(used for variant description)
(last modified December 23, 2023)
This file was created to facilitate the description of sequence variants on transcript NM_003468.3 in the FZD5 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000002.11, covering FZD5 transcript NM_003468.3.
(upstream sequence)
. . . . . g.5050
tgctgccatgtgccgctgccacgggtacccagcctgtcgctaaactttcc c.-361
. . . . . . g.5110
gggcgccagcccggctctgagtcgcgcttctcagcggagtgacccagggacggaggaccc c.-301
. . . . . | 02 . g.5440
aggctggctggggactgtctgctcttctcggcgggatccgtggag | agtcctttccctgga c.-241
. . . . . . g.5500
atccgagccctaaccgtctctccccagccctatccggcgaggagcggagcgctgccagcg c.-181
. . . . . . g.5560
gaggcagcgccttcccgaagcagtttatctttggacggttttctttaaaggaaaaagcaa c.-121
. . . . . . g.5620
ccaacaggttgccagccccggcgccacacacgagacgccggagggagaagccccggcccg c.-61
. . . . . . g.5680
gattcctctgcctgtgtgcgtccctcgcgggctgctggaggcgaggggagggagggggcg c.-1
. . . . . . g.5740
ATGGCTCGGCCTGACCCATCCGCGCCGCCCTCGCTGTTGCTGCTGCTCCTAGCGCAGCTG c.60
M A R P D P S A P P S L L L L L L A Q L p.20
. . . . . . g.5800
GTGGGCCGGGCGGCCGCCGCGTCCAAGGCCCCGGTGTGCCAGGAAATCACGGTGCCCATG c.120
V G R A A A A S K A P V C Q E I T V P M p.40
. . . . . . g.5860
TGCCGCGGCATCGGCTACAACCTGACGCACATGCCCAACCAGTTCAACCACGACACGCAG c.180
C R G I G Y N L T H M P N Q F N H D T Q p.60
. . . . . . g.5920
GACGAGGCGGGCCTGGAGGTGCACCAGTTCTGGCCGCTGGTGGAGATCCAATGCTCGCCG c.240
D E A G L E V H Q F W P L V E I Q C S P p.80
. . . . . . g.5980
GACCTGCGCTTCTTCCTATGCTCTATGTACACGCCCATCTGTCTGCCCGACTACCACAAG c.300
D L R F F L C S M Y T P I C L P D Y H K p.100
. . . . . . g.6040
CCGCTGCCGCCCTGCCGCTCGGTGTGCGAGCGCGCCAAGGCCGGCTGCTCGCCGCTGATG c.360
P L P P C R S V C E R A K A G C S P L M p.120
. . . . . . g.6100
CGCCAGTACGGCTTCGCCTGGCCCGAGCGCATGAGCTGCGACCGCCTCCCGGTGCTGGGC c.420
R Q Y G F A W P E R M S C D R L P V L G p.140
. . . . . . g.6160
CGCGACGCCGAGGTCCTCTGCATGGATTACAACCGCAGCGAGGCCACCACGGCGCCCCCC c.480
R D A E V L C M D Y N R S E A T T A P P p.160
. . . . . . g.6220
AGGCCTTTCCCAGCCAAGCCCACCCTTCCAGGCCCGCCAGGGGCGCCGGCCTCGGGGGGC c.540
R P F P A K P T L P G P P G A P A S G G p.180
. . . . . . g.6280
GAATGCCCCGCTGGGGGCCCGTTCGTGTGCAAGTGTCGCGAGCCCTTCGTGCCCATTCTG c.600
E C P A G G P F V C K C R E P F V P I L p.200
. . . . . . g.6340
AAGGAGTCACACCCGCTCTACAACAAGGTGCGGACGGGCCAGGTGCCCAACTGCGCGGTA c.660
K E S H P L Y N K V R T G Q V P N C A V p.220
. . . . . . g.6400
CCCTGCTACCAGCCGTCCTTCAGTGCCGACGAGCGCACGTTCGCCACCTTCTGGATAGGC c.720
P C Y Q P S F S A D E R T F A T F W I G p.240
. . . . . . g.6460
CTGTGGTCGGTGCTGTGCTTCATCTCCACGTCCACCACAGTGGCCACCTTCCTCATCGAC c.780
L W S V L C F I S T S T T V A T F L I D p.260
. . . . . . g.6520
ATGGAACGCTTCCGCTATCCTGAGCGCCCCATCATCTTCCTGTCAGCCTGCTACCTGTGC c.840
M E R F R Y P E R P I I F L S A C Y L C p.280
. . . . . . g.6580
GTGTCGCTGGGCTTCCTGGTGCGTCTGGTCGTGGGCCATGCCAGCGTGGCCTGCAGCCGC c.900
V S L G F L V R L V V G H A S V A C S R p.300
. . . . . . g.6640
GAGCACAACCACATCCACTACGAGACCACGGGCCCTGCACTGTGCACCATCGTCTTCCTC c.960
E H N H I H Y E T T G P A L C T I V F L p.320
. . . . . . g.6700
CTGGTCTACTTCTTCGGCATGGCCAGCTCCATCTGGTGGGTCATCCTGTCGCTCACCTGG c.1020
L V Y F F G M A S S I W W V I L S L T W p.340
. . . . . . g.6760
TTCCTGGCCGCCGGCATGAAGTGGGGCAACGAGGCCATCGCGGGCTACGCGCAGTACTTC c.1080
F L A A G M K W G N E A I A G Y A Q Y F p.360
. . . . . . g.6820
CACCTGGCTGCGTGGCTCATCCCCAGCGTCAAGTCCATCACGGCACTGGCGCTGAGCTCC c.1140
H L A A W L I P S V K S I T A L A L S S p.380
. . . . . . g.6880
GTGGACGGGGACCCAGTGGCCGGCATCTGCTACGTGGGCAACCAGAACCTGAACTCGCTG c.1200
V D G D P V A G I C Y V G N Q N L N S L p.400
. . . . . . g.6940
CGCGGCTTCGTGCTGGGCCCGCTGGTGCTCTACCTGCTGGTGGGCACGCTCTTCCTGCTG c.1260
R G F V L G P L V L Y L L V G T L F L L p.420
. . . . . . g.7000
GCGGGCTTCGTGTCGCTCTTCCGCATCCGCAGCGTCATCAAGCAGGGCGGCACCAAGACG c.1320
A G F V S L F R I R S V I K Q G G T K T p.440
. . . . . . g.7060
GACAAGCTGGAGAAGCTCATGATCCGCATCGGCATCTTCACGCTGCTCTACACGGTCCCC c.1380
D K L E K L M I R I G I F T L L Y T V P p.460
. . . . . . g.7120
GCCAGCATTGTGGTGGCCTGCTACCTGTACGAGCAGCACTACCGCGAGAGCTGGGAGGCG c.1440
A S I V V A C Y L Y E Q H Y R E S W E A p.480
. . . . . . g.7180
GCGCTCACCTGCGCCTGCCCGGGCCACGACACCGGCCAGCCGCGCGCCAAGCCCGAGTAC c.1500
A L T C A C P G H D T G Q P R A K P E Y p.500
. . . . . . g.7240
TGGGTGCTCATGCTCAAGTACTTCATGTGCCTGGTGGTGGGCATCACGTCGGGCGTCTGG c.1560
W V L M L K Y F M C L V V G I T S G V W p.520
. . . . . . g.7300
ATCTGGTCGGGCAAGACGGTGGAGTCGTGGCGGCGTTTCACCAGCCGCTGCTGCTGCCGC c.1620
I W S G K T V E S W R R F T S R C C C R p.540
. . . . . . g.7360
CCGCGGCGCGGCCACAAGAGCGGGGGCGCCATGGCCGCAGGGGACTACCCCGAGGCGAGC c.1680
P R R G H K S G G A M A A G D Y P E A S p.560
. . . . . . g.7420
GCCGCGCTCACAGGCAGGACCGGGCCGCCGGGCCCCGCCGCCACCTACCACAAGCAGGTG c.1740
A A L T G R T G P P G P A A T Y H K Q V p.580
. g.7438
TCCCTGTCGCACGTGTAG c.1758
S L S H V X p.585
. . . . . . g.7498
gaggctgccgccgagggactcggccggagagctgaggggaggggggcgttttgtttggta c.*60
. . . . . . g.7558
gttttgccaaggtcacttccgtttaccttcatggtgctgttgccccctcccgcggcgact c.*120
. . . . . . g.7618
tggagagagggaagaggggcgttttcgaggaagaacctgtcccaggtcttctccaagggg c.*180
. . . . . . g.7678
cccagctcacgtgtattctattttgcgtttcttactgccttctttatgggaaccctcttt c.*240
. . . . . . g.7738
ttaatttatatgtatttttcttaatttgtaactttgttgcattttggcaacaatttacct c.*300
. . . . . . g.7798
ttgctttgggggctttacaatcctaaggttggcgttgtaatgaagttccacttggttcag c.*360
. . . . . . g.7858
gtttctttgaactgtgtggtctcaattgggaaaatatatttcctatacgtgtgtctttaa c.*420
. . . . . . g.7918
aaaaaaatgtgaacagtgaacgtttcggttgctgtgactgggaagttgttgggtgtgctt c.*480
. . . . . . g.7978
tttcagccagcttctccttccactgcttaaagtgtccatgattctttaaggtgagctgca c.*540
. . . . . . g.8038
gtttatagccccaggtcatacctaggaggggagcataatgagctcagggcctccccaaag c.*600
. . . . . . g.8098
tgacaaggttagggagtgcttagcggttttgtgttcagccttagctttgtttatagaggg c.*660
. . . . . . g.8158
aggttcagtttcttttctgtagtgcttgtaataattctcactcctaacagcaccatcgtt c.*720
. . . . . . g.8218
gtgtcttgaataagttagaggtagcattatagaggatctggcataaatatttgcagtagt c.*780
. . . . . . g.8278
gagagcctaagcgatggtgattggtggagcttgaattttaggctggtgagatggcagctt c.*840
. . . . . . g.8338
tgtgcctgagaggtagtgggtggttcttaagcttcagtgatccccttttttttttttttt c.*900
. . . . . . g.8398
ttttttttttaaggaacttgtgttataattttggtaaaagtataaacccactccctctgg c.*960
. . . . . . g.8458
acaatacttagcgacagttgctaaagggggctcctttttaaatgtaaggactgaaatgga c.*1020
. . . . . . g.8518
tatacttctaataagtaaatttccaacacttatttgctccaccccctcccccctcccccc c.*1080
. . . . . . g.8578
tccccctttatcatgttaaacagcctttttgcttttcttattcctcctctcctggagagc c.*1140
. . . . . . g.8638
tgtgattagaaaccacacccacccttgaatgaagtgcttgaactgggggagggaggctgg c.*1200
. . . . . . g.8698
ctacctgtgaacaaacattggcccaaataagggaaaataagtgttcctggactttggact c.*1260
. . . . . . g.8758
agtttatagccagatattccaagagcagcaagacgttgctctctgccgtctctgaaaaca c.*1320
. . . . . . g.8818
aaagagatgcataacatgcttgcacaaccttttaaaatatagatcagtatagtgctacct c.*1380
. . . . . . g.8878
ctatagttttcttcctcttctgagaaagcctgtatattgatgatcacacacacacacact c.*1440
. . . . . . g.8938
ttgcaattagagaatttggtttgctttactaatctgtttaactattccttcattcattat c.*1500
. . . . . . g.8998
gaacgcttatattgatgaacatacacacagaggtttctttgctattagaaaattctgttt c.*1560
. . . . . . g.9058
gctttcctaatctgtttaagcattcattcatgaagagtgtggggccattactggggaagg c.*1620
. . . . . . g.9118
ggggtgacagtgcctcagccagcaaaataccaatgaccaggattggggactaaatttagg c.*1680
. . . . . . g.9178
aagctaaaatggccagagcaattaacatttgagaaaatcctgtctaggaaaacaacttga c.*1740
. . . . . . g.9238
gtgtaggcatttgtaattcacttataccaaagttggaaaagtaaaatttaagcctaggac c.*1800
. . . . . . g.9298
aatttttacttcatggatgttaaatagacaaatgcatagttcccagggggaatttaaaca c.*1860
. . . . . . g.9358
ctttactggtgggaagaaacctagtattaaagttgtaaggactctcaaaaacttcacatt c.*1920
. . . . . . g.9418
tattaaaatgcactgctcttacccaatttatcctctgaattaaaatttcagtggattcta c.*1980
. . . . . . g.9478
caaaacctcgtacaaatagctacagaactttgtgcctattttattcctctatttattctt c.*2040
. . . . . . g.9538
ctaggaagaagcctcttcctagaatcttgaaatagatcccttgactgaatgccaattcct c.*2100
. . . . . . g.9598
ctcctgtttttcaaatgagagaaccttttctgatcaccttgaccttttccctcatttcat c.*2160
. . . . . . g.9658
atgtcttcccagaaagtagacagactgctctgctgccttcagtcattgtgcctcatttgg c.*2220
. . . . . . g.9718
gttgtccctccttctttgtggagaaatctggaaatgatgcacagtgtatccaaaagttgt c.*2280
. . . . . . g.9778
gggatgaagtggatgaaagtgatttaattcatttttagaatttttttttgttttgtttta c.*2340
. . . . . . g.9838
gcaacatgctgaacaactaatttactttaaaaataagccagttaaaacaaaggacgctaa c.*2400
. . . . . . g.9898
gcccaagtggggggcaatattagtcaggatctttggggtctaattccagaccaactttca c.*2460
. . . . . . g.9958
gaagcacttctttgtctctgttctcacctctgctgtccctctcttccctcatcccctaag c.*2520
. . . . . . g.10018
agagacaaagataaaagcccacctgcatccctaagtcttactgagatcagccaccccagg c.*2580
. . . . . . g.10078
ggagagaaactggatctacttacagccaccccctgtttccatccatatagttacttcccc c.*2640
. . . . . . g.10138
caatttgcatgtgattatggaaacaagtcatgctcatgaaagcaactgtaaaataaaagg c.*2700
. . . . . . g.10198
ttatggagtagttcagcaacttcttcacagccagctttgtggagctggggaggacttagg c.*2760
. . . . . . g.10258
gcccattggagtctcttatgtgtacagcttcagggctgtccctttcagtttgattttaag c.*2820
. . . . . . g.10318
caatgcctcacttcatagcttagggggtaaggattccattcaggtaggttgtctaaagga c.*2880
. . . . . . g.10378
actaatgggacctctcagtgaattagctgaccagattttaggaaatctttttaatttcta c.*2940
. . . . . . g.10438
tgattttccttctcacattttgaaatggtaaaattgactggaaataatttttcttggtgc c.*3000
. . . . . . g.10498
cttattggttttccttgcaaacctttctcatattttctcatgaccattgccagtgaccaa c.*3060
. . . . . . g.10558
ggcccatgtgtgtgttgtgtgtaattgtgggcatgtacaagcttaaataacgtgccgaca c.*3120
. . . . . . g.10618
gcactgtttcaaagttggtattcattaggctgttgcctcctgggctggagctgcgctaat c.*3180
. . . . . . g.10678
cctgacaccggctgccaggagaaaacctcatggatcacacaccaaaccttaataacagca c.*3240
. . . . . . g.10738
tccgtgacctgcactctccagtacagaatgggaaccccagagctaggaaatgtagttgta c.*3300
. . . . . . g.10798
tattttaatgaactgctaccccagccaaagaagcttctttcacttttgtgctctacagaa c.*3360
. . . . . . g.10858
agcccaaggggggtaggagggacagagctttgaataactgctttctaacactaaatgtgg c.*3420
. . . . . . g.10918
ccaacaggacagagcacatcacacgtataggcaggtgtgagggacagtggctaagaattg c.*3480
. . . . . . g.10978
cctgctccctctgcatgctctttcttgtttccaaagtccaatcaagtgatcctgggaaac c.*3540
. . . . . . g.11038
aaatctgtctggattgcggagggtggttctgaaagaactgccaagacgttaaagaagggt c.*3600
. . . . . . g.11098
gaagagtaggcagaatataagtagctaacctgagtcaagactctcaaaagctagcagcct c.*3660
. . . . . . g.11158
gatgacaataggatttatttcagccaggatagtgtctgtctgtgagtgcatcattttaag c.*3720
. . . . . . g.11218
acagtatgacttcatgttgttacaaactatgtatagtatgtatgttttgtgggttgtata c.*3780
. . . . . . g.11278
tatacataatatatattatatatatatatgagagatttggtgacttttgatacgggtttg c.*3840
. . . . . . g.11338
gtgcaggtgaatttattactgagccaaatgaggcacataccgagtcagtagttgaagtcc c.*3900
. . . . . . g.11398
agggcattcgatactgtttatgatttccatatatgtatagtgcctatcccatgctgtagt c.*3960
. . . . . . g.11458
cactgttatgttaaatccagaagttacactagagccagcgatactttatttgtagacaat c.*4020
. . . . . . g.11518
caatttgaatccatatgttattactggcagatgatacatgattacagttctgaatctgta c.*4080
. . . . . . g.11578
acacttacaaaaggaaacccagagcagcttgatgagtttttgtttctgcttcgttcctgg c.*4140
. . . . . . g.11638
gagtcagtagaaacagcagttgtatgtggttatgttagtctcaagatacttaatttgttg c.*4200
. . . . . . g.11698
accttacttcagaaaaattttgtatgtattatatttgtgggaaggtaaaataatcatttg c.*4260
. . . . . . g.11758
agatttttatcaaatatgaagattagttatttatgaaaaacaaagaaatgtctatttttc c.*4320
. . . . . . g.11818
tttgttcccaattaatgtagataaattttaaaatgcattaaagtaatggtaaagacaata c.*4380
. g.11834
aaaagatgctgtagaa c.*4396
(downstream sequence)
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