(used for variant description)
(last modified September 19, 2016)
This file was created to facilitate the description of sequence variants on transcript NM_000511.5 in the FUT2 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_007511.1, covering FUT2 transcript NM_000511.5.
(upstream sequence)
g.5001
a c.-121
. . . . . . g.5061
gtcaccgatgctggaagggtttctttggccctgagtgaagagagacccagagggaacact c.-61
. . . . . . | 02 g.11986
gaggtgcctgcccaaccactctgtcccggtttccttcagcaggaccaggtgagagaag | cc c.-1
. . . . . . g.12046
ATGCTGGTCGTTCAGATGCCTTTCTCCTTTCCCATGGCCCACTTCATCCTCTTTGTCTTT c.60
M L V V Q M P F S F P M A H F I L F V F p.20
. . . . . . g.12106
ACGGTTTCCACTATATTTCACGTTCAGCAGCGGCTAGCGAAGATTCAAGCCATGTGGGAG c.120
T V S T I F H V Q Q R L A K I Q A M W E p.40
. . . . . . g.12166
TTACCGGTGCAGATACCAGTGCTAGCCTCAACATCAAAGGCACTGGGACCCAGCCAGCTC c.180
L P V Q I P V L A S T S K A L G P S Q L p.60
. . . . . . g.12226
AGGGGGATGTGGACGATCAATGCAATAGGCCGCCTGGGGAACCAGATGGGCGAGTACGCC c.240
R G M W T I N A I G R L G N Q M G E Y A p.80
. . . . . . g.12286
ACACTGTACGCCCTGGCCAAGATGAACGGGCGGCCCGCCTTCATCCCGGCCCAGATGCAC c.300
T L Y A L A K M N G R P A F I P A Q M H p.100
. . . . . . g.12346
AGCACCCTGGCCCCCATCTTCAGAATCACCCTGCCGGTGCTGCACAGCGCCACGGCCAGC c.360
S T L A P I F R I T L P V L H S A T A S p.120
. . . . . . g.12406
AGGATCCCCTGGCAGAACTACCACCTGAACGACTGGATGGAGGAGGAATACCGCCACATC c.420
R I P W Q N Y H L N D W M E E E Y R H I p.140
. . . . . . g.12466
CCGGGGGAGTACGTCCGCTTCACCGGCTACCCCTGCTCCTGGACCTTCTACCACCACCTC c.480
P G E Y V R F T G Y P C S W T F Y H H L p.160
. . . . . . g.12526
CGCCAGGAGATCCTCCAGGAGTTCACCCTGCACGACCACGTGCGGGAGGAGGCCCAGAAG c.540
R Q E I L Q E F T L H D H V R E E A Q K p.180
. . . . . . g.12586
TTCCTGCGGGGCCTGCAGGTGAACGGGAGCCGGCCGGGCACCTTTGTAGGGGTCCATGTT c.600
F L R G L Q V N G S R P G T F V G V H V p.200
. . . . . . g.12646
CGCCGAGGGGACTATGTCCATGTCATGCCAAAAGTGTGGAAGGGGGTGGTGGCCGACCGG c.660
R R G D Y V H V M P K V W K G V V A D R p.220
. . . . . . g.12706
CGATACCTACAGCAGGCCCTGGACTGGTTCCGAGCTCGCTACAGCTCCCTCATCTTCGTG c.720
R Y L Q Q A L D W F R A R Y S S L I F V p.240
. . . . . . g.12766
GTCACCAGTAATGGCATGGCCTGGTGTCGGGAGAACATTGACACCTCCCACGGTGATGTG c.780
V T S N G M A W C R E N I D T S H G D V p.260
. . . . . . g.12826
GTGTTTGCTGGCGATGGCATTGAGGGCTCACCTGCCAAAGATTTTGCTCTACTCACACAG c.840
V F A G D G I E G S P A K D F A L L T Q p.280
. . . . . . g.12886
TGTAACCACACCATCATGACCATTGGGACGTTCGGGATCTGGGCCGCATACCTCACGGGC c.900
C N H T I M T I G T F G I W A A Y L T G p.300
. . . . . . g.12946
GGAGACACCATCTACCTGGCCAATTACACCCTCCCCGACTCCCCTTTCCTCAAAATCTTT c.960
G D T I Y L A N Y T L P D S P F L K I F p.320
. . . . . . g.13006
AAGCCAGAGGCAGCCTTCCTGCCGGAGTGGACAGGGATTGCCGCAGACCTGTCCCCCTTA c.1020
K P E A A F L P E W T G I A A D L S P L p.340
. g.13018
CTCAAGCACTAA c.1032
L K H X p.343
. . . . . . g.13078
tgctggcccattctttgagaccttttctccttctctgcctccctcaagatgagtgcccgg c.*60
. . . . . . g.13138
gcatgagaagcacatggttccatgagcaggacccatctctcttctgtgaagatgcgttgg c.*120
. . . . . . g.13198
gctgcaagtaacagaaatctcagtgaacagtggcctggcgtggtggctcatgcctgtaat c.*180
. . . . . . g.13258
gctcgcactttgtgaggccagggtgggtggatcacttgaggtcaggagttcaagactagc c.*240
. . . . . . g.13318
ctggccaacatggtgaaaccccatctcgactaaaaatacaaaaattagccaggcgtggtg c.*300
. . . . . . g.13378
gtgcacacctgtaatcccagctactcgggaggctgaggcaagagaatcacttgaacccag c.*360
. . . . . . g.13438
gaggcggaggttgcagtgagccaagatggtgccgctgcactccagtctgggtgacacagc c.*420
. . . . . . g.13498
aagactccatctcaaaaaaaaaaaaaaaaaaaagaaaagaaaaagaaatgaatgggttca c.*480
. . . . . . g.13558
aagaccataatcatgcatatcacataagaccagaagtggcccaggtccagggtcagttaa c.*540
. . . . . . g.13618
tttagcggctccacaaagtcatcagtcacctgagctccatccatcttcacatgctgtgct c.*600
. . . . . . g.13678
accatttcttagctgtatcatcccatggtcccaaaagggctgctacacatccagccatca c.*660
. . . . . . g.13738
catgcagataattcctttcaaaaacagcagaaagaggctcgttcttgtcttggtcccttt c.*720
. . . . . . g.13798
tgaagaatgaatgaaaccttcctaagccttccagcaatttccccccaactccgatgggta c.*780
. . . . . . g.13858
ggaattgtcacatacccatgtgacccgataggaggcaaaagaaatgagacttctgggatt c.*840
. . . . . . g.13918
agtttagcctcagattctgcagctgagaagttgatcagccacctctgaaggacatgcagc c.*900
. . . . . . g.13978
ttgcagaaaattagggtggtgttaccaaggtgaaaaggggaaatggctttagagtagaca c.*960
. . . . . . g.14038
acagagatgccctgaggggttgtgtaggttgttcactgcaggaagtcccctggttaagaa c.*1020
. . . . . . g.14098
ggcaagtggggtttaaacagacccacagtctactcatcaaaccaggtgtccttggcattg c.*1080
. . . . . . g.14158
tgtccacccagagagctcactgttttcttttctttttcttttcttttttttttttttttt c.*1140
. . . . . . g.14218
gagatggagtcttgctgcatcccccaggctggagtgcagtggcatgatcttggctcactg c.*1200
. . . . . . g.14278
cagcctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctaggat c.*1260
. . . . . . g.14338
tacaggtgcgtgccaccacgcccagctaatttttatatgtttagtggaaatggagtttca c.*1320
. . . . . . g.14398
ccatgttggtcaggctggtctcaaactcctgacctcatgatccgccttcctcggcctccc c.*1380
. . . . . . g.14458
aaagtgctgggattacaggtgttagccactgcgcccggccctagagctcactgttttcta c.*1440
. . . . . . g.14518
gttagtccatctggaagtggagcctttttccagtttgcacaaatgtgccatattggcttg c.*1500
. . . . . . g.14578
tagctggcatgcatccaagtccataggtcctgcctcttcaatcctggctttctagggcct c.*1560
. . . . . . g.14638
gggatgatcattgctagaactgagagaccagcctggctcagtgaacttcagggcgttccg c.*1620
. . . . . . g.14698
ttcattctttcagtaaatgtttgcagcacatgtgttacatgtcaggcagtgaaacccccc c.*1680
. . . . . . g.14758
acagcagccttccctctcagaggatacatttgtaaccattacacagtcatcaaaggaata c.*1740
. . . . . . g.14818
attttttttaatcaccagtgtgcatacagtcatggagttgggtattcccagctaccaggg c.*1800
. . . . . . g.14878
aggctgaggtgggaggattgcttgatgccaggagttagggaatatagtgcaccgtgattg c.*1860
. . . . . . g.14938
gacttgcgaatagccactgcactgcggcctggacgacgtagtgataccctgactcttata c.*1920
. . g.14964
aataaataaatgaataaacacaatta c.*1946
(downstream sequence)
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