcactcattccat c.*780
. . . . . . g.630583
cttccttcagacatcaccacgtttctctaaagtcagaaaacattccgttttggtcttttt c.*840
. . . . . . g.630643
caaaaaggtcccaaatgctgcactctacacatgaaggccctctcacacagacgtgacgtc c.*900
. . . . . . g.630703
ctgccagaaagagaatgaatgacagaaaaaaaaaagagagacaaactctaggaacaatgc c.*960
. . . . . . g.630763
cgattcattccacgcagcagtattgggggtggttcgggggaggggtgtttcggattttct c.*1020
. . . . . . g.630823
ttttttcttttcttttctttttttttttttgcagcaaccattaataaatgccaccacatt c.*1080
. . . . . . g.630883
ctaccagcacaaggaaacataggcagcactgaaaaaaaaaaaaaagctcatattaattag c.*1140
. . . . . . g.630943
actgacaatatggccttggaaggctctcccttgtggaaccaagttgccatgggccttggg c.*1200
. . . . . . g.631003
tgctctgcgataacgggtgtgggttggttttgtttgcaaaatggccaaaaaaaaaaaccg c.*1260
. . . . . . g.631063
gcttccccgagcagctgccctgaaagtaggggtggcggcggcggcgctgagtttatacat c.*1320
. . . . . . g.631123
tagttcagacctacttggtggcattaaactgtttgaatgcaaattcgatttcagattgaa c.*1380
. . . . . . g.631183
cttgttaagggagttaacgagggctgagttcagcaaatgctaaagtgttaatttcaaata c.*1440
. . . . . . g.631243
tgcaaatttggtactgcagtttgttatgcaatattatatcaccaacccagtatcacaaaa c.*1500
. . . . . . g.631303
actcatagaagatatcatgtaggccctgggctttgggggggtcccaaacatggtatgcag c.*1560
. . . . . . g.631363
aaatgtgatggttacaggtcagtacaacctcagtccttagaacccctccacacttcagct c.*1620
. . . . . . g.631423
ctgcacccactttcctgtcatttatttatataggactgtagttttttttagttcgagagc c.*1680
. . . . . . g.631483
ctttcgaagcttaatttatattctttctttgtaccttttttctaaaattaccaaagatat c.*1740
. . . . . . g.631543
tacacaaaggtaaattatgttctctgttttatgctttatctgatgaagccaaatatcctc c.*1800
. . . . . . g.631603
ttattgttgatcaaaggaggcaaaagaatttagaggcaaatgacaagcgataggctattg c.*1860
. . . . . . g.631663
caacctgagaaagagaactgctccttcatcgtaaatttagaagaccaagtagataatgga c.*1920
. . . . . . g.631723
accaaagttgttacttttttctagtagttatttttcctttttctttttgtgtacctctac c.*1980
. . . . . . g.631783
agagaccaaaactcattctcttaaagagattttatggggctactgcagataaaaatagga c.*2040
. . . . . . g.631843
cacaatattaaaggagctacagaaggaagggagtcccatctcaaaaaaaaaatgaatgta c.*2100
. . . . . . g.631903
tgccactgcaattagagtatccaataaaggagacagtttagagtcaggacagaaaagctt c.*2160
. . . . . . g.631963
ccataattgaactagattacataatagtatttctagaaaaagagatatttttagattgta c.*2220
. . . . . . g.632023
tgccacttttgtttaagaactgtgctgtgatcactgtattaattttggtttatcttggca c.*2280
. . . . . . g.632083
tatatccttcagtttgtttttatttttaatttttcctttttttccgattaggctttggtc c.*2340
. . . . . . g.632143
agcatttttcatttaaagaaaagtaacactcccatccactcataagcttggtacaaaaac c.*2400
. . . . . . g.632203
ttctctggcagttacttttgaagcttcactctgctttctgtataaagggcagtctgtggt c.*2460
. . . . . . g.632263
cacgcaagactttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttttc c.*2520
. . . . . . g.632323
caggcagcttcatgatgtgcaggcagtagccagacagggtcatgggaagggggccctgtg c.*2580
. . . . . . g.632383
cttctaaactgagtggttgctggttagtttggtattcaaaagaggataaaaatctggtag c.*2640
. . . . . . g.632443
attagttcattctcagcatgtgtagctagacatgagtaaagataacagcatgagaaactg c.*2700
. . . . . . g.632503
ttagtacgcatacctcagttcaaacctttagggaatgattaaaatttaaaaaaaaaacat c.*2760
. . . . . . g.632563
ttcactcagttgcacttagtcgtatgtcttgcatgcttagtctaaagactgtagcaaaaa c.*2820
. . . . . . g.632623
aaaaaaaaaaagaaaaattagattttacatatctttgcaggtatcacagccttgcagaag c.*2880
. . . . . . g.632683
aaccaactgaaaaaaaaattctcaggctttacagcaagcaaacttcactatgatttttac c.*2940
. . . . . . g.632743
aattctgattctgtatcccctgggggttatcccagttgcttctttaggatggggtttatt c.*3000
. . . . . . g.632803
acgttgtacatatatcccgatgtgtctgtgtgaatctttgtcttttttgggggagggcag c.*3060
. . . . . . g.632863
agggcggttctttttttagatattgttcctaaaaaggaataaatgcatacacctgtttgt c.*3120
. . . . . . g.632923
caaaacacctttgctttttgtgcaactgctttatattaacgatactaaaaaaaaatagct c.*3180
. . . . . . g.632983
ttggaaaaaaaactactgtatgtaacggaattgcagaatatgctgcacatgtattttatt c.*3240
. . . . . . g.633043
tagttatccttgctttaagaatattggatgacatttcctgacatgtgggagggagaaact c.*3300
. . . . . . g.633103
ccctaactttttttttctgcttttaaactgtaacatagttgaagatttcttttttctgtt c.*3360
. . . . . . g.633163
ctcattgattggagcattttgtacaggttttgtgtgtgtgtgtgtgtgtgtgtgcgcgcg c.*3420
. . . . . . g.633223
tgcgtgtgtgttaatctgttttttgatacattcctatcccttgtgtttatcctaccactg c.*3480
. . . . . . g.633283
ccttcctggctatcttaaacaagttcatacatttgaaaagaaaaaaaaatgttgtttaaa c.*3540
. . . . . . g.633343
aaatgttttctcctgctgcagtaaatattttgcatgatgaaattccagggtcacactttt c.*3600
. . . . . . g.633403
ccaagtttatcagtgaagtagtgattaacaatggggagtgtcaaaactattgaacttttg c.*3660
. . . . . . g.633463
tataaaaaaaaaaaaactttacaaggtgccaagatgtaaagaaaatctgttacttttttt c.*3720
. . . . . . g.633523
ttctcaaagaaaagcatacattagggaggtagtcccgtgtgtcagacaaatgcactgtca c.*3780
. . . . . . g.633583
ggaatgaggatccaacctacctgtccctagagtccgtcttgtaagatgagttaggctgcc c.*3840
. . . . . . g.633643
ccttggaccagccacaaaatggaatatcaaggcttatgtacatacgtgaagagttaccac c.*3900
. . . . . . g.633703
cagtcctgccacctttggacagctctaacaccatccccagcatccagtcagacctagtaa c.*3960
. . . . . . g.633763
agaaaaccttggattcttaacccaagataggctgtaaatcactagcttttttttcctcat c.*4020
. . . . . . g.633823
gaaaaaaaatagagttaaaaaatatttcctctcttttccatattccagctgaactccgtt c.*4080
. . . . . . g.633883
tccaaaggcacaaagaagagtgtgcttattcagattttgaatctttttggtaccttttgg c.*4140
. . . . . . g.633943
ttaatgacatagcctcctgaaattctggatgtcttcaaagtcagttttgcttctttatcc c.*4200
. . . . . . g.634003
tgaaaatcagatttacaatgctgaaggcatttcttgggcccagtgtagctcacgcaatct c.*4260
. . . . . . g.634063
ctgctacccataagccttgatgaagatgatacagtccggactgtgagcatggtgcttcat c.*4320
. . . . . . g.634123
gtatatgtgctgccagtaacaagaatttttttgttttgttttgttttgttttgataaggc c.*4380
. . . . . . g.634183
ataaaagaaactcattccttgacatcaactgtaattccatcattccatgtctgcggatac c.*4440
. . . . . . g.634243
agacaataaaaaaaatgttgtgtagtcagtactaattactgacattataagcattctcaa c.*4500
. . . g.634276
atgcaataaaaatgctggttgttcacgctggta c.*4533
(downstream sequence)
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