(used for variant description)
(last modified July 4, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_001164615.1 in the FZD6 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_028909.1, covering FZD6 transcript NM_001164615.1.
(upstream sequence)
. . . . . g.5050
cctttcgaactcaagtcacttgggcaattggctttacaaagcaaattggc c.-241
. . . . . . g.5110
tccgtttaaggattcttgactcctgaaatccgcaaggaagtgggttcttttagagccagc c.-181
. . . | 02. . . g.6555
gccaagagcttcaaaaaatccttctaag | taattgacccaggactcattttcaggaaagcc c.-121
. . . . . . g.6615
tgaaaatgagtaaaatagtgaaatgaggaatttgaacattttatctttggatggggatct c.-61
. . . . . . g.6675
tctgaggatgcaaagagtgattcatccaagccatgtggtaaaatcaggaatttgaagaaa c.-1
. . . . . . g.6735
ATGGAAATGTTTACATTTTTGTTGACGTGTATTTTTCTACCCCTCCTAAGAGGGCACAGT c.60
M E M F T F L L T C I F L P L L R G H S p.20
. . . . . . g.6795
CTCTTCACCTGTGAACCAATTACTGTTCCCAGATGTATGAAAATGGCCTACAACATGACG c.120
L F T C E P I T V P R C M K M A Y N M T p.40
. . . . . | 03. g.25160
TTTTTCCCTAATCTGATGGGTCATTATGACCAGAGTATTGCCGCGGTGGAAATGGAG | CAT c.180
F F P N L M G H Y D Q S I A A V E M E | H p.60
. . . . . . g.25220
TTTCTTCCTCTCGCAAATCTGGAATGTTCACCAAACATTGAAACTTTCCTCTGCAAAGCA c.240
F L P L A N L E C S P N I E T F L C K A p.80
. . . . . . g.25280
TTTGTACCAACCTGCATAGAACAAATTCATGTGGTTCCACCTTGTCGTAAACTTTGTGAG c.300
F V P T C I E Q I H V V P P C R K L C E p.100
. . . . . . g.25340
AAAGTATATTCTGATTGCAAAAAATTAATTGACACTTTTGGGATCCGATGGCCTGAGGAG c.360
K V Y S D C K K L I D T F G I R W P E E p.120
. | 04 . . . . . g.31094
CTTGAATGTGACAG | ATTACAATACTGTGATGAGACTGTTCCTGTAACTTTTGATCCACAC c.420
L E C D R | L Q Y C D E T V P V T F D P H p.140
. . . . . . g.31154
ACAGAATTTCTTGGTCCTCAGAAGAAAACAGAACAAGTCCAAAGAGACATTGGATTTTGG c.480
T E F L G P Q K K T E Q V Q R D I G F W p.160
. . . . . . g.31214
TGTCCAAGGCATCTTAAGACTTCTGGGGGACAAGGATATAAGTTTCTGGGAATTGACCAG c.540
C P R H L K T S G G Q G Y K F L G I D Q p.180
. . . . . . g.31274
TGTGCGCCTCCATGCCCCAACATGTATTTTAAAAGTGATGAGCTAGAGTTTGCAAAAAGT c.600
C A P P C P N M Y F K S D E L E F A K S p.200
. . . . . . g.31334
TTTATTGGAACAGTTTCAATATTTTGTCTTTGTGCAACTCTGTTCACATTCCTTACTTTT c.660
F I G T V S I F C L C A T L F T F L T F p.220
. . . . . . g.31394
TTAATTGATGTTAGAAGATTCAGATACCCAGAGAGACCAATTATATATTACTCTGTCTGT c.720
L I D V R R F R Y P E R P I I Y Y S V C p.240
. . . . . . g.31454
TACAGCATTGTATCTCTTATGTACTTCATTGGATTTTTGCTAGGCGATAGCACAGCCTGC c.780
Y S I V S L M Y F I G F L L G D S T A C p.260
. . . . . . g.31514
AATAAGGCAGATGAGAAGCTAGAACTTGGTGACACTGTTGTCCTAGGCTCTCAAAATAAG c.840
N K A D E K L E L G D T V V L G S Q N K p.280
. . . . . . g.31574
GCTTGCACCGTTTTGTTCATGCTTTTGTATTTTTTCACAATGGCTGGCACTGTGTGGTGG c.900
A C T V L F M L L Y F F T M A G T V W W p.300
. . . . . . g.31634
GTGATTCTTACCATTACTTGGTTCTTAGCTGCAGGAAGAAAATGGAGTTGTGAAGCCATC c.960
V I L T I T W F L A A G R K W S C E A I p.320
. . . . . . g.31694
GAGCAAAAAGCAGTGTGGTTTCATGCTGTTGCATGGGGAACACCAGGTTTCCTGACTGTT c.1020
E Q K A V W F H A V A W G T P G F L T V p.340
. . . . . . g.31754
ATGCTTCTTGCTATGAACAAAGTTGAAGGAGACAACATTAGTGGAGTTTGCTTTGTTGGC c.1080
M L L A M N K V E G D N I S G V C F V G p.360
. . . . . . g.31814
CTTTATGACCTGGATGCTTCTCGCTACTTTGTACTCTTGCCACTGTGCCTTTGTGTGTTT c.1140
L Y D L D A S R Y F V L L P L C L C V F p.380
. . . . . . g.31874
GTTGGGCTCTCTCTTCTTTTAGCTGGCATTATTTCCTTAAATCATGTTCGACAAGTCATA c.1200
V G L S L L L A G I I S L N H V R Q V I p.400
. . . . . . g.31934
CAACATGATGGCCGGAACCAAGAAAAACTAAAGAAATTTATGATTCGAATTGGAGTCTTC c.1260
Q H D G R N Q E K L K K F M I R I G V F p.420
. . . . . . g.31994
AGCGGCTTGTATCTTGTGCCATTAGTGACACTTCTCGGATGTTACGTCTATGAGCAAGTG c.1320
S G L Y L V P L V T L L G C Y V Y E Q V p.440
. . . . . . g.32054
AACAGGATTACCTGGGAGATAACTTGGGTCTCTGATCATTGTCGTCAGTACCATATCCCA c.1380
N R I T W E I T W V S D H C R Q Y H I P p.460
. | 05 . . . . . g.34883
TGTCCTTATCAG | GCAAAAGCAAAAGCTCGACCAGAATTGGCTTTATTTATGATAAAATAC c.1440
C P Y Q | A K A K A R P E L A L F M I K Y p.480
. . . . . . g.34943
CTGATGACATTAATTGTTGGCATCTCTGCTGTCTTCTGGGTTGGAAGCAAAAAGACATGC c.1500
L M T L I V G I S A V F W V G S K K T C p.500
. . . . | 06 . . g.36241
ACAGAATGGGCTGGGTTTTTTAAACGAAATCGCAAGAGAGA | TCCAATCAGTGAAAGTCGA c.1560
T E W A G F F K R N R K R D | P I S E S R p.520
. . . . . . g.36301
AGAGTACTACAGGAATCATGTGAGTTTTTCTTAAAGCACAATTCTAAAGTTAAACACAAA c.1620
R V L Q E S C E F F L K H N S K V K H K p.540
. . . . . . g.36361
AAGAAGCACTATAAACCAAGTTCACACAAGCTGAAGGTCATTTCCAAATCCATGGGAACC c.1680
K K H Y K P S S H K L K V I S K S M G T p.560
. . . . . . g.36421
AGCACAGGAGCTACAGCAAATCATGGCACTTCTGCAGTAGCAATTACTAGCCATGATTAC c.1740
S T G A T A N H G T S A V A I T S H D Y p.580
. . . . . . g.36481
CTAGGACAAGAAACTTTGACAGAAATCCAAACCTCACCAGAAACATCAATGAGAGAGGTG c.1800
L G Q E T L T E I Q T S P E T S M R E V p.600
. . . . . . g.36541
AAAGCGGACGGAGCTAGCACCCCCAGGTTAAGAGAACAGGACTGTGGTGAACCTGCCTCG c.1860
K A D G A S T P R L R E Q D C G E P A S p.620
. . . . . . g.36601
CCAGCAGCATCCATCTCCAGACTCTCTGGGGAACAGGTCGACGGGAAGGGCCAGGCAGGC c.1920
P A A S I S R L S G E Q V D G K G Q A G p.640
. . . | 07 . . . g.37936
AGTGTATCTGAAAGTGCGCGGAGTGAAGGAAG | GATTAGTCCAAAGAGTGATATTACTGAC c.1980
S V S E S A R S E G R | I S P K S D I T D p.660
. . . . . . g.37996
ACTGGCCTGGCACAGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAGCAGCCTC c.2040
T G L A Q S N N L Q V P S S S E P S S L p.680
. . . . . . g.38056
AAAGGTTCCACATCTCTGCTTGTTCACCCGGTTTCAGGAGTGAGAAAAGAGCAGGGAGGT c.2100
K G S T S L L V H P V S G V R K E Q G G p.700
. . g.38077
GGTTGTCATTCAGATACTTGA c.2121
G C H S D T X p.706
. . . . . . g.38137
agaacattttctctcgttactcagaagcaaatttgtgttacactggaagtgacctatgca c.*60
. . . . . . g.38197
ctgttttgtaagaatcactgttacattcttcttttgcacttaaagttgcattgcctactg c.*120
. . . . . . g.38257
ttatactggaaaaaatagagttcaagaataatatgactcatttcacacaaaggttaatga c.*180
. . . . . . g.38317
caacaatatacctgaaaacagaaatgtgcaggttaataatatttttttaatagtgtggga c.*240
. . . . . . g.38377
ggacagagttagaggaatcttccttttctatttatgaagattctactcttggtaagagta c.*300
. . . . . . g.38437
ttttaagatgtactatgctattttacttttttgatataaaatcaagatatttctttgctg c.*360
. . . . . . g.38497
aagtatttaaatcttatccttgtatctttttatacatatttgaaaataagcttatatgta c.*420
. . . . . . g.38557
tttgaacttttttgaaatcctattcaagtatttttatcatgctattgtgatattttagca c.*480
. . . . . . g.38617
ctttggtagcttttacactgaatttctaagaaaattgtaaaatagtcttcttttatactg c.*540
. . . . . . g.38677
taaaaaaagatataccaaaaagtcttataataggaatttaactttaaaaacccacttatt c.*600
. . . . . . g.38737
gataccttaccatctaaaatgtgtgatttttatagtctcgttttaggaatttcacagatc c.*660
. . . . . . g.38797
taaattatgtaactgaaataaggtgcttactcaaagagtgtccactattgattgtattat c.*720
. . . . . . g.38857
gctgctcactgatccttctgcatatttaaaataaaatgtcctaaagggttagtagacaaa c.*780
. . . . . . g.38917
atgttagtcttttgtatattaggccaagtgcaattgacttcccttttttaatgtttcatg c.*840
. . . . . . g.38977
accacccattgattgtattataaccacttacagttgcttatattttttgttttaactttt c.*900
. . . . . . g.39037
gttttttaacatttagaatattacattttgtattatacagtacctttctcagacattttg c.*960
. . . . . . g.39097
tagaattcatttcggcagctcactaggattttgctgaacattaaaaagtgtgatagcgat c.*1020
. . . . . . g.39157
attagtgccaatcaaatggaaaaaaggtagttttaataaacaagacacaacgtttttata c.*1080
. . . . . . g.39217
caacatactttaaaatattaaggagttttcttaattttgtttcctattaagtattattct c.*1140
. . . . . . g.39277
ttgggcaagattttctgatgcttttgattttctctcaatttagcatttgcttttggtttt c.*1200
. . . . . . g.39337
tttctctatttagcattctgttaaggcacaaaaactatgtactgtatgggaaatgttgta c.*1260
. . . . . . g.39397
aatattaccttttccacattttaaacagacaactttgaatacaaaaactttgttttgtgt c.*1320
. . . g.39433
gatcttttcattaataaaattatctttgtataagaa c.*1356
(downstream sequence)
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